View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14353_high_18 (Length: 525)

Name: NF14353_high_18
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14353_high_18
NF14353_high_18
[»] chr1 (20 HSPs)
chr1 (255-516)||(38926209-38926470)
chr1 (19-260)||(38925947-38926184)
chr1 (19-71)||(14098459-14098511)
chr1 (19-70)||(47451405-47451456)
chr1 (19-71)||(6822774-6822826)
chr1 (19-71)||(13761576-13761628)
chr1 (19-70)||(15823286-15823337)
chr1 (19-70)||(49687301-49687352)
chr1 (24-70)||(41646681-41646727)
chr1 (22-71)||(51752103-51752152)
chr1 (24-65)||(28207540-28207581)
chr1 (19-71)||(47179427-47179479)
chr1 (19-71)||(10400318-10400370)
chr1 (22-70)||(39462258-39462306)
chr1 (24-71)||(3580113-3580160)
chr1 (25-71)||(47177077-47177123)
chr1 (21-70)||(20291280-20291329)
chr1 (21-70)||(28840418-28840467)
chr1 (22-70)||(51749778-51749826)
chr1 (22-70)||(13461344-13461392)
[»] chr3 (18 HSPs)
chr3 (19-70)||(32264529-32264580)
chr3 (23-71)||(32218835-32218883)
chr3 (19-71)||(18097371-18097423)
chr3 (19-71)||(18099656-18099708)
chr3 (19-71)||(26720267-26720319)
chr3 (22-70)||(48362138-48362186)
chr3 (19-73)||(38210064-38210118)
chr3 (22-71)||(25388617-25388666)
chr3 (19-71)||(7606912-7606964)
chr3 (19-70)||(50493676-50493727)
chr3 (19-70)||(53896703-53896754)
chr3 (22-71)||(22114794-22114843)
chr3 (22-70)||(3859317-3859365)
chr3 (22-70)||(6066243-6066291)
chr3 (27-71)||(10956520-10956564)
chr3 (24-76)||(18162399-18162451)
chr3 (26-70)||(24176999-24177043)
chr3 (22-70)||(45882659-45882707)
[»] chr2 (9 HSPs)
chr2 (19-72)||(40032535-40032588)
chr2 (17-67)||(6259301-6259351)
chr2 (19-71)||(21521183-21521235)
chr2 (19-70)||(45332624-45332675)
chr2 (21-71)||(19502501-19502551)
chr2 (26-71)||(18800775-18800820)
chr2 (19-71)||(36559307-36559359)
chr2 (19-71)||(43624034-43624086)
chr2 (19-70)||(36561626-36561677)
[»] chr5 (25 HSPs)
chr5 (20-71)||(659712-659763)
chr5 (20-71)||(21947769-21947820)
chr5 (19-71)||(20504401-20504453)
chr5 (24-71)||(31466450-31466497)
chr5 (24-70)||(20507955-20508001)
chr5 (19-71)||(21684918-21684970)
chr5 (19-71)||(34479921-34479973)
chr5 (20-70)||(661236-661286)
chr5 (21-70)||(2174680-2174729)
chr5 (22-71)||(31179885-31179934)
chr5 (22-70)||(25921944-25921992)
chr5 (19-71)||(31544797-31544849)
chr5 (19-71)||(34477581-34477633)
chr5 (19-71)||(12556390-12556442)
chr5 (19-70)||(39797849-39797900)
chr5 (20-70)||(2818796-2818847)
chr5 (21-70)||(16775897-16775946)
chr5 (19-71)||(38960553-38960605)
chr5 (19-70)||(10749505-10749556)
chr5 (43-71)||(10756959-10756987)
chr5 (43-71)||(15355038-15355066)
chr5 (43-71)||(15357314-15357342)
chr5 (19-70)||(18186536-18186587)
chr5 (43-71)||(23667108-23667136)
chr5 (19-70)||(31542442-31542493)
[»] chr4 (14 HSPs)
chr4 (19-71)||(48486112-48486164)
chr4 (19-70)||(7941133-7941184)
chr4 (19-71)||(36920075-36920126)
chr4 (22-65)||(52942959-52943002)
chr4 (19-71)||(3825061-3825113)
chr4 (19-71)||(16932309-16932361)
chr4 (19-70)||(11434769-11434820)
chr4 (19-70)||(16934663-16934714)
chr4 (19-70)||(5637955-5638006)
chr4 (20-71)||(9174635-9174685)
chr4 (19-70)||(36921983-36922033)
chr4 (25-70)||(9176990-9177035)
chr4 (19-71)||(22780901-22780953)
chr4 (19-70)||(22783266-22783317)
[»] scaffold0068 (1 HSPs)
scaffold0068 (19-71)||(28940-28992)
[»] chr6 (14 HSPs)
chr6 (22-70)||(1072347-1072395)
chr6 (22-70)||(15541631-15541679)
chr6 (22-70)||(24191620-24191668)
chr6 (22-70)||(24192717-24192765)
chr6 (19-70)||(15530610-15530661)
chr6 (19-71)||(33308684-33308736)
chr6 (19-71)||(33310953-33311005)
chr6 (19-70)||(14507665-14507716)
chr6 (19-70)||(8995255-8995306)
chr6 (19-70)||(9019702-9019753)
chr6 (25-70)||(26068837-26068882)
chr6 (22-71)||(15533172-15533221)
chr6 (43-71)||(26066584-26066612)
chr6 (19-70)||(29755228-29755279)
[»] chr7 (15 HSPs)
chr7 (19-70)||(27306717-27306767)
chr7 (19-71)||(1047452-1047504)
chr7 (19-71)||(26804344-26804396)
chr7 (22-70)||(40837213-40837261)
chr7 (19-70)||(3878322-3878373)
chr7 (19-70)||(18567363-18567414)
chr7 (19-70)||(31435535-31435586)
chr7 (32-70)||(42006316-42006354)
chr7 (43-72)||(22107865-22107894)
chr7 (22-71)||(22392291-22392340)
chr7 (43-72)||(40549625-40549654)
chr7 (19-70)||(2935070-2935121)
chr7 (19-70)||(9027636-9027687)
chr7 (43-71)||(22136877-22136905)
chr7 (43-71)||(40551904-40551932)
[»] chr8 (10 HSPs)
chr8 (21-70)||(12517516-12517565)
chr8 (25-73)||(43079344-43079392)
chr8 (19-71)||(15067776-15067828)
chr8 (19-71)||(15072505-15072557)
chr8 (19-70)||(18810483-18810534)
chr8 (19-71)||(18812667-18812719)
chr8 (19-71)||(27826781-27826833)
chr8 (19-71)||(27829092-27829144)
chr8 (25-71)||(43081721-43081767)
chr8 (20-66)||(28252076-28252122)
[»] scaffold0127 (1 HSPs)
scaffold0127 (23-70)||(13007-13054)
[»] scaffold0131 (1 HSPs)
scaffold0131 (24-69)||(14768-14814)
[»] scaffold0472 (1 HSPs)
scaffold0472 (19-70)||(5927-5978)
[»] scaffold0140 (2 HSPs)
scaffold0140 (43-71)||(21914-21942)
scaffold0140 (43-71)||(24189-24217)
[»] scaffold0025 (1 HSPs)
