View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14352_low_5 (Length: 470)
Name: NF14352_low_5
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 130 - 466
Target Start/End: Complemental strand, 29931291 - 29930955
Alignment:
| Q |
130 |
gataatgcagcaaattgtacaaaagtgcttttgattttagaatcagtgaacaaaaattagacaacacacaatttcaaatgcttgtggaaacaaaggaatg |
229 |
Q |
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| T |
29931291 |
gataatgcagcaaattgtacaaaaatgcttttgattttagaatcagtgaacaaaaattagacaacacacaatttcaaatgcttgtggaaacaaaggaatg |
29931192 |
T |
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| Q |
230 |
aaaccagaatttgatgatgcaagatctataaataaacttgaaggagaaagaggagtgaacacaattgattgttaaagaaattcagagcaatgtgctccta |
329 |
Q |
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| T |
29931191 |
aaaccagaatttgatgatgcaagatctataaataaacttgaaggagaaagaggagtcaacacaattgattgttaaagaaattcagagcaatgtgctccta |
29931092 |
T |
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| Q |
330 |
catctctgaggtagcatcctactgcaaaaaacactgaatttgagggtttaaaccttaatcttcaggcatgattcaacaaggaatcatccagaatctctca |
429 |
Q |
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| T |
29931091 |
catctctgaggtagcatcctactgcaaaaaacactgaatttgagggtttaaaccttaatcttcaggcatgattcaacaaggaatcatccagaatctctca |
29930992 |
T |
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| Q |
430 |
gtgatatcctctcttggtttattttttcttctctctc |
466 |
Q |
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| T |
29930991 |
gtgatatcctctcttggtttattttttcttctctctc |
29930955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 29932832 - 29932716
Alignment:
| Q |
11 |
tttcgtcatcggattcaactgctcatttttctggaaatcatcatatctgatatcacccttggcctaacattagaaaccttaaatcagaaaattgaactta |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29932832 |
tttcgtcatcggattcaactgctcatttttctggaaatcatcatatctgatatcacccttggcctaacattagaaaccttaaatcagaaaattaaactta |
29932733 |
T |
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| Q |
111 |
tgaatttccacataata |
127 |
Q |
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| T |
29932732 |
tgaatttccacataata |
29932716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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