View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14352_low_3 (Length: 498)

Name: NF14352_low_3
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14352_low_3
NF14352_low_3
[»] chr8 (9 HSPs)
chr8 (10-481)||(7100582-7101055)
chr8 (188-481)||(7086970-7087263)
chr8 (196-481)||(7069904-7070189)
chr8 (110-179)||(7087320-7087389)
chr8 (376-473)||(7078436-7078533)
chr8 (376-472)||(7028695-7028791)
chr8 (376-472)||(7035397-7035493)
chr8 (99-180)||(7070253-7070331)
chr8 (369-464)||(7021085-7021180)
[»] chr4 (11 HSPs)
chr4 (391-477)||(4220764-4220850)
chr4 (368-477)||(3953034-3953143)
chr4 (370-477)||(4003262-4003369)
chr4 (391-467)||(3811963-3812039)
chr4 (391-458)||(3821545-3821612)
chr4 (346-477)||(3915970-3916101)
chr4 (361-458)||(3988170-3988267)
chr4 (391-454)||(3825804-3825867)
chr4 (391-454)||(4019561-4019624)
chr4 (391-477)||(4011741-4011827)
chr4 (417-454)||(3805837-3805874)
[»] chr5 (1 HSPs)
chr5 (361-477)||(13399103-13399219)
[»] chr6 (1 HSPs)
chr6 (404-441)||(12782174-12782211)


Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 10 - 481
Target Start/End: Complemental strand, 7101055 - 7100582
Alignment:
Q  10 atatacaaagtggtccaattggtgggaaaatttatggaagcaatagtagtcaaatatggctgtttgacatgaattaattatatcatcttatcttatgtat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||     
T  7101055 atatacaaagtggtccaattggtgggaaaatttatggaagcaatagtagtcaaatatagctgtttgacatgaattaactatatcatcttatcttatgtag 7100956  T
Q  110 agtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtttatcagtttgacatcggaatttcaatgttctgt 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |||    
T  7100955 agtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtgtatctgtttgacatcggaatttcaatgttttgt 7100856  T
Q  210 tcctcaaagtga--caagcatgatgtttttgttagctttagaggtctagatatccgtgaaggttttcttagccatttggttgaagctctatctcgaaaga 307  Q
    ||||||| ||||  |||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  7100855 tcctcaacgtgagacaagtatgatgtctttgttagctttagaggtctagatatccttgaaggttttcttagccatttggttgaagctttatctcgaaaga 7100756  T
Q  308 aaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcagaatcacttcttgaagctattgaaacatccttgatttctttggtcatatt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  7100755 aaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcacaatcacttcttgaaactattgaaacatcgttgatttctttggtcatatt 7100656  T
Q  408 ctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagagaaagatg 481  Q
    ||||||||||||||||||||| || ||||||||||||||  | |||||||||||||||||||| ||||||||||    
T  7100655 ctctcaaaactatgcttcttcgtcgtggtgtttggatgagttagtcaaaattgttgagtgtagggagaaagatg 7100582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 188 - 481
Target Start/End: Complemental strand, 7087263 - 7086970
Alignment:
Q  188 catcggaatttcaatgttctgttcctcaaagtgacaagcatgatgtttttgttagctttagaggtctagatatccgtgaaggttttcttagccatttggt 287  Q
    ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||||    
T  7087263 catcggaatttcaatgttcagttcctcaaagtgacaagcatgatgtctttgttagctttagaggtctggacatccgtgaaggttttcttagtcatttggt 7087164  T
Q  288 tgaagctctatctcgaaagaaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcagaatcacttcttgaagctattgaaacatcc 387  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||     
T  7087163 tgaagctttatctcgaaaggaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcacaatcactttttgaagctattgaaacatct 7087064  T
Q  388 ttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagagaaagatg 481  Q
    |  ||||| || ||||||||||||||||||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7087063 tcaatttcattagtcatattctctcaaaactatgcttcttcaaaatggtgtttggatgagcttgtcaaaattgttgagtgtagagagaaagatg 7086970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 196 - 481
Target Start/End: Complemental strand, 7070189 - 7069904
Alignment:
Q  196 tttcaatgttctgttcctcaaagtgacaagcatgatgtttttgttagctttagaggtctagatatccgtgaaggttttcttagccatttggttgaagctc 295  Q
    ||||||| |||||||||||||| | ||||| ||||||| |||||||||||| | |||| |||||||||||||| |||||||   |||||| || |||||     
T  7070189 tttcaatcttctgttcctcaaattcacaagtatgatgtctttgttagctttcggggtccagatatccgtgaagtttttcttcctcatttgattaaagctt 7070090  T
Q  296 tatctcgaaagaaaattgttttctttgtagacaataagcttagaaaaggtgatgaaatagcagaatcacttcttgaagctattgaaacatccttgatttc 395  Q
    | |||| |||||||||||||| |||||||||| ||||||||| ||||||  |||||||| || | |||||| ||||||| ||||||||||| |  |||||    
T  7070089 tttctcaaaagaaaattgtttactttgtagactataagcttacaaaaggaaatgaaatatcacagtcactttttgaagcaattgaaacatcttcaatttc 7069990  T
Q  396 tttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagagaaagatg 481  Q
     || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||| ||||||||||||||||    
T  7069989 attagtcatattctctcaaaactatgcttcttcatcttggtgtttggatgagctggtcaaagttgttgactgtagagagaaagatg 7069904  T