scaffold0025 (20-71)||(69783-69834)


Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 255 - 516
Target Start/End: Original strand, 38926209 - 38926470
Alignment:
Q  255 ttaatctaagagttaacaatatggtgtgacacaagtgataaatacttgagttatctaattatttttacgaaggattcgacccatatgtatggatttgaca 354  Q
    ||||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||    
T  38926209 ttaatctaagacttaataacatggtgtaacacaagtgataaatacttgagtcatctaattattttcacaaaggattcgacccatatgtatggatttgaca 38926308  T
Q  355 gaatgagtgtgccactctaatttcatatactttagagctttaacaaaatcatgatgtcgtagtaatttttcaatctatccgtcaactcaaacatgcattt 454  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  38926309 gaatgagtgtgcctctctaatttcatatactttagagctttaacaaaatcatgatgtcgtagtaagttctcaatatatccgtcaactcaaacatgcattt 38926408  T
Q  455 tccctaatatgatcaaacaacccattttggggaattttaaaggaatatatacatatacattg 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38926409 tccctaatatgatcaaacaacccattttggggaattttaaaggaatgtatacatatacattg 38926470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 38925947 - 38926184
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaagtatgaattgaaattggtattttagtgtttttaacactcacaaattg 118  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||    |||||||||||||||||||||| | |||||||||||||||||||||    
T  38925947 cagccatcgtaccacgatttctgcggaacctgattttaagttaactctca----tatgaattgaaattggtattttggagtttttaacactcacaaattg 38926042  T
Q  119 tgcaccaggcacatgcacatgccgtacactttgtggcatctttaactaaaagaaagtgagtacaaagaaaataatctgcgagttcaatcataaagggaaa 218  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38926043 tgcaccaggcacatgcacctgccgtacactttgtggcatctttaactaaaagaaagtgagtacaaagaaaataatctgcgagttcaatcataaatggaaa 38926142  T
Q  219 agaaagtgagtgcaaaggattgggggtttaattaatttaatc 260  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  38926143 agaaagtgagtgcaaaggattgcgtgtttaattaatttaatc 38926184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 14098459 - 14098511
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||||||||||||||  || ||||||||||||||||||||||||    
T  14098459 cagccatcgtgccacgatttctgcagaatctgattttaagttaactctcacaa 14098511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 47451456 - 47451405
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||||||||||    
T  47451456 cagccatcgtgccacgatttctgcaaaatctgatttgaagttaactctcaca 47451405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 6822826 - 6822774
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  6822826 cagccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 6822774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 13761628 - 13761576
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  13761628 cagccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 13761576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 15823337 - 15823286
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||||||| ||||  | ||||||||||||||||||||||||    
T  15823337 cagccatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 15823286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 49687352 - 49687301
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||||||| ||||||||||||| |  ||||||||||||||||||||||||||    
T  49687352 cagccatcatgccacgatttctacataacctgattttaagttaactctcaca 49687301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 41646727 - 41646681
Alignment:
Q  24 atcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||||    
T  41646727 atcgtgccacgatttctgcagaacatgattttaagttaactctcaca 41646681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 51752152 - 51752103
Alignment:
Q  22 ccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  51752152 ccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 51752103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 28207540 - 28207581
Alignment:
Q  24 atcgtgccacgatttctgcgaaacctgattttaagttaactc 65  Q
    |||||||||||||||||||  |||||||||||||||||||||    
T  28207540 atcgtgccacgatttctgcagaacctgattttaagttaactc 28207581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 47179479 - 47179427
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  47179479 cagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 47179427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 10400318 - 10400370
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    |||| |||||||||||||| |   |||||||||||||||||||||||||||||    
T  10400318 cagcaatcgtgccacgattccgcagaaacctgattttaagttaactctcacaa 10400370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 39462306 - 39462258
Alignment:
Q  22 ccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||| ||| ||||||||||||  ||||||||||||||||||||||||||    
T  39462306 ccattgtgtcacgatttctgcagaacctgattttaagttaactctcaca 39462258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 3580113 - 3580160
Alignment:
Q  24 atcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||| ||||  ||||||||||||||||||||| |||||    
