View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14353_high_23 (Length: 475)

Name: NF14353_high_23
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14353_high_23
NF14353_high_23
[»] chr1 (7 HSPs)
chr1 (156-465)||(48673139-48673449)
chr1 (1-155)||(48673521-48673675)
chr1 (156-223)||(16026107-16026174)
chr1 (188-223)||(18470188-18470223)
chr1 (99-157)||(47726500-47726558)
chr1 (99-157)||(47747806-47747864)
chr1 (113-157)||(620678-620722)
[»] chr7 (10 HSPs)
chr7 (82-141)||(18128434-18128493)
chr7 (82-149)||(21946402-21946469)
chr7 (179-223)||(1532196-1532240)
chr7 (154-222)||(12422048-12422116)
chr7 (80-156)||(12484018-12484094)
chr7 (80-156)||(12505448-12505524)
chr7 (82-140)||(20389764-20389822)
chr7 (80-137)||(1532317-1532374)
chr7 (82-139)||(3681252-3681309)
chr7 (82-142)||(21920965-21921025)
[»] chr6 (3 HSPs)
chr6 (82-149)||(9405260-9405327)
chr6 (187-227)||(10544282-10544322)
chr6 (82-157)||(32548136-32548211)
[»] chr4 (9 HSPs)
chr4 (187-241)||(53769886-53769940)
chr4 (156-225)||(33617867-33617936)
chr4 (200-240)||(22889568-22889608)
chr4 (200-240)||(22941232-22941272)
chr4 (156-223)||(48194417-48194484)
chr4 (187-225)||(31095103-31095141)
chr4 (80-157)||(3101645-3101722)
chr4 (80-137)||(48194307-48194364)
chr4 (82-142)||(23183820-23183880)
[»] chr3 (6 HSPs)
chr3 (80-137)||(51265807-51265864)
chr3 (188-223)||(51265950-51265985)
chr3 (187-241)||(9343215-9343269)
chr3 (81-138)||(21267175-21267232)
chr3 (197-242)||(38457015-38457060)
chr3 (113-157)||(9343045-9343089)
[»] chr5 (2 HSPs)
chr5 (97-157)||(10532136-10532196)
chr5 (91-157)||(10532265-10532331)
[»] chr2 (1 HSPs)
chr2 (249-292)||(691066-691109)
[»] scaffold0384 (1 HSPs)
scaffold0384 (91-156)||(7413-7478)
[»] chr8 (3 HSPs)
chr8 (161-222)||(37064522-37064583)
chr8 (82-142)||(27533113-27533172)
chr8 (82-142)||(32566756-32566815)
[»] scaffold0591 (1 HSPs)
scaffold0591 (178-222)||(3938-3982)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 156 - 465
Target Start/End: Complemental strand, 48673449 - 48673139
Alignment:
Q  156 acttaaaggacataactgatatgaaaataatttaaatgatcaacttattataattaaataacttaaa-ggatcactaatgtaatttaaactatattttat 254  Q
    ||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  48673449 acttaaaggacgtaactgatatgaaaataatttaaatgaccaacttgttataattaaataacttaaaaggatcactaatgtaatttaaactatattttat 48673350  T
Q  255 attaccagctttccattatagcaaagttttcttaattatcgaactttcgcattagtatttctgactttctgtttgagatcattttatattttttaaggtt 354  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48673349 attaccaactttccattatagcagagttttcttaattaccgaacttttgtattagtatttctgactttctgtttgagatcattttatattttttaaggtt 48673250  T
Q  355 tcagatatagggtcaccggcatgaatgaggcgttcatcctcatctaatcaagatcctcgtggacatggagctagtaatatgatactataatcggtgtctc 454  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48673249 tcagatatagggtcaccggcaggaatgaggcgttcatcctcatctaatcaagatcctcatggacatggagctagtaatatgatactataatcggtgtctc 48673150  T
Q  455 aattacctatg 465  Q
    |||||||||||    
T  48673149 aattacctatg 48673139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 48673675 - 48673521
Alignment:
Q  1 gtaccgcttaggtcctttacgagtttatgttatttaattcttacaaattagtctttgnnnnnnncgtaccacttaggcccttttaagttgtttaactata 100  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       | ||||||||||||||||||||||||||||||||||    
T  48673675 gtaccacttaggtcctttacgagtttatgttatttaattcttacaaattagtctttgttttttccataccacttaggcccttttaagttgtttaactata 48673576  T
Q  101 acaatttgggaaatttcaaatcttaaaaatttaagttattcggcatttaaaagtt 155  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  48673575 acaatttgggaaatttcaaatcttaaaaatttaagttattcagcatttaaaagtt 48673521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 223
Target Start/End: Complemental strand, 16026174 - 16026107
Alignment:
Q  156 acttaaaggacataactgatatgaaaataatttaaatgatcaacttattataattaaataacttaaag 223  Q
    ||||||||||| |||  | || ||||| ||| |||||||| ||||||||| |||||||||||||||||    
T  16026174 acttaaaggacctaagaggtacgaaaaaaatgtaaatgattaacttattacaattaaataacttaaag 16026107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 223
Target Start/End: Complemental strand, 18470223 - 18470188
Alignment:
Q  188 taaatgatcaacttattataattaaataacttaaag 223  Q
