View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14352_low_4 (Length: 480)
Name: NF14352_low_4
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 33 - 464
Target Start/End: Complemental strand, 3946600 - 3946169
Alignment:
| Q |
33 |
ttatacttatgagctcaaataaaatgaagataaaatggataactaactctatttatagaaacatgttaacaaacttttaactatatatttaatatttaca |
132 |
Q |
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| T |
3946600 |
ttatacttatgagctcaaataaaatgaagataaaatggataactaactctatttatagaaacatgttaacaaaattttaactatatatttaatatttaca |
3946501 |
T |
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| Q |
133 |
tacataaagataacaggagaagaacatttaataatgtgtacctggtttgatgcaagaacagcaatcttatacttaggatcaagagctggcacttttagaa |
232 |
Q |
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| T |
3946500 |
tacatgaagataacaggagaagaacatttaataatgtgtacctggtttgatgcaagaacagcaatcttatatttaggatcaagagctggcacttttagaa |
3946401 |
T |
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| Q |
233 |
tagatctcacagcattatatgttttagagatttttaagaaatcctcttccattcgtaatcgaggccatttaacatgatcaaaaacaaaatcgctgtaata |
332 |
Q |
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| T |
3946400 |
tagatctcacagcattatatgttttagagatttttaagaaatcctcttccattcgtaatcgaggccatttaacatgatcaaaaacaaaatcgctgtaata |
3946301 |
T |
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| Q |
333 |
ataatgagaacattaaatgatttattttaagataaaagacaaataatgcatgagtaattattagcacatacgttcttgagtagaagagtcctttattttg |
432 |
Q |
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| T |
3946300 |
ataatgagaacattaaatgatttattttaagataaaagacaaataatgcatgagtaattattagtacatacgttcttgagtagaagagtcctttattttg |
3946201 |
T |
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| Q |
433 |
aggtacaaaaacatccgcagcaataatgttac |
464 |
Q |
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| T |
3946200 |
aggtacaaaaacatccgcagcaataatgttac |
3946169 |
T |
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