T  3580113 atcgtgccacgattcctgcataacctgattttaagttaactcccacaa 3580160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 47177123 - 47177077
Alignment:
Q  25 tcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  47177123 tcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 47177077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 20291329 - 20291280
Alignment:
Q  21 gccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||||| |||| |||| |||||||||||||||||||||||    
T  20291329 gccatcgtgccacgatt-ctgcagaaatctgattttaagttaactctcaca 20291280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 28840467 - 28840418
Alignment:
Q  21 gccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||||| ||||  | |||||||||||||||||| |||||    
T  28840467 gccatcgtgccacgattcctgcagatcctgattttaagttaactttcaca 28840418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 51749826 - 51749778
Alignment:
Q  22 ccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    |||||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  51749826 ccatcgtgccacgatt-ctgcagaaacttgattttaagttaactctcaca 51749778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 13461344 - 13461392
Alignment:
Q  22 ccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||||||| ||||||| ||||  | ||||||||||||||||||||||||    
T  13461344 ccatcgtggcacgattcctgcagatcctgattttaagttaactctcaca 13461392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 32264529 - 32264580
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32264529 cagccatcgtgccacgatttctgcaaaacctgattttaagttaactctcaca 32264580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 32218883 - 32218835
Alignment:
Q  23 catcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||    
T  32218883 catcgtgccacgatttctgcagaacctgattttaagttaactctcacaa 32218835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 18097371 - 18097423
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  18097371 cagccatcgtgccacgattt-tgcagaaacctgattttaagttaactctcacaa 18097423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 18099656 - 18099708
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  18099656 cagccatcgtgccacgattt-tgcagaaacctgattttaagttaactctcacaa 18099708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 26720319 - 26720267
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||||||||| ||||  | |||||||||||||||||||||||||    
T  26720319 cagccatcgtgccacgattcctgcagatcctgattttaagttaactctcacaa 26720267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 48362138 - 48362186
Alignment:
Q  22 ccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  48362138 ccatcgtgccacgatttctacagaacctgattttaagttaactctcaca 48362186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 38210118 - 38210064
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaagt 73  Q
    ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  38210118 cagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaagt 38210064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 25388666 - 25388617
Alignment:
Q  22 ccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  25388666 ccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 25388617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 7606912 - 7606964
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||| ||||||| |||| |||||||||||||||||||||||||||||    
T  7606912 cagccatcgtgtcacgatt-ctgcagaaacctgattttaagttaactctcacaa 7606964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 50493727 - 50493676
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    |||| |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  50493727 cagctatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 50493676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 53896703 - 53896754
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    |||| |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  53896703 cagcaatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 53896754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 22114794 - 22114843
Alignment:
Q  22 ccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||| || | |||||||||||||||||||||||||||||    
T  22114794 ccatcgtgccacgatt-ctacagaaacctgattttaagttaactctcacaa 22114843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 3859365 - 3859317
Alignment:
Q  22 ccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  3859365 ccatcgtgccacgatta-tgcagaaacctgattttaagttaactctcaca 3859317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 6066243 - 6066291
Alignment:
Q  22 ccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    |||||||||||| ||| |||| ||||||||||||||||||||||||||||    
T  6066243 ccatcgtgccacaatt-ctgcagaaacctgattttaagttaactctcaca 6066291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 10956520 - 10956564
Alignment:
Q  27 gtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||| ||||  | |||||||||||||||||||||||||    
T  10956520 gtgccacgattcctgcagatcctgattttaagttaactctcacaa 10956564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 18162451 - 18162399
