View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_high_3 (Length: 767)
Name: NF14353_high_3
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 699; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 13 - 763
Target Start/End: Original strand, 37419325 - 37420075
Alignment:
| Q |
13 |
agcatagggagcctgtcatgttagaacaacgattatgaaattatccaagagatagagtaaatgaaatgaaccattagacaatttttcactagtgaaagtt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
37419325 |
agcatagggagcctgtcatgttagaacaacgattatgaaattatccaagagatagagtaaatgaaatgaaccattagacaatttatcactagtgaaagtt |
37419424 |
T |
|
| Q |
113 |
caaaacttcataatcatataatatgctaaagtattttaatcaccagagaacaattattaaaaagtctcccgagccttgtatattacttactaattacaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37419425 |
caaaacttcataatcatataatatgctaaagtattttaatcaccagagaacaattattaaaaagtctcccgagccttgtatattacttactaattacaaa |
37419524 |
T |
|
| Q |
213 |
tttagttatttactttgatacaacaatgtaaatttcttcttatcaacattaacttaaaggttgaagcaagaaaacataccggattaagatacagataaag |
312 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37419525 |
tttagttatttactttgatacaacaatgtaaatttcttcttatcaacattaacttaaaggttgaagcaagaaaacataccggattaagatacagataaag |
37419624 |
T |
|
| Q |
313 |
ccgtaaacattccacattaataatactgaaaagcttgcgaacaaaaacccccatttgttgcacactcttgacctttgaagttattagagaaatatcagcc |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37419625 |
ccgtaaacattccacattaataatactgaaaagcttgcgaacaaaaatccccatttgttgcacgctcttgacctttgaagttattagagaaatatcagcc |
37419724 |
T |
|
| Q |
413 |
ttcgcaacgtgtgcatctagtaaaatggtctctgctgacacataaccgtcataacggaatttctgaatatttgaagcatggatcttaatttcagcatgtg |
512 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37419725 |
ttcgcaacatgtgcatctagtaaaatggtctctgctgacacataaccatcataacggaatttctgaatatttgaagcatggatcttaatttcagcatgtg |
37419824 |
T |
|
| Q |
513 |
acaaatcagatcgcgaataacgattaccacggatcatagtaaccacttcaagtagaggcgcttctaaagtgacacactttacacctgaccaagtgcaagc |
612 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37419825 |
acaaatcagatcgcgaataacgattaccacgggtcatagtaaccacttcaagtagaggcgcttctaaagtgacacactttacacctgaccaagtgcaagc |
37419924 |
T |
|
| Q |
613 |
atttgtcacatactctctaagaactgggaaattaagtgttaactcttttgactcgttagaagagtaacaagtaattgtcattccagtcctgattgcaatg |
712 |
Q |
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||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37419925 |
atttgtcacatactctctaagaattgggaaattaagtcgtaactcttttgactcattagaagagtaacaagtaattgtcattccagtcctgattgcaatc |
37420024 |
T |
|
| Q |
713 |
aaatgcaagacagtgagggatgaaagacaaacaaaggatggaaattggaca |
763 |
Q |
| |
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|
| T |
37420025 |
aaatgcaagactgtgagggatgaaagacaaacaaaggatggaaatcggaca |
37420075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 140 - 318
Target Start/End: Original strand, 37427906 - 37428084
Alignment:
| Q |
140 |
aaagtattttaatcaccagagaacaattattaaaaagtctcccgagccttgtatattacttactaattacaaatttagttatttactttgatacaacaat |
239 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37427906 |
aaagtgttttaaccaccagagaacaattattaaaaagtttccctagccttgtattttacttactaattacaaatttagttatttactttgatacaacaat |
37428005 |
T |
|
| Q |
240 |
gtaaatttcttcttatcaacattaacttaaaggttgaagcaagaaaacataccggattaagatacagataaagccgtaa |
318 |
Q |
| |
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|
| T |
37428006 |
gtaaatttcttcttatcaacattaacttaaaggttgaagcaagaaaacataccggattaagatgcagataaagccgtaa |
37428084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 28 - 103
Target Start/End: Original strand, 37427826 - 37427902
Alignment:
| Q |
28 |
