View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14352_low_29 (Length: 258)

Name: NF14352_low_29
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14352_low_29
NF14352_low_29
[»] chr2 (8 HSPs)
chr2 (13-241)||(29541407-29541635)
chr2 (38-225)||(29518136-29518323)
chr2 (36-226)||(29507196-29507386)
chr2 (36-225)||(29535270-29535459)
chr2 (38-225)||(29511018-29511205)
chr2 (51-226)||(29505391-29505566)
chr2 (41-222)||(29549036-29549217)
chr2 (41-205)||(29490454-29490618)
[»] chr4 (1 HSPs)
chr4 (42-151)||(51266291-51266400)
[»] scaffold0186 (1 HSPs)
scaffold0186 (118-222)||(9156-9260)
[»] chr8 (1 HSPs)
chr8 (118-222)||(18874653-18874757)


Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 13 - 241
Target Start/End: Original strand, 29541407 - 29541635
Alignment:
Q  13 aaaataaaatttgaagactcttattatataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaagg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29541407 aaaataaaatttgaagactcttattatataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaagg 29541506  T
Q  113 agatctatccttccaaacctcatcaatatactcaacaattacaagtgactcacaaataggtttgccattgtggattagaaccgggattttcttgagaacc 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29541507 agatctatccttccaaacctcatcaatatactcaacaattacaagtgactcacaaataggtttgccattgtggattagaaccgggattttcttgtgaacc 29541606  T
Q  213 gggttcatttgtagaagataaggccaatt 241  Q
    |||||||||||||||||||||||||||||    
T  29541607 gggttcatttgtagaagataaggccaatt 29541635  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 225
Target Start/End: Original strand, 29518136 - 29518323
Alignment:
Q  38 atataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatca 137  Q
    ||||||||||||||||||||| |||||||| ||||||||||||| |||||| || |||||||||||||||||||||||| | || |||||||||||||||    
T  29518136 atataccttcttatcaacataatcagcccagaatctagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacctcatca 29518235  T
Q  138 atatactcaacaattacaagtgactcacaaataggtttgccattgtggattagaaccgggattttcttgagaaccgggttcatttgta 225  Q
    ||||||| ||||   |  |  || |||||||| | ||| ||||| || || ||||| |||||||||||  |||| |||||||||||||    
T  29518236 atatactgaacagcaattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgta 29518323  T

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Target: chr2; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 29507196 - 29507386
Alignment:
Q  36 ttatataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcat 135  Q
    ||||||||||||||||||| ||| |||||||| ||||||||||||||| |||| || |||||||||||||| ||||||||| |||| |||||||||||||    
T  29507196 ttatataccttcttatcaatataatcagcccagaatctagcttgtgctttctgatatggatcagaaggcaagaaaggagatttatcattccaaacctcat 29507295  T
Q  136 caatatactcaacaattacaagtgactcacaaataggtttgccattgtggattagaaccgggattttcttgagaaccgggttcatttgtag 226  Q
    ||||||| | ||||   |  |  || |||||||  ||||| ||||| || || ||||| |||||||||||| |||| ||||||||||||||    
T  29507296 caatatattgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaacagggttcatttgtag 29507386  T

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Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 36 - 225
Target Start/End: Original strand, 29535270 - 29535459
Alignment:
Q  36 ttatataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcat 135  Q
    ||||||||||||||||||||||| |||||||| || |||||||||| |||||| || ||||||||||||||||||| |||| | || |||||||||||||    
T  29535270 ttatataccttcttatcaacataatcagcccagaacctagcttgtgatctctgataaggatcagaaggcaacaaagaagatttctcattccaaacctcat 29535369  T
Q  136 caatatactcaacaattacaagtgactcacaaataggtttgccattgtggattagaaccgggattttcttgagaaccgggttcatttgta 225  Q
    ||||||||| ||||   |  |  || |||||||| | ||| ||||| || |||||||| |||||||||||| |||  |||||||||||||    
T  29535370 caatatactgaacagccattaaagattcacaaattgatttaccattatgaattagaacagggattttcttgtgaatagggttcatttgta 29535459  T

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Target: chr2; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 38 - 225
Target Start/End: Original strand, 29511018 - 29511205
Alignment:
Q  38 atataccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatca 137  Q
    ||||||||||||||||||||| |||||||| ||||||||||||| |||||| || |||||||||||||||||||||||| | || |||||||| ||||||    
T  29511018 atataccttcttatcaacataatcagcccagaatctagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatca 29511117  T
Q  138 atatactcaacaattacaagtgactcacaaataggtttgccattgtggattagaaccgggattttcttgagaaccgggttcatttgta 225  Q
    ||||| | ||||   |  |  || |||||||| | ||| ||||| || || ||||| |||||||||||  |||| |||||||||||||    
T  29511118 atatattgaacagcaattaaagattcacaaattgatttaccattatgaataagaactgggattttcttatgaacagggttcatttgta 29511205  T