Alignment:
Q  24 atcgtgccacgatttctgcgaaacctgattttaagttaactctcacaagtatg 76  Q
    |||||| |||||||| |||  | |||||||||||||||||||||||| |||||    
T  18162451 atcgtggcacgatttatgcagatcctgattttaagttaactctcacacgtatg 18162399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 24177043 - 24176999
Alignment:
Q  26 cgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||| |  ||| ||||||||||||||||||||||    
T  24177043 cgtgccacgatttctccagaacttgattttaagttaactctcaca 24176999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 45882707 - 45882659
Alignment:
Q  22 ccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||||||| |||||||| |||  | ||||||||||||||||||||||||    
T  45882707 ccatcgtggcacgatttttgcagatcctgattttaagttaactctcaca 45882659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 40032535 - 40032588
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaag 72  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  40032535 cagccatcgtgccacgatttctgcagaacctgattttaagttaactctcacaag 40032588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 6259301 - 6259351
Alignment:
Q  17 cacagccatcgtgccacgatttctgcgaaacctgattttaagttaactctc 67  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  6259301 cacagccatcgtgccacgatttctgcagaacctgattttaagttaactctc 6259351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 21521183 - 21521235
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||||||||| |||   |||||||||||||||||||||||||||    
T  21521183 cagccatcgtgccacgattcctgtagaacctgattttaagttaactctcacaa 21521235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 45332624 - 45332675
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  45332624 cagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 45332675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 19502501 - 19502551
Alignment:
Q  21 gccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||||||| |||| |||||||||||||||||||||| ||||||    
T  19502501 gccatcgtgccacgatt-ctgcagaaacctgattttaagttaactatcacaa 19502551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 71
Target Start/End: Original strand, 18800775 - 18800820
Alignment:
Q  26 cgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||||| |  ||| |||||||||||||||||||||||    
T  18800775 cgtgccacgatttctccagaacatgattttaagttaactctcacaa 18800820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 36559307 - 36559359
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||| |||||||||||||  ||| |||||||||||||||||||||||||||||    
T  36559307 cagccgtcgtgccacgattg-tgcagaaacctgattttaagttaactctcacaa 36559359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 43624034 - 43624086
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||| |||| |||| |||||||||||||||||||||| ||||||    
T  43624034 cagccatcgtgccatgatt-ctgcagaaacctgattttaagttaactttcacaa 43624086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 36561626 - 36561677
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||| |||||||||||||  ||| ||||||||||||||||||||||||||||    
T  36561626 cagccgtcgtgccacgattg-tgcagaaacctgattttaagttaactctcaca 36561677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 659763 - 659712
Alignment:
Q  20 agccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  659763 agccatcgtgccacgatttctgcagaacctgattttaagttaactctcacaa 659712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 21947820 - 21947769
Alignment:
Q  20 agccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  21947820 agccatcgtgccacgatttctgcagaacctgattttaagttaactctcacaa 21947769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 20504401 - 20504453
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    |||| |||||||||||||||||||  |||||||||||||||||||||||||||    
T  20504401 cagctatcgtgccacgatttctgcagaacctgattttaagttaactctcacaa 20504453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 31466450 - 31466497
Alignment:
Q  24 atcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||||    
T  31466450 atcgtgccacgattcctgcaaaacctgattttaagttaactctcacaa 31466497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 20507955 - 20508001
Alignment:
Q  24 atcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||    
T  20507955 atcgtgccacgatttctgcagaacctgattttaagttaactctcaca 20508001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 21684918 - 21684970
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  21684918 cagccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 21684970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 34479921 - 34479973
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  34479921 cagccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 34479973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 661236 - 661286
Alignment:
Q  20 agccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    ||||||| | |||||||||||||  ||||||||||||||||||||||||||    
T  661236 agccatcataccacgatttctgcagaacctgattttaagttaactctcaca 661286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 2174729 - 2174680