    |||||||||||||||||| |||||||||||||||||    
T  18470223 taaatgatcaacttattacaattaaataacttaaag 18470188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 47726558 - 47726500
Alignment:
Q  99 taacaatttgggaaatttcaaatcttaaaaatttaagttattcggcatttaaaagttac 157  Q
    |||||||||| | ||||||| |||||||||||  ||||||||||| || ||||||||||    
T  47726558 taacaatttgaggaatttcatatcttaaaaatgcaagttattcgggatctaaaagttac 47726500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 47747864 - 47747806
Alignment:
Q  99 taacaatttgggaaatttcaaatcttaaaaatttaagttattcggcatttaaaagttac 157  Q
    |||||||||| | ||||||| |||||||||||  ||||||||||| || ||||||||||    
T  47747864 taacaatttgaggaatttcatatcttaaaaatgcaagttattcgggatctaaaagttac 47747806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 620678 - 620722
Alignment:
Q  113 atttcaaatcttaaaaatttaagttattcggcatttaaaagttac 157  Q
    |||| ||||||||||||| ||||||||||||  ||||||||||||    
T  620678 atttaaaatcttaaaaatgtaagttattcggtgtttaaaagttac 620722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 18128493 - 18128434
Alignment:
Q  82 tttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagttattc 141  Q
    |||||||| |||||| ||||||||||||  ||||||| ||||||||||| ||||||||||    
T  18128493 tttaagttatttaaccataacaatttggcgaatttcagatcttaaaaatgtaagttattc 18128434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 21946469 - 21946402
Alignment:
Q  82 tttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagttattcggcattta 149  Q
    |||||||| ||||||| ||||||||||   ||||||||||||||||||| ||||||| ||| ||||||    
T  21946469 tttaagttatttaactttaacaatttgaagaatttcaaatcttaaaaatgtaagttactcgacattta 21946402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 1532240 - 1532196
Alignment:
Q  179 aaaataatttaaatgatcaacttattataattaaataacttaaag 223  Q
    |||| ||| |||||||||||||||||| |||||||||||||||||    
T  1532240 aaaaaaatgtaaatgatcaacttattacaattaaataacttaaag 1532196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 222
Target Start/End: Complemental strand, 12422116 - 12422048
Alignment:
Q  154 ttacttaaaggacataactgatatgaaaataatttaaatgatcaacttattataattaaataacttaaa 222  Q
    ||||||||||||| ||| || |||||||| || |||||||| ||| |||||| |||| |||||||||||    
T  12422116 ttacttaaaggacctaagtggtatgaaaaaaacttaaatgaccaatttattacaatttaataacttaaa 12422048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 12484018 - 12484094
Alignment:
Q  80 cttttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagttattcggcatttaaaagtta 156  Q
    ||||||| || ||||||| ||| ||| | ||| |||||| ||||||||||| ||||| ||||||| |||||||||||    
T  12484018 cttttaaattatttaactttaataatatcggagatttcagatcttaaaaatgtaagtgattcggcgtttaaaagtta 12484094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 12505448 - 12505524
Alignment:
Q  80 cttttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagttattcggcatttaaaagtta 156  Q
    ||||||| || ||||||| ||| ||| | ||| |||||| ||||||||||| ||||| ||||||| |||||||||||    
T  12505448 cttttaaattatttaactttaataatatcggagatttcagatcttaaaaatgtaagtgattcggcgtttaaaagtta 12505524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 20389764 - 20389822
Alignment:
Q  82 tttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagttatt 140  Q
    |||||||| ||||||| |||||||||||  ||||| | ||||||||||| |||||||||    
T  20389764 tttaagttatttaactgtaacaatttggcgaattttagatcttaaaaatgtaagttatt 20389822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 1532317 - 1532374
Alignment:
Q  80 cttttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagtt 137  Q
    |||||||||| ||||||  |||||||||| || |||||| |||||| |||||||||||    
T  1532317 cttttaagttatttaaccgtaacaatttgagagatttcagatcttagaaatttaagtt 1532374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 3681252 - 3681309
Alignment:
Q  82 tttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagttat 139  Q
    |||||||| ||||||  |||||||||  |  |||||||||||||||||||||||||||    
T  3681252 tttaagttatttaaccgtaacaatttttgggatttcaaatcttaaaaatttaagttat 3681309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 21921025 - 21920965
Alignment:
Q  82 tttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagttattcg 142  Q
    |||||||| |||||| |||| |||||||| ||||| | | ||||||||| |||||||||||    