tcatgttagaacaacg-attatgaaattatccaagagatagagtaaatgaaatgaaccattagacaatttttcacta |
103 |
Q |
| |
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||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
37427826 |
tcatgttagaacaacatattaagaaattatccaagagattgagtaaatgaaatgaacaattagacaatttttcacta |
37427902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 553 - 697
Target Start/End: Original strand, 51944164 - 51944309
Alignment:
| Q |
553 |
aaccacttcaagtagaggcgcttctaaagtgacacactttacacctgaccaagtgcaagcatttgtcacatactctct-aagaactgggaaattaagtgt |
651 |
Q |
| |
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|||||||||||||| ||||||||| |||||||||| ||||||||| | |||||||||| | || ||||||||| ||||| |||||||||||| || |
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| T |
51944164 |
aaccacttcaagtaaaggcgcttccaaagtgacactctttacaccagtccaagtgcaatcggctgcgtaatactctcttaagaattgggaaattaagagt |
51944263 |
T |
|
| Q |
652 |
taactcttttgactcgttagaagagtaacaagtaattgtcattcca |
697 |
Q |
| |
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|||||||||||| || |||||||| |||||||||| ||| |||||| |
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|
| T |
51944264 |
taactcttttgattcattagaagactaacaagtaaatgtgattcca |
51944309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 557 - 676
Target Start/End: Original strand, 34746958 - 34747077
Alignment:
| Q |
557 |
acttcaagtagaggcgcttctaaagtgacacactttacacctgaccaagtgcaagcatttgtcacatactctctaagaactgggaaattaagtgttaact |
656 |
Q |
| |
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|||||||| ||||| ||| |||| |||||| ||| ||||||||| || ||||| || ||||||| ||| |||||||||||||||||||||||| ||| |
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| T |
34746958 |
acttcaagcagaggtacttgtaaaatgacactcttcacacctgacaaaatgcaaccaaatgtcacaaactttctaagaactgggaaattaagtgtcaacg |
34747057 |
T |
|
| Q |
657 |
cttttgactcgttagaagag |
676 |
Q |
| |
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||| || || ||||||||| |
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| T |
34747058 |
ttttggagtcattagaagag |
34747077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 553 - 695
Target Start/End: Original strand, 34742387 - 34742529
Alignment:
| Q |
553 |
aaccacttcaagtagaggcgcttctaaagtgacacactttacacctgaccaagtgcaagcatttgtcacatactctctaagaactgggaaattaagtgtt |
652 |
Q |
| |
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|||||||| |||||||||| || |||||| |||| || |||||||||||||||||| | |||| |||||| ||||| ||||||||||||||| |
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| T |
34742387 |
aaccacttaaagtagaggcactcttaaagtaacactattcacacctgaccaagtgcaatccaatgtctcatactttctaattgctgggaaattaagtgcc |
34742486 |
T |
|
| Q |
653 |
aactcttttgactcgttagaagagtaacaagtaattgtcattc |
695 |
Q |
| |
|
|| ||| |||| |||||||||| |||||||||||| |||| |
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|
| T |
34742487 |
aaagttttggacttattagaagagtcacaagtaattgtgattc |
34742529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 616 - 695
Target Start/End: Original strand, 34751627 - 34751706
Alignment:
| Q |
616 |
tgtcacatactctctaagaactgggaaattaagtgttaactcttttgactcgttagaagagtaacaagtaattgtcattc |
695 |
Q |
| |
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|||| |||||| ||||||| ||||||||||||| | ||| ||| ||||| |||||||||| |||||||||||| |||| |
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| T |
34751627 |
tgtctcatactttctaagagctgggaaattaagcgccaacgttttggactcattagaagagtcacaagtaattgtgattc |
34751706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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