Alignment:
Q  21 gccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  2174729 gccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 2174680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 31179885 - 31179934
Alignment:
Q  22 ccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  31179885 ccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 31179934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 25921944 - 25921992
Alignment:
Q  22 ccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  25921944 ccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 25921992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 31544849 - 31544797
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    |||| ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  31544849 cagctatcgtgccacgattt-tgcagaaacctgattttaagttaactctcacaa 31544797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 34477581 - 34477633
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||||||||| |||| ||||| |||||||||||||||||||||||    
T  34477581 cagccatcgtgccacgatt-ctgcagaaacttgattttaagttaactctcacaa 34477633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 12556390 - 12556442
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    |||||||  |||||||||||||||  ||||||||||||| |||||||||||||    
T  12556390 cagccattatgccacgatttctgcagaacctgattttaaattaactctcacaa 12556442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 39797900 - 39797849
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    |||||||||||||||||||  ||| ||||||||||||||||||||||||||||    
T  39797900 cagccatcgtgccacgatta-tgcagaaacctgattttaagttaactctcaca 39797849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 2818796 - 2818847
Alignment:
Q  20 agccatcgtgccacgatttctgcgaaacctgattttaag-ttaactctcaca 70  Q
    |||||||||||||||||||||||  ||||| |||||||| ||||||||||||    
T  2818796 agccatcgtgccacgatttctgcagaacctaattttaagtttaactctcaca 2818847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 16775946 - 16775897
Alignment:
Q  21 gccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||||| ||||  | |||||||||||||||| |||||||    
T  16775946 gccatcgtgccacgattcctgcagatcctgattttaagttaattctcaca 16775897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 38960553 - 38960605
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||| |||||||||||||  ||| |||||||||||||||||||||||||||||    
T  38960553 cagccgtcgtgccacgattg-tgcagaaacctgattttaagttaactctcacaa 38960605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 10749556 - 10749505
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||| |||||||||||||  ||| ||||||||||||||||||||||||||||    
T  10749556 cagccgtcgtgccacgattg-tgcagaaacctgattttaagttaactctcaca 10749505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 10756987 - 10756959
Alignment:
Q  43 gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||||||||||||||||    
T  10756987 gaaacctgattttaagttaactctcacaa 10756959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 15355038 - 15355066
Alignment:
Q  43 gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||||||||||||||||    
T  15355038 gaaacctgattttaagttaactctcacaa 15355066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 15357314 - 15357342
Alignment:
Q  43 gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||||||||||||||||    
T  15357314 gaaacctgattttaagttaactctcacaa 15357342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 18186536 - 18186587
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    |||||||||| |||||||| |||| ||||| ||||||||||||||||||||||    
T  18186536 cagccatcgtaccacgatt-ctgcagaaacttgattttaagttaactctcaca 18186587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 23667136 - 23667108
Alignment:
Q  43 gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||||||||||||||||    
T  23667136 gaaacctgattttaagttaactctcacaa 23667108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 31542493 - 31542442
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    |||| |||||| |||||||| ||| ||||||||||||||||||||||||||||    
T  31542493 cagctatcgtgtcacgattt-tgcagaaacctgattttaagttaactctcaca 31542442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 48486164 - 48486112
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  48486164 cagccatcgtgccacgatttctgcaggacctgattttaagttaactctcacaa 48486112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 7941184 - 7941133
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  7941184 cagccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 7941133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 36920075 - 36920126
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||||||| |||  |||||||||||||||||||||||||||    
T  36920075 cagccatcgtgccacgattt-tgcagaacctgattttaagttaactctcacaa 36920126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 52942959 - 52943002
Alignment:
Q  22 ccatcgtgccacgatttctgcgaaacctgattttaagttaactc 65  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||    