T  21921025 tttaagttatttaaccataaaaatttggggaattttagaccttaaaaatgtaagttattcg 21920965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 9405260 - 9405327
Alignment:
Q  82 tttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagttattcggcattta 149  Q
    ||||| || ||||||  |||||||||| | ||||||| ||||||||||||| ||||||||||||||||    
T  9405260 tttaatttatttaaccgtaacaatttgaggaatttcagatcttaaaaattttagttattcggcattta 9405327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 10544282 - 10544322
Alignment:
Q  187 ttaaatgatcaacttattataattaaataacttaaaggatc 227  Q
    |||||||||||||||||||||||||| |||||||| |||||    
T  10544282 ttaaatgatcaacttattataattaattaacttaatggatc 10544322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 32548136 - 32548211
Alignment:
Q  82 tttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagttattcggcatttaaaagttac 157  Q
    |||||||| ||||||  |||||||||| |  |||| ||||||||||||| |||| ||||||| || ||||||||||    
T  32548136 tttaagttatttaaccgtaacaatttgcggtattttaaatcttaaaaatgtaagctattcgggatctaaaagttac 32548211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 53769886 - 53769940
Alignment:
Q  187 ttaaatgatcaacttattataattaaataacttaaaggatcactaatgtaattta 241  Q
    ||||| |||||||||||||||||||||||| |||||||||| || || |||||||    
T  53769886 ttaaaggatcaacttattataattaaataatttaaaggatctctcatataattta 53769940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 225
Target Start/End: Original strand, 33617867 - 33617936
Alignment:
Q  156 acttaaaggacataactgatatgaaaataatttaaatgatcaacttattataattaaataacttaaagga 225  Q
    ||||||||||||||| ||||||||||| || ||||| |||  |||||||| | |||| ||||||||||||    
T  33617867 acttaaaggacataattgatatgaaaaaaacttaaaggattgacttattacacttaattaacttaaagga 33617936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 22889608 - 22889568
Alignment:
Q  200 ttattataattaaataacttaaaggatcactaatgtaattt 240  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  22889608 ttattataattaaataacttaaatgatctctaatgtaattt 22889568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 22941272 - 22941232
Alignment:
Q  200 ttattataattaaataacttaaaggatcactaatgtaattt 240  Q
    ||||||||||||||||||||||| |||| ||||||||||||    
T  22941272 ttattataattaaataacttaaatgatctctaatgtaattt 22941232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 223
Target Start/End: Original strand, 48194417 - 48194484
Alignment:
Q  156 acttaaaggacataactgatatgaaaataatttaaatgatcaacttattataattaaataacttaaag 223  Q
    ||||||||||| |||  | || ||||| ||  |||||||||||||||||| |||||||||||||||||    
T  48194417 acttaaaggacctaagaggtacgaaaaaaacgtaaatgatcaacttattacaattaaataacttaaag 48194484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 31095141 - 31095103
Alignment:
Q  187 ttaaatgatcaacttattataattaaataacttaaagga 225  Q
    ||||||||| ||||| |||||||||||||||||||||||    
T  31095141 ttaaatgattaacttgttataattaaataacttaaagga 31095103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 157
Target Start/End: Complemental strand, 3101722 - 3101645
Alignment:
Q  80 cttttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagttattcggcatttaaaagttac 157  Q
    ||||||| || | ||| |||||||||||| |||||||   ||||||||||  ||||||||| | ||||||||||||||    
T  3101722 cttttaaattatataattataacaatttgagaaattttttatcttaaaaaaataagttatttgacatttaaaagttac 3101645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 48194364 - 48194307
Alignment:
Q  80 cttttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagtt 137  Q
    |||||||||| ||||||  |||||||||| || |||||| |||||| |||||||||||    
T  48194364 cttttaagttatttaaccgtaacaatttgagagatttcagatcttagaaatttaagtt 48194307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 23183820 - 23183880
Alignment:
Q  82 tttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagttattcg 142  Q
    |||||||| |||||   |||||||||||   |||||||||||||||||| |||||||||||    
T  23183820 tttaagttatttaaaagtaacaatttggaggatttcaaatcttaaaaatataagttattcg 23183880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 80 - 137
Target Start/End: Complemental strand, 51265864 - 51265807
Alignment:
Q  80 cttttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagtt 137  Q
    |||||||||| ||||||  |||||||||| || |||||| ||||||||||||||||||    
