View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14352_low_35 (Length: 211)
Name: NF14352_low_35
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 37127675 - 37127499
Alignment:
| Q |
17 |
atttatttatatctcatagtaagtattatggctaaggtaatgaataattttaactcctattnnnnnnnngtagtgtgacctcctttattcagaatatata |
116 |
Q |
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| T |
37127675 |
atttatttatatctcata---agtattatggctaaggtaatgaataattttaactcctattaaaaaaaagtagtgtgacctcctttattcaaaatatata |
37127579 |
T |
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| Q |
117 |
gttagtaagtacttagtacatttgttactcatatataatataaataaattcaattaacgttctttcaattatatatcctttgct |
200 |
Q |
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| T |
37127578 |
gttagta----cttagtacatttgttactcatatattatataaataaattcaattaacgttctttcaattatatatcctttgct |
37127499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 37120203 - 37120038
Alignment:
| Q |
16 |
catttatttatatctcatagtaagtattatggctaaggtaatgaataattttaactcctattnnnnnnnngtagtgtgacctcctttattcagaatatat |
115 |
Q |
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| T |
37120203 |
catttatttatatctcata---agtattatggctaaggtaacgaataa-ttaaactcctcct------aagtagtgtgacctcctttattcaataaatat |
37120114 |
T |
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| Q |
116 |
agttagtaagtacttagtacatttgttactcatatataatataaataaattcaattaacgttctttcaattatatatcctttg |
198 |
Q |
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| T |
37120113 |
atata-tatatagttagtacatttgtta--catatataat----ataaattcatttcacgtactttcaattatatatcctttg |
37120038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 1193323 - 1193418
Alignment:
| Q |
18 |
tttatttatatctcatagtaagtattatggctaaggtaatgaataattttaactcctattnnnnnnnngtagtgtgacctcctttattcagaatatatag |
117 |
Q |
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| T |
1193323 |
tttatttatatctcata---agtattacggctaaggtaatgaataa-tttaactcctgct------aagtagtgttacctcctttattcaaaatatatag |
1193412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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