T  52942959 ccatcgtgccacgatttttgcaaaacctgattttaagttaactc 52943002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 3825061 - 3825113
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||| ||||||| |||| |||||||||||||||||||||||||||||    
T  3825061 cagccatcgtgtcacgatt-ctgcagaaacctgattttaagttaactctcacaa 3825113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 16932309 - 16932361
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  16932309 cagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 16932361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 11434820 - 11434769
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    |||||||||| |||||||| |||| ||||||||||||||||||||||||||||    
T  11434820 cagccatcgtaccacgatt-ctgcagaaacctgattttaagttaactctcaca 11434769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 16934663 - 16934714
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  16934663 cagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 16934714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 5637955 - 5638006
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||| |||||||||||||| |   ||||||||||||||||||||||||||||    
T  5637955 cagcaatcgtgccacgattccgcagaaacctgattttaagttaactctcaca 5638006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 9174635 - 9174685
Alignment:
Q  20 agccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    |||| ||||||||||||| ||||  |||||||||||||||||||||||||||    
T  9174635 agccgtcgtgccacgatt-ctgcagaacctgattttaagttaactctcacaa 9174685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 36921983 - 36922033
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||||||||| ||||||||| |||  ||||||||||||||||||||||||||    
T  36921983 cagccatcgtaccacgattt-tgcagaacctgattttaagttaactctcaca 36922033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 9176990 - 9177035
Alignment:
Q  25 tcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  9176990 tcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 9177035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 22780901 - 22780953
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    |||| ||||| |||||||| |||| |||||||||||||||||||||||||||||    
T  22780901 cagctatcgtaccacgatt-ctgcagaaacctgattttaagttaactctcacaa 22780953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 22783266 - 22783317
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    |||| ||||| |||||||| |||| ||||||||||||||||||||||||||||    
T  22783266 cagctatcgtaccacgatt-ctgcagaaacctgattttaagttaactctcaca 22783317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 28992 - 28940
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  28992 cagccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 28940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 1072347 - 1072395
Alignment:
Q  22 ccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    ||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  1072347 ccatcgtaccacgatttctgcagaacctgattttaagttaactctcaca 1072395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 15541631 - 15541679
Alignment:
Q  22 ccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||||||| |||||||||||| || ||||||||||||||||||||||||    
T  15541631 ccatcgtggcacgatttctgcaaatcctgattttaagttaactctcaca 15541679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 24191620 - 24191668
Alignment:
Q  22 ccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||||||| |||||||||||  |||||||||||||||||||||||||||    
T  24191620 ccatcgtggcacgatttctgtaaaacctgattttaagttaactctcaca 24191668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 24192717 - 24192765
Alignment:
Q  22 ccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||||||| |||||||||||  |||||||||||||||||||||||||||    
T  24192717 ccatcgtggcacgatttctgtaaaacctgattttaagttaactctcaca 24192765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 15530610 - 15530661
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||||||| ||||  | ||||||||||||||||||||||||    
T  15530610 cagccatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 15530661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 33308736 - 33308684
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  33308736 cagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 33308684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 33311005 - 33310953
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  33311005 cagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 33310953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 14507665 - 14507716
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||||||||||    
T  14507665 cagccatcgtgccacgatt-ctgcagaaatctgattttaagttaactctcaca 14507716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 8995306 - 8995255
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||||||| || |  | ||||||||||||||||||||||||    
