View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14352_low_6 (Length: 468)
Name: NF14352_low_6
Description: NF14352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14352_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 14 - 464
Target Start/End: Complemental strand, 3126591 - 3126145
Alignment:
| Q |
14 |
gttttttcttcccatttcattattgtttgtttagtaaatcatttgtgactgattttttgtatcccttaaataactatccctaatgagaaatttcagttaa |
113 |
Q |
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| T |
3126591 |
gttttttcttcccatttcaatattgttt----agtaaatcatttgtgactgattttttgtatcccttaaataactatccctaatgagaaatttcagttaa |
3126496 |
T |
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| Q |
114 |
attttgtctagctaagatttatgcgtatgcagctaaattcccttggttttatttcagttccataattaaaatttgatatgggttgtccatatgtatctgc |
213 |
Q |
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| T |
3126495 |
attttgtctagctaagatttatgcgtatgtagctaaattcccttggttttatttcagttccataattaaaatttgatatgggttgtccatatgtatctgc |
3126396 |
T |
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| Q |
214 |
atgttaaacacaggagtaaatgtagtcttgaatttatttcaggagtgagtttgggagaaggaagtggtgcgacaatgtcggatgatgaagatgaacaatt |
313 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3126395 |
atgttaaacacaggagtaaatgtagtattgaatttatttcaggagtgagtttgggagaaggaagtggtgcgacaatgtcggatgatgaagatgaacaatt |
3126296 |
T |
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| Q |
314 |
gcaggtggattatggtttagataatcagtcaagtggtggtggtggtgatcatgacatgatgggacttggtccattacttcctactgaatctgaaagttca |
413 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3126295 |
gcagatggattatggtttagataatcagtcaagtggtggtggtggtgatcatgacatgatgggacttggtccattacttcctactgaatctgaaaggtca |
3126196 |
T |
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| Q |
414 |
ctcatggaacgagttcgtcaagaactcaaaattgagctcaaacaggtctgt |
464 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3126195 |
ctcatggaacgagttcgtcaagaactcaaaattgagctcaaacaggtctgt |
3126145 |
T |
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