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Target: chr8; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 110 - 179
Target Start/End: Complemental strand, 7087389 - 7087320
Alignment:
Q  110 agtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtttat 179  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  7087389 agtagagacacaaaggaagatccacaatgcacaatattaatcttgtattttttgtttgtctcttgtttat 7087320  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 473
Target Start/End: Complemental strand, 7078533 - 7078436
Alignment:
Q  376 attgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagaga 473  Q
    ||||||| ||| || ||||| ||||| |||||||||| ||||| ||| ||||||| ||||||| |||| || ||||| ||||| ||||||||||||||    
T  7078533 attgaaaaatcattcatttcattggttatattctctccaaactttgcatcttcatattggtgtatggaggagcttgtgaaaatagttgagtgtagaga 7078436  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 472
Target Start/End: Original strand, 7028695 - 7028791
Alignment:
Q  376 attgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagag 472  Q
    ||||||| ||| |||||||| ||||||||||| |||| ||||| ||| ||||||  |||||||||||| || ||||| ||||| || ||||| ||||    
T  7028695 attgaaaaatcattgatttcattggtcatattttctccaaactttgcatcttcacattggtgtttggacgagcttgtgaaaatagtcgagtgcagag 7028791  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 472
Target Start/End: Original strand, 7035397 - 7035493
Alignment:
Q  376 attgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagag 472  Q
    ||||||| ||| |||||||| ||||||||||| || | ||||| ||| ||||||  ||||||||||||||| ||||| ||||| || ||||| ||||    
T  7035397 attgaaaaatcattgatttcattggtcatattttcaccaaactttgcatcttcacattggtgtttggatgagcttgtgaaaatagtcgagtgcagag 7035493  T

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Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 180
Target Start/End: Complemental strand, 7070331 - 7070253
Alignment:
Q  99 atcttatgtatagtagagagacaaaggaagaaccacaatgcacaataataatcttgtattttttgtttatctcttgtttatc 180  Q
    |||||||||| |||||||||||||||||| | |||||||||||   | ||||| || ||||||||||| ||| |||||||||    
T  7070331 atcttatgtagagtagagagacaaaggaaaatccacaatgcac---attaatcgtgcattttttgtttgtcttttgtttatc 7070253  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 369 - 464
Target Start/End: Original strand, 7021085 - 7021180
Alignment:
Q  369 tgaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttga 464  Q
    |||||| ||||||| ||| || |||  ||||||||||||||||| ||||| | | | ||||  ||||||||||||||| ||||| ||||| |||||    
T  7021085 tgaagcaattgaaaaatcattcattcatttggtcatattctctccaaacttttcatattcacattggtgtttggatgagcttgtgaaaatagttga 7021180  T