T  8995306 cagccatcgtgccacgattcctacagatcctgattttaagttaactctcaca 8995255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 9019753 - 9019702
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||||||| || |  | ||||||||||||||||||||||||    
T  9019753 cagccatcgtgccacgattcctacagatcctgattttaagttaactctcaca 9019702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 26068837 - 26068882
Alignment:
Q  25 tcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  26068837 tcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 26068882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 15533172 - 15533221
Alignment:
Q  22 ccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    |||||||| |||||||||||   | |||||||||||||||||||||||||    
T  15533172 ccatcgtggcacgatttctgtagatcctgattttaagttaactctcacaa 15533221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 71
Target Start/End: Original strand, 26066584 - 26066612
Alignment:
Q  43 gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||||||||||||||||    
T  26066584 gaaacctgattttaagttaactctcacaa 26066612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 29755228 - 29755279
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||| |||||||||||||  ||| ||||||||||||||||||||||||||||    
T  29755228 cagccgtcgtgccacgattg-tgcagaaacctgattttaagttaactctcaca 29755279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 27306717 - 27306767
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||||||||||||||||||| ||| |||||| ||||||||||||||||||||    
T  27306717 cagccatcgtgccacgattt-tgcaaaaccttattttaagttaactctcaca 27306767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 1047452 - 1047504
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||| ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  1047452 cagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 1047504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 26804396 - 26804344
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||||||||| |||  |||||||||||||||||||||||||||||    
T  26804396 cagccatcgtgccacgatt-ctgtagaaacctgattttaagttaactctcacaa 26804344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 40837213 - 40837261
Alignment:
Q  22 ccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  40837213 ccatcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 40837261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 3878373 - 3878322
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||||||| |||| |||| |||||||||||||||||||||||    
T  3878373 cagccatcgtgccacgatt-ctgcagaaatctgattttaagttaactctcaca 3878322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 18567414 - 18567363
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||| ||||||||||||||||||   ||||||||||||||| ||||||||||    
T  18567414 cagctatcgtgccacgatttctgtagaacctgattttaagtcaactctcaca 18567363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 31435535 - 31435586
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    |||| ||||||||||||||||||   ||||||||||||||| ||||||||||    
T  31435535 cagctatcgtgccacgatttctgtagaacctgattttaagtcaactctcaca 31435586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 32 - 70
Target Start/End: Complemental strand, 42006354 - 42006316
Alignment:
Q  32 acgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    ||||||||| | |||||||||||||||||||||||||||    
T  42006354 acgatttctccaaaacctgattttaagttaactctcaca 42006316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 22107894 - 22107865
Alignment:
Q  43 gaaacctgattttaagttaactctcacaag 72  Q
    ||||||||||||||||||||||||||||||    
T  22107894 gaaacctgattttaagttaactctcacaag 22107865  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 71
Target Start/End: Complemental strand, 22392340 - 22392291
Alignment:
Q  22 ccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    |||||||| |||||||||| |  ||||||||||||| |||||||||||||    
T  22392340 ccatcgtggcacgatttctccataacctgattttaaattaactctcacaa 22392291  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 40549654 - 40549625
Alignment:
Q  43 gaaacctgattttaagttaactctcacaag 72  Q
    ||||||||||||||||||||||||||||||    
T  40549654 gaaacctgattttaagttaactctcacaag 40549625  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 2935121 - 2935070
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||| |||||||||||||  ||| ||||||||||||||||||||||||||||    
T  2935121 cagccgtcgtgccacgattg-tgcagaaacctgattttaagttaactctcaca 2935070  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 9027636 - 9027687
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||| |||||||||||||  ||| ||||||||||||||||||||||||||||    
T  9027636 cagccgtcgtgccacgattg-tgcagaaacctgattttaagttaactctcaca 9027687  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 22136905 - 22136877
Alignment:
Q  43 gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||||||||||||||||    
T  22136905 gaaacctgattttaagttaactctcacaa 22136877  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 40551932 - 40551904
Alignment:
