View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_high_14 (Length: 563)
Name: NF14353_high_14
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Complemental strand, 7035970 - 7035431
Alignment:
| Q |
1 |
gttgtgttaatactttctcccaattaatattacatgaaatagataaaaagataaatcccacaagtaaacacaactcaataataagcatcaaggtttcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7035970 |
gttgtgttaatactttctcccaattaatattacatgaaatagataaaaagataaatcccacaagtaaacacaacccaataataagcatcaaggtttcctt |
7035871 |
T |
|
| Q |
101 |
atcattcgcttcatccatgttttcgtccttttctccctagctgttctgctttgtcatacaaaccttgattacaagaagtcaaaatcatatcagggacaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7035870 |
atcattcgcttcatccatgttttcgtccttttctccctagctcttccgctttgtcatacaaaccttgattacaagaagtcaaaatcatatcagggacaaa |
7035771 |
T |
|
| Q |
201 |
tagtgtaataagagatagattggtagataaaaaagggaataggttgaacacaaaaagatattgagcataagattcatattttatgcaagagttacgcaat |
300 |
Q |
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|||||||||||||||| ||| | || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
7035770 |
tagtgtaataagagattgatagata---aaaaaagggaataggttgaacaca----gatattgagcataagattcatattttatgcaagaattacgcaat |
7035678 |
T |
|
| Q |
301 |
gcaaagtcaatagatattgatttcaaacatctcacaattccaaaacaagataactactatgccaccagcacaatatattgctcagttacataatcataca |
400 |
Q |
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| T |
7035677 |
gcaaagtcaatagatattgatttcaaacatctcacaattccaaaacaagataactactatgccaccagcacaatatattgctcagttacataatcataca |
7035578 |
T |
|
| Q |
401 |
aggcttttgttgttgtatatgcctccttggccaacttcatatagtgtagccaataaccaaatttaaaaagttattggatcatattgtaccagtaaattct |
500 |
Q |
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| T |
7035577 |
aggcttttgttgttgtatatgcctccttggccaacttcatatagtgtagccaataaccaaatttaaaaagttattggatcatattgtactgggaaattct |
7035478 |
T |
|
| Q |
501 |
tcattatggtacaaaaggggacccacttgacccaaatgtgctacaag |
547 |
Q |
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| T |
7035477 |
tcattatggtacaaaaggggacccacttgacccaaatgtgctacaag |
7035431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 494 - 547
Target Start/End: Original strand, 39746048 - 39746101
Alignment:
| Q |
494 |
aaattcttcattatggtacaaaaggggacccacttgacccaaatgtgctacaag |
547 |
Q |
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| T |
39746048 |
aaattcttcattatggtacaaaaggggacccacttgacccaaatgtgctacaag |
39746101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 363
Target Start/End: Complemental strand, 28094911 - 28094857
Alignment:
| Q |
309 |
aatagatattgatttcaaacatctcacaattccaaaacaagataactactatgcc |
363 |
Q |
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|||||||||| ||||||||||||||| |||| ||||||||||||| |||| |||| |
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| T |
28094911 |
aatagatattaatttcaaacatctcataattacaaaacaagataattactctgcc |
28094857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 215
Target Start/End: Complemental strand, 28095087 - 28094989
Alignment:
| Q |
117 |
atgttttcgtccttttctccctagctgttctgctttgtcatacaaaccttgattacaagaa-gtcaaaatcatatcagggacaaatagtgtaataagaga |
215 |
Q |
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||||||||||| |||| ||| | | | |||||||||||| ||||| ||||| |||||| || || |||||||||||||||||||| | ||||||||||| |
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| T |
28095087 |
atgttttcgtcattttatcctttgttcttctgctttgtcctacaa-ccttgcttacaacaaagtgaaaatcatatcagggacaaaaaaagtaataagaga |
28094989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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