View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14353_high_10 (Length: 615)
Name: NF14353_high_10
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_high_10 |
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| [»] scaffold0651 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 565; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 10 - 598
Target Start/End: Complemental strand, 31321947 - 31321359
Alignment:
| Q |
10 |
aagaaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321947 |
aagaaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtgatcataggattaacaccaacagcagttggaagaacactagcatcacaa |
31321848 |
T |
|
| Q |
110 |
acaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321847 |
acaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaag |
31321748 |
T |
|
| Q |
210 |
tatacaaattccaattctcacctggcgacaatgctccttccattggataaacactatctataaactcttcaatttccttttcgccagtgttctcattaca |
309 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321747 |
tatacaaattccaattctcacctggccacaatgctccttccattggataaacactatctataaactcttcaatttccttttcgccagtgttctcattaca |
31321648 |
T |
|
| Q |
310 |
cttaattctctgaccatcacttctgtgtgttcctacttcaactgctcctgctgctattagaattcttagtccttgttgtaaaccagctctcatattctct |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31321647 |
cttaattctctgaccatcacttctgtgtgttcctacttcaactgctcctgctgctattagaattcttagtccttgttgtaaaccagctctcatattctct |
31321548 |
T |
|
| Q |
410 |
ctatcaattgaattcaatttgtagctgattcttccctctgtttttacttgtccacttgctttgtctcttattattgtgattaagtgtgctgttcttggat |
509 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31321547 |
ctgtcaattgaattcaatttgtagctgattcttccctctgtttttacttgtccacttgctttgtctcttattattgtgattaagtgtgctgttcttggat |
31321448 |
T |
|
| Q |
510 |
attttatcattctttgtttgaagtcaagtcctgattcccatggatatattgatgcaaatgatgatggtcctagtaatggtgtctcaatt |
598 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
31321447 |
attttagcattctttgtttgaagtcaagtcctgattcccatggatatattgatgcaaatgatgatggtcctagtaacggtgtttcaatt |
31321359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 10 - 598
Target Start/End: Complemental strand, 31334200 - 31333612
Alignment:
| Q |
10 |
aagaaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31334200 |
aagaaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtgatcataggattaacaccaacagcagttggaagaacactagcatcacaa |
31334101 |
T |
|
| Q |
110 |
acaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31334100 |
acaaacaacccttcagcttcccaactctcaccattttcatcaacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaag |
31334001 |
T |
|
| Q |
210 |
tatacaaattccaattctcacctggcgacaatgctccttccattggataaacactatctataaactcttcaatttccttttcgccagtgttctcattaca |
309 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| |
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|
| T |
31334000 |
tatacaaattccaattctcacctggccacaatgctccttccattggataaacactatctataaactcttcaatttccttctcactggtgttctcattaca |
31333901 |
T |
|
| Q |
310 |
cttaattctctgaccatcacttctgtgtgttcctacttcaactgctcctgctgctattagaattcttagtccttgttgtaaaccagctctcatattctct |
409 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| ||||||||||||||| |
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|
| T |
31333900 |
cttaattctctgaccaccacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccggctctcatattctct |
31333801 |
T |
|
| Q |
410 |
ctatcaattgaattcaatttgtagctgattcttccctctgtttttacttgtccacttgctttgtctcttattattgtgattaagtgtgctgttcttggat |
509 |
Q |
| |
|
| || |||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| || || |||||||||||||||| |
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|
| T |
31333800 |
ttgtcgattgaattcaatttgtagctgattcttcgctctgttgttacttgtccaccagctttgtctcttattattgttatgaaatgtgctgttcttggat |
31333701 |
T |
|
| Q |
510 |
attttatcattctttgtttgaagtcaagtcctgattcccatggatatattgatgcaaatgatgatggtcctagtaatggtgtctcaatt |
598 |
Q |
| |
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| |||| ||||||||||||| |||| |||||||||||||||||||||| || || ||||||||||||||||||||| ||||| |||||| |
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|
| T |
31333700 |
aatttagcattctttgtttgtagtccagtcctgattcccatggatatagtgctgaaaatgatgatggtcctagtaacggtgtttcaatt |
31333612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0651 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0651
Description:
Target: scaffold0651; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 296 - 598