Q  43 gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||||||||||||||||    
T  40551932 gaaacctgattttaagttaactctcacaa 40551904  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 12517516 - 12517565
Alignment:
Q  21 gccatcgtgccacgatttctgcgaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||||| ||||  | ||||||||||||||||||||||||    
T  12517516 gccatcgtgccacgattcctgcagatcctgattttaagttaactctcaca 12517565  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 43079392 - 43079344
Alignment:
Q  25 tcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaagt 73  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  43079392 tcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaagt 43079344  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 15067828 - 15067776
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    |||||||| |||||||||| |||| ||| |||||||||||||||| |||||||    
T  15067828 cagccatcttgccacgattcctgcaaaatctgattttaagttaacactcacaa 15067776  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 15072557 - 15072505
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||| ||||||| ||||  || ||||||||||||||||||||||||    
T  15072557 cagccatcgtgtcacgattcctgcagaatctgattttaagttaactctcacaa 15072505  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 18810534 - 18810483
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||| ||||||||||||| |||| ||||||||||||||||||||||||||||    
T  18810534 cagccgtcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 18810483  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 18812719 - 18812667
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    ||||| |||||||||||||  |  |||||||||||||||||||||||||||||    
T  18812719 cagccgtcgtgccacgattcttcagaaacctgattttaagttaactctcacaa 18812667  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 27826833 - 27826781
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    |||| |||||||||||||| ||||  | |||||||||||||||||||||||||    
T  27826833 cagcaatcgtgccacgattcctgcagatcctgattttaagttaactctcacaa 27826781  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 27829144 - 27829092
Alignment:
Q  19 cagccatcgtgccacgatttctgcgaaacctgattttaagttaactctcacaa 71  Q
    |||| |||||||||||||| ||||  | |||||||||||||||||||||||||    
T  27829144 cagcaatcgtgccacgattcctgcagatcctgattttaagttaactctcacaa 27829092  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 71
Target Start/End: Complemental strand, 43081767 - 43081721
Alignment:
Q  25 tcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    ||||||||||||| |||| |||||||||||||||||||||||||||||    
T  43081767 tcgtgccacgatt-ctgcagaaacctgattttaagttaactctcacaa 43081721  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 28252076 - 28252122
Alignment:
Q  20 agccatcgtgccacgatttctgcgaaacctgattttaagttaactct 66  Q
    |||||||||||||||||| ||||  | ||||||||||||||||||||    
T  28252076 agccatcgtgccacgattcctgcagatcctgattttaagttaactct 28252122  T

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Target: scaffold0127 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 13007 - 13054
Alignment:
Q  23 catcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  13007 catcgtgccacgatt-ctgcagaaacctgattttaagttaactctcaca 13054  T

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Target: scaffold0131 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 14814 - 14768
Alignment:
Q  24 atcgtgccacgatttctgc-gaaacctgattttaagttaactctcac 69  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||||    
T  14814 atcgtgccacgattcctgcagaatcctgattttaagttaactctcac 14768  T

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Target: scaffold0472 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 70
Target Start/End: Complemental strand, 5978 - 5927
Alignment:
Q  19 cagccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcaca 70  Q
    ||||| |||||||||||||  ||| ||||||||||||||||||||||||||||    
T  5978 cagccgtcgtgccacgattg-tgcagaaacctgattttaagttaactctcaca 5927  T

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Target: scaffold0140 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 21942 - 21914
Alignment:
Q  43 gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||||||||||||||||    
T  21942 gaaacctgattttaagttaactctcacaa 21914  T

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Target: scaffold0140; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 71
Target Start/End: Complemental strand, 24217 - 24189
Alignment:
Q  43 gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||||||||||||||||    
T  24217 gaaacctgattttaagttaactctcacaa 24189  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 69783 - 69834
Alignment:
Q  20 agccatcgtgccacgatttctgc-gaaacctgattttaagttaactctcacaa 71  Q
    |||||||||||||||||| |||| |||| ||||||||||||||||||| ||||    
T  69783 agccatcgtgccacgatt-ctgcagaaatctgattttaagttaactcttacaa 69834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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