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Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 391 - 477
Target Start/End: Complemental strand, 4220850 - 4220764
Alignment:
Q  391 atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagagaaa 477  Q
    ||||| ||||||||||||||| |||||||||||||||||  ||||||||| || |||||||| |||||  ||||||| |||||||||    
T  4220850 atttcattggtcatattctctgaaaactatgcttcttcacattggtgtttagaagaacttgtaaaaataattgagtgcagagagaaa 4220764  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 368 - 477
Target Start/End: Original strand, 3953034 - 3953143
Alignment:
Q  368 ttgaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtg 467  Q
    ||||||| ||||||  ||| || ||||| ||| ||||||||||  |||||||||||||||||  ||||||||| || |||||||| |||||  |||||||    
T  3953034 ttgaagcaattgaaggatcgttcatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataattgagtg 3953133  T
Q  468 tagagagaaa 477  Q
     |||||||||    
T  3953134 cagagagaaa 3953143  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 370 - 477
Target Start/End: Complemental strand, 4003369 - 4003262
Alignment:
Q  370 gaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgta 469  Q
    ||||| ||||||  ||| || ||||| ||||||||||||||  |||||||||||||||||  ||||||||| || |||||||| |||||  ||||||| |    
T  4003369 gaagcaattgaaggatcattcatttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagaagaacttgtgaaaataattgagtgca 4003270  T
Q  470 gagagaaa 477  Q
     |||||||    
T  4003269 aagagaaa 4003262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 391 - 467
Target Start/End: Complemental strand, 3812039 - 3811963
Alignment:
Q  391 atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtg 467  Q
    ||||| ||||||||||||||  |||||||||||||||||  ||||||||| ||||| ||||| |||||  |||||||    
T  3812039 atttcattggtcatattctcagaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaataattgagtg 3811963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 391 - 458
Target Start/End: Complemental strand, 3821612 - 3821545
Alignment:
Q  391 atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaat 458  Q
    ||||| ||||||||||||||  |||||||||||||||||  ||||||||| ||||| ||||| |||||    
T  3821612 atttcattggtcatattctcaaaaaactatgcttcttcacattggtgtttagatgagcttgtgaaaat 3821545  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 346 - 477
Target Start/End: Original strand, 3915970 - 3916101
Alignment:
Q  346 gatgaaatagcagaatcacttcttgaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatg 445  Q
    ||||| ||| |||| ||||||  |||||| || |||  ||| || ||||| ||| ||||||||||  |||||||||||| ||||  |||||||||  | |    
T  3915970 gatgacatatcagattcacttggtgaagcaatcgaaggatcattcatttcattgatcatattctcagaaaactatgcttgttcacattggtgtttaaaag 3916069  T
Q  446 aacttgtcaaaattgttgagtgtagagagaaa 477  Q
    ||||||| ||||| |||||||||| |||||||    
T  3916070 aacttgtgaaaatagttgagtgtaaagagaaa 3916101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 361 - 458
Target Start/End: Complemental strand, 3988267 - 3988170
Alignment:
Q  361 tcacttcttgaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaat 458  Q
    |||||| ||||||| ||||||   || || ||||| ||||||||||||||  |||| ||| ||||||||  ||||||||| ||||||||||| |||||    
T  3988267 tcacttgttgaagcaattgaaggctcgttaatttcattggtcatattctcaaaaaattattcttcttcacattggtgtttagatgaacttgtgaaaat 3988170  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 454
Target Start/End: Complemental strand, 3825867 - 3825804
Alignment:
Q  391 atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtca 454  Q
    ||||| ||| |||||||||| ||| ||||||||||||||| ||||||||| || |||| |||||    
T  3825867 atttccttgatcatattctcacaagactatgcttcttcatgttggtgtttagaagaacatgtca 3825804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 454
Target Start/End: Complemental strand, 4019624 - 4019561
Alignment:
Q  391 atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtca 454  Q
    ||||| ||| |||||||||| ||| ||||||||||||||   ||||||||||| ||||||||||    
T  4019624 atttccttgatcatattctcacaagactatgcttcttcacgctggtgtttggaagaacttgtca 4019561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 391 - 477
Target Start/End: Complemental strand, 4011827 - 4011741
Alignment:
Q  391 atttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattgttgagtgtagagagaaa 477  Q
    ||||| ||||||||||||||  |||||||||||| ||||  ||||||||| || |||||||  |||||  ||||||| | |||||||    
T  4011827 atttcattggtcatattctcataaaactatgcttgttcacattggtgtttagaagaacttgcgaaaataattgagtgcaaagagaaa 4011741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 454
Target Start/End: Complemental strand, 3805874 - 3805837
Alignment:
Q  417 ctatgcttcttcatcttggtgtttggatgaacttgtca 454  Q
    |||||||||||||| |||||||||||| ||||||||||    
T  3805874 ctatgcttcttcatgttggtgtttggacgaacttgtca 3805837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 477
Target Start/End: Complemental strand, 13399219 - 13399103
Alignment:
Q  361 tcacttcttgaagctattgaaacatccttgatttctttggtcatattctctcaaaactatgcttcttcatcttggtgtttggatgaacttgtcaaaattg 460  Q
    |||||| ||||||| || |||  ||| || ||||| ||| ||||||||||  |||||||||||||||||  ||||||||| || |||||||| |||||      
T  13399219 tcactttttgaagcaatcgaaggatcatttatttcattgatcatattctcagaaaactatgcttcttcacgttggtgtttagaagaacttgtgaaaataa 13399120  T
Q  461 ttgagtgtagagagaaa 477  Q
    ||||||| | |||||||    
T  13399119 ttgagtgcaaagagaaa 13399103  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 441
Target Start/End: Complemental strand, 12782211 - 12782174
Alignment:
Q  404 tattctctcaaaactatgcttcttcatcttggtgtttg 441  Q
    |||||||| ||||||||||||||||| |||||||||||    
T  12782211 tattctctaaaaactatgcttcttcaacttggtgtttg 12782174  T

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