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Target: chr2; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 226
Target Start/End: Original strand, 29505391 - 29505566
Alignment:
Q  51 tcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatcaatatactcaacaa 150  Q
    |||||||||| || ||| ||| ||||||| | ||| ||||| |||||||||||||| ||||||||   ||| |||||||||||||||||||| |||||||    
T  29505391 tcaacatagttagtccagaatttagcttgggatctttggtaaggatcagaaggcaaaaaaggagaatgatcattccaaacctcatcaatatattcaacaa 29505490  T
Q  151 ttacaagtgactcacaaataggtttgccattgtggattagaaccgggattttcttgagaaccgggttcatttgtag 226  Q
    |    |||||||||||||| | ||||||||| ||||||||||| || ||||||||| |||  || |||||||||||    
T  29505491 tatttagtgactcacaaatggatttgccattatggattagaactggaattttcttgtgaattggattcatttgtag 29505566  T

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Target: chr2; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 222
Target Start/End: Original strand, 29549036 - 29549217
Alignment:
Q  41 taccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatcaata 140  Q
    |||||||||||||| ||| ||||||||||||  |||||||| |||||| || |||||||||||||||||||||||| | || |||||||| |||||||||    
T  29549036 taccttcttatcaatataatcagcccaaaataaagcttgtgatctctgataaggatcagaaggcaacaaaggagatttctcattccaaacttcatcaata 29549135  T
Q  141 tactcaacaattacaagtgactcacaaataggtttgccattgtggattagaaccgggattttcttgagaaccgggttcattt 222  Q
    || | ||||   |  |  || |||||||| ||||| ||||| || || ||||| |||||||||||  |||||||||||||||    
T  29549136 tattgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcattt 29549217  T

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Target: chr2; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 41 - 205
Target Start/End: Complemental strand, 29490618 - 29490454
Alignment:
Q  41 taccttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatcaata 140  Q
    |||||| ||||||| ||| ||| |||||||||||||||| |||||||  || |||||||||||||  || |||| | |||| |||||||||||||| |||    
T  29490618 tacctttttatcaatataatcaacccaaaatctagcttgagctctctcataaggatcagaaggcatgaatggagctttatcattccaaacctcatctata 29490519  T
Q  141 tactcaacaattacaagtgactcacaaataggtttgccattgtggattagaaccgggattttctt 205  Q
    ||||  ||||| | |  ||| ||||||| |||||| ||||| || || ||||| || ||||||||    
T  29490518 tactggacaataatagctgattcacaaacaggttttccattatgaataagaactggaattttctt 29490454  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 151
Target Start/End: Original strand, 51266291 - 51266400
Alignment:
Q  42 accttcttatcaacatagtcagcccaaaatctagcttgtgctctctggtagggatcagaaggcaacaaaggagatctatccttccaaacctcatcaatat 141  Q
    ||||| ||||||||| | |||||||||||||||||||| |||||||| |  ||||| |  |||| ||| |||| |  ||| ||||| ||||||||||| |    
T  51266291 accttattatcaacaaaatcagcccaaaatctagcttgagctctctgatgtggatcggtgggcagcaatggagtttgatctttccagacctcatcaatgt 51266390  T
Q  142 actcaacaat 151  Q
    | ||||||||    
T  51266391 attcaacaat 51266400  T

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Target: scaffold0186 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 9156 - 9260
Alignment:
Q  118 tatccttccaaacctcatcaatatactcaacaattacaagtgactcacaaataggtttgccattgtggattagaaccgggattttcttgagaaccgggtt 217  Q
    ||||||||||||||||||||||||| |||||||| |  |  |||||| |||| ||||| || || ||||| ||||| || || |||||| |||  |||||    
T  9156 tatccttccaaacctcatcaatatattcaacaataatgatggactcagaaattggttttcccttatggataagaacaggaatcttcttgtgaattgggtt 9255  T
Q  218 cattt 222  Q
    |||||    
T  9256 cattt 9260  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 18874653 - 18874757
Alignment:
Q  118 tatccttccaaacctcatcaatatactcaacaattacaagtgactcacaaataggtttgccattgtggattagaaccgggattttcttgagaaccgggtt 217  Q
    ||||||||||||||||||||||||| |||||||| |  |  |||||| |||| ||||| || || ||||| ||||| || || |||||| |||  |||||    
T  18874653 tatccttccaaacctcatcaatatattcaacaataatgatggactcagaaattggttttcccttatggataagaacaggaatcttcttgtgaattgggtt 18874752  T
Q  218 cattt 222  Q
    |||||    
T  18874753 cattt 18874757  T

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