T  51265864 cttttaagttatttaaccgtaacaatttgagagatttcagatcttaaaaatttaagtt 51265807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 51265950 - 51265985
Alignment:
Q  188 taaatgatcaacttattataattaaataacttaaag 223  Q
    |||||||||||||||||| |||||||||||||||||    
T  51265950 taaatgatcaacttattacaattaaataacttaaag 51265985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 241
Target Start/End: Original strand, 9343215 - 9343269
Alignment:
Q  187 ttaaatgatcaacttattataattaaataacttaaaggatcactaatgtaattta 241  Q
    ||||| || |||||||||||||||||||||||||||| ||| |  ||||||||||    
T  9343215 ttaaaggaccaacttattataattaaataacttaaagaatctccgatgtaattta 9343269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 21267175 - 21267232
Alignment:
Q  81 ttttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagtta 138  Q
    |||||||||  |||||  |||||||||| | ||||||||||||||||||| |||||||    
T  21267175 ttttaagttaattaaccgtaacaatttgaggaatttcaaatcttaaaaatataagtta 21267232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 38457060 - 38457015
Alignment:
Q  197 aacttattataattaaataacttaaaggatcactaatgtaatttaa 242  Q
    |||||||||||||||||||||||||| |||||| |  |||||||||    
T  38457060 aacttattataattaaataacttaaatgatcacaaccgtaatttaa 38457015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 9343045 - 9343089
Alignment:
Q  113 atttcaaatcttaaaaatttaagttattcggcatttaaaagttac 157  Q
    |||||||||||||||||||||||||||| | | | ||||||||||    
T  9343045 atttcaaatcttaaaaatttaagttattagacgtctaaaagttac 9343089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 10532136 - 10532196
Alignment:
Q  97 tataacaatttgggaaatttcaaatcttaaaaatttaagttattcggcatttaaaagttac 157  Q
    ||||||||||| |||||||| | || |||||||| ||| ||| ||||||||||||||||||    
T  10532136 tataacaatttaggaaattttagattttaaaaatgtaaattactcggcatttaaaagttac 10532196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 157
Target Start/End: Original strand, 10532265 - 10532331
Alignment:
Q  91 tttaactataacaatttgggaaatttcaaatcttaaaaatttaagttattcggcatttaaaagttac 157  Q
    ||||||||||||||||| || ||||| | || ||| |||| ||| ||| ||||||||||||||||||    
T  10532265 tttaactataacaatttagggaattttagattttacaaatgtaaattactcggcatttaaaagttac 10532331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 249 - 292
Target Start/End: Complemental strand, 691109 - 691066
Alignment:
Q  249 ttttatattaccagctttccattatagcaaagttttcttaatta 292  Q
    |||||||||| || ||||||||||||||| ||||||||||||||    
T  691109 ttttatattatcatctttccattatagcatagttttcttaatta 691066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 7478 - 7413
Alignment:
Q  91 tttaactataacaatttgggaaatttcaaatcttaaaaatttaagttattcggcatttaaaagtta 156  Q
    |||||||||||||||||  ||||||| | |||||| | || ||||||||| ||| |||||||||||    
T  7478 tttaactataacaatttatgaaatttaagatcttatatatgtaagttatttggcgtttaaaagtta 7413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 37064583 - 37064522
Alignment:
Q  161 aaggacataactgatatgaaaataatttaaatgatcaacttattataattaaataacttaaa 222  Q
    |||||||| | |||||  |||| || |||||  |||||||||||||||||||||||||||||    
T  37064583 aaggacatgagtgataccaaaaaaacttaaaacatcaacttattataattaaataacttaaa 37064522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 142
Target Start/End: Complemental strand, 27533172 - 27533113
Alignment:
Q  82 tttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagttattcg 142  Q
    |||||||| ||||||| ||| ||||||  |||||||| ||||||||||| |||||||||||    
T  27533172 tttaagttatttaactgtaataatttgt-aaatttcatatcttaaaaatgtaagttattcg 27533113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 32566756 - 32566815
Alignment:
Q  82 tttaagttgtttaactataacaatttgggaaatttcaaatcttaaaaatttaagttattcg 142  Q
    |||||||| ||||||  ||||||||| ||| |||||||||||| ||||| |||||||||||    
T  32566756 tttaagttatttaaccgtaacaatttaggagatttcaaatctt-aaaatataagttattcg 32566815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 222
Target Start/End: Original strand, 3938 - 3982
Alignment:
Q  178 gaaaataatttaaatgatcaacttattataattaaataacttaaa 222  Q
    |||||||| |||||||||||| |||||| ||||||||||| ||||    
T  3938 gaaaataacttaaatgatcaatttattacaattaaataacataaa 3982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University