View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_high_31 (Length: 413)
Name: NF14353_high_31
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 394
Target Start/End: Complemental strand, 38522646 - 38522267
Alignment:
| Q |
17 |
aatatttggcctgatattttacttttactctgtgcagtatgtgcattttctgcagaagaagtattcacttggatctttcaacttgttgggccatatagca |
116 |
Q |
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| T |
38522646 |
aatatttggcctgatattttacttttactctgtgcagtatgtgcattttctgcagaagaagtattcacttggatctttcaacttgttgggccatatagca |
38522547 |
T |
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| Q |
117 |
ccaattcaggcaacaagtttactggttgttggcccctttcttgactattggttaacaagaaaacgagttgatgcctacaactatggtttaacatccactg |
216 |
Q |
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| T |
38522546 |
ccaattcaggcaacaagtttactggttgttggcccctttcttgactattggttaacaagaaaacgagttgatgcctacaactatggtttaacatccactg |
38522447 |
T |
|
| Q |
217 |
tatgtttcact--ctctttgtttcttatatagcaaatacatctctgaaatatgtaaaactgcttatcaatgtttttctccttttgtctgcagctgttcat |
314 |
Q |
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| T |
38522446 |
tatgtttcactctctctttgtttcttatatagcaaatacatctctgaaatatgtaaaactgtttatcaatgtttttctccttttgtctgcagctgttcat |
38522347 |
T |
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| Q |
315 |
tgctctttcgtgcactatcgcggttggaacaaaccttagtcagttcatatgcattggaaggttcacagcagtatcattcc |
394 |
Q |
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| T |
38522346 |
tgctctttcgtgcactatcgcggttggaacaaaccttagtcagttcatatgcattggaaggttcacagcagtatcattcc |
38522267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 45 - 224
Target Start/End: Complemental strand, 43458293 - 43458114
Alignment:
| Q |
45 |
tctgtgcagtatgtgcattttctgcagaagaagtattcacttggatctttcaacttgttgggccatatagcaccaattcaggcaacaagtttactggttg |
144 |
Q |
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| T |
43458293 |
tctgtgcagtatgtgcattttcttcagaggaaatattctattggatcatttaacttgttgggccacactgcaccagcacaggcagcaagtttactgctag |
43458194 |
T |
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| Q |
145 |
ttggcccctttcttgactattggttaacaagaaaacgagttgatgcctacaactatggtttaacatccactgtatgtttc |
224 |
Q |
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| T |
43458193 |
taggcccctttatggactattggctgacaaacaaacgagttgatgcatatgactatggcttgacatccactgtaagtttc |
43458114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 298 - 394
Target Start/End: Complemental strand, 43456529 - 43456433
Alignment:
| Q |
298 |
tgtctgcagctgttcattgctctttcgtgcactatcgcggttggaacaaaccttagtcagttcatatgcattggaaggttcacagcagtatcattcc |
394 |
Q |
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| T |
43456529 |
tgtctgcagttgttcatcattctgtcttgcactatcgcagtaggaacaaatctcagccagttcatctgcattggtaggtttacggccgtatcattcc |
43456433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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