Target Start/End: Original strand, 2010 - 2312
Alignment:
| Q |
296 |
gtgttctcattacacttaattctctgaccatcacttctgtgtgttcctacttcaactgctcctgctgctattagaattcttagtccttgttgtaaaccag |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||| | |
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|
| T |
2010 |
gtgttctcattacacttaattctctgaccaccacttctgtgtgttcctacttcaactgctcctgctgctattaaaattcttagtgcttgttgtataccgg |
2109 |
T |
|
| Q |
396 |
ctctcatattctctctatcaattgaattcaatttgtagctgattcttccctctgtttttacttgtccacttgctttgtctcttattattgtgattaagtg |
495 |
Q |
| |
|
|||||||||||||| | || |||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||| || || || |
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|
| T |
2110 |
ctctcatattctctttgtcgattgaattcaatttgtagctgattcttcgctctgttgttacttgtccaccagctttgtctcttattattgttatgaaatg |
2209 |
T |
|
| Q |
496 |
tgctgttcttggatattttatcattctttgtttgaagtcaagtcctgattcccatggatatattgatgcaaatgatgatggtcctagtaatggtgtctca |
595 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||| |||| |||||||||||||||||||||| || || ||||||||||||||||||||| ||||| ||| |
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|
| T |
2210 |
tgctgttcttggataatttagcattctttgtttgtagtccagtcctgattcccatggatatagtgctgaaaatgatgatggtcctagtaacggtgtttca |
2309 |
T |
|
| Q |
596 |
att |
598 |
Q |
| |
|
||| |
|
|
| T |
2310 |
att |
2312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 324 - 434
Target Start/End: Original strand, 22513561 - 22513672
Alignment:
| Q |
324 |
catcacttctgtgtgttcctacttcaactgctcctgctgctattagaattcttagtccttgttgtaaaccagctctcata-ttctctctatcaattgaat |
422 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||||||||| ||||| || | | ||||||||||||||||||||||| || || ||||||||||||| |
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|
| T |
22513561 |
catcacttctgcgtgtttctacttcaactgttcctgctgctatcagaatcctcattgcttgttgtaaaccagctctcatatttttccctatcaattgaat |
22513660 |
T |
|
| Q |
423 |
tcaatttgtagc |
434 |
Q |
| |
|
|||||||||||| |
|
|
| T |
22513661 |
tcaatttgtagc |
22513672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 50 - 208
Target Start/End: Complemental strand, 39110562 - 39110404
Alignment:
| Q |
50 |
gattgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcat |
149 |
Q |
| |
|
|||||||| || | |||||| ||||||||||| ||| | || | |||||| ||||||| ||| ||||||||| ||||||||||| || ||||| |||| |
|
|
| T |
39110562 |
gattgaatggttaccatagggttaacaccaactgcactaggcaaaacacttccatcacacacatacaacccttttgcttcccaactttctccattctcat |
39110463 |
T |
|
| Q |
150 |
caacagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaa |
208 |
Q |
| |
|
|||| ||||| || | ||||||| |||||||||||||| ||||||||||| |||||| |
|
|
| T |
39110462 |
caactgcaccctcttcttcattcttacccattctacaacttcccatttgatgtgcagaa |
39110404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 33521062 - 33521232
Alignment:
| Q |
53 |
tgaatagtaatcataggattaacaccaacagcagttggaagaacactagcatcacaaacaaacaacccttcagcttcccaactctcaccattttcatcaa |
152 |
Q |
| |
|
|||||||| ||||| ||||| | ||| | |||||||||| | ||| |||||||| ||||| | ||||||||||||||| ||| ||||||||||||| |
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|
| T |
33521062 |
tgaatagttatcatgggattgatacctatggcagttggaaacaaacttgcatcacacacaaatagtccttcagcttcccaattctgtccattttcatcaa |
33521161 |
T |
|
| Q |
153 |
cagcaccttccttttcattcactcccattctacaactccccatttgatgagcagaagtatacaaattccaa |
223 |
Q |
| |
|
| | |||||||| ||| | | ||| || |||||||||||||| || |||||||| | ||||| ||||||| |
|
|
| T |
33521162 |
ccgtgccttccttatcagtgattcctatcctacaactccccatctggtgagcagatgcatacatattccaa |
33521232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 10926351 - 10926283
Alignment:
| Q |
13 |
aaaatctacaatcctatttgaaatacaaaatgcagttgattgaatagtaatcataggattaacaccaaca |
82 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||| || | ||||||||||| |||| |
|
|
| T |
10926351 |
aaaatttacaatc-tatttgaaatacaaaatgcagttgattgaatagttattagaggattaacactaaca |
10926283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 33521319 - 33521372
Alignment:
| Q |
313 |
aattctctgaccatcacttctgtgtgttcctacttcaactgctcctgctgctat |
366 |
Q |
| |
|
||||||||| |||||||||||||| || ||||| ||||||||||| |||||||| |
|
|
| T |
33521319 |
aattctctgtccatcacttctgtgagtacctacctcaactgctccagctgctat |
33521372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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