View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14353_high_32 (Length: 401)

Name: NF14353_high_32
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14353_high_32
NF14353_high_32
[»] chr2 (4 HSPs)
chr2 (18-390)||(13617978-13618350)
chr2 (280-331)||(30905411-30905462)
chr2 (278-328)||(13835903-13835953)
chr2 (268-329)||(1870489-1870550)
[»] chr7 (4 HSPs)
chr7 (268-330)||(8656352-8656414)
chr7 (268-330)||(39786446-39786508)
chr7 (268-329)||(27915189-27915250)
chr7 (274-314)||(40721450-40721490)
[»] chr8 (3 HSPs)
chr8 (268-329)||(40607355-40607416)
chr8 (278-329)||(4989762-4989813)
chr8 (278-330)||(34085200-34085252)
[»] chr4 (7 HSPs)
chr4 (268-329)||(16831096-16831157)
chr4 (268-332)||(53142838-53142902)
chr4 (268-332)||(21762116-21762178)
chr4 (268-328)||(4860174-4860234)
chr4 (278-330)||(28299284-28299336)
chr4 (278-330)||(34458794-34458846)
chr4 (268-328)||(45921335-45921395)
[»] chr1 (5 HSPs)
chr1 (268-329)||(35876806-35876867)
chr1 (268-329)||(31160783-31160844)
chr1 (276-329)||(34382628-34382681)
chr1 (278-330)||(48375308-48375360)
chr1 (268-329)||(11065862-11065923)
[»] chr6 (2 HSPs)
chr6 (278-330)||(32800272-32800324)
chr6 (278-329)||(28048736-28048787)
[»] chr3 (2 HSPs)
chr3 (268-330)||(34228252-34228314)
chr3 (278-330)||(41287877-41287929)
[»] chr5 (3 HSPs)
chr5 (278-329)||(3600177-3600228)
chr5 (279-330)||(14152466-14152517)
chr5 (268-329)||(6102885-6102946)
[»] scaffold0299 (1 HSPs)
scaffold0299 (268-326)||(18014-18072)


Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 13617978 - 13618350
Alignment:
Q  18 gttatgtggttattgatgaactaaactttaaatcgtttatctttgactatgactcttagctaatagttatcatttacactgattatgttgtggtgattgt 117  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13617978 gttatgtggttattgatgaactaaactttaaatagtttatctttgactatgactcttagctaatagttatcatttacactgattatgttgtggtgattgt 13618077  T
Q  118 attcaagttaatctgtggccataattgtttaaaccgagaatcattttatgaagtgagtttta----aaataaataaataaagaagaatgctaaatattgc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||| |||||| |||    
T  13618078 attcaagttaatctgtggccataattgtttaaaccgagaatcattttatgaagtgagttttaaaataaataaataaataaagaagaatgttaaatagtgc 13618177  T
Q  214 ttttagggtttagttaaaacaaataacnnnnnnnnnataaaaagtggtgtaattatcaagagttaaaacttatatttttaagacaacttttatatttata 313  Q
    |||||||||||||||||||||||||||         ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  13618178 ttttagggtttagttaaaacaaataac----tttttataaaaagtggtgtaattatcaagagtcaaaacttatatttttaagacaatttttatatttata 13618273  T
Q  314 attttcttaaccattgttcgaaggtcaggacacttgttaacaagattcgtaaataaaacataatcaatattaatatt 390  Q
    |||||||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  13618274 attttcttaaccattgtttggaggtcaggacacttgttaacaagactcgtaaataaaacataatcaatattaatatt 13618350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 30905411 - 30905462
Alignment:
Q  280 aacttatatttttaagacaacttttatatttataattttcttaaccattgtt 331  Q
    ||||||||||||||||||||  ||  |||||||||||| |||||||||||||    
T  30905411 aacttatatttttaagacaaagttgctatttataatttccttaaccattgtt 30905462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 328
Target Start/End: Original strand, 13835903 - 13835953
Alignment:
Q  278 aaaacttatatttttaagacaacttttatatttataattttcttaaccatt 328  Q
    |||||||||||||| ||||||  |||| |||||||| ||||||||||||||    
T  13835903 aaaacttatattttcaagacagattttctatttatagttttcttaaccatt 13835953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 1870550 - 1870489
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaaccattg 329  Q
    ||||| ||| ||| |||||||||| ||||||| |||| |||||||| ||| |||||||||||    
T  1870550 atcaaaagtcaaagcttatattttcaagacaaattttctatttatagtttccttaaccattg 1870489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 330
Target Start/End: Original strand, 8656352 - 8656414
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaaccattgt 330  Q
    ||||| ||||||||||||| |||||||||||| |||| |||||||| ||| ||||||||||||    
T  8656352 atcaaaagttaaaacttatttttttaagacaaattttctatttatagtttccttaaccattgt 8656414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 330
Target Start/End: Complemental strand, 39786508 - 39786446
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaaccattgt 330  Q
    ||||| |||||||||||||||||| ||||||| |||| ||||||||  || ||||||||||||    
T  39786508 atcaaaagttaaaacttatattttcaagacaagttttctatttatagattccttaaccattgt 39786446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 27915250 - 27915189
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaaccattg 329  Q
    ||||| ||| ||||||||||||||||| |||| |||| ||| |||||||| ||||| |||||    
T  27915250 atcaaaagtcaaaacttatatttttaacacaaattttctatatataatttccttaatcattg 27915189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 274 - 314
Target Start/End: Original strand, 40721450 - 40721490
Alignment:
Q  274 agttaaaacttatatttttaagacaacttttatatttataa 314  Q
    |||||||||||||||||||| ||||| |||| |||||||||    
T  40721450 agttaaaacttatatttttatgacaaattttctatttataa 40721490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 40607355 - 40607416
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaaccattg 329  Q
    ||||| ||| ||||||||||||||||||| || |||| ||||||||| ||||||||||||||    
T  40607355 atcaaaagtcaaaacttatatttttaagataaattttctatttataaatttcttaaccattg 40607416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 4989762 - 4989813
Alignment:
Q  278 aaaacttatatttttaagacaacttttatatttataattttcttaaccattg 329  Q
    |||||||||||||| ||||||| |||| |||||||| |||||||||||||||    
T  4989762 aaaacttatattttcaagacaaattttttatttatagttttcttaaccattg 4989813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 34085252 - 34085200
Alignment:
Q  278 aaaacttatatttttaagacaacttttatatttataattttcttaaccattgt 330  Q
    |||||||||||||| || |||| |||| ||||||| | |||||||||||||||    
T  34085252 aaaacttatattttcaaaacaaattttttatttatgaatttcttaaccattgt 34085200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 16831157 - 16831096
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaaccattg 329  Q
    ||||| ||| |||| |||||||||||| |||| ||||||||||||| |||||||||||||||    
T  16831157 atcaaaagtcaaaatttatatttttaaaacaaattttatatttatagttttcttaaccattg 16831096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 53142838 - 53142902
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaaccattgttc 332  Q
    ||||| |||||||||||||||||| | ||||| |||| ||||||||  || ||||||||||||||    
T  53142838 atcaaaagttaaaacttatattttcatgacaaattttttatttatagcttccttaaccattgttc 53142902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 21762116 - 21762178
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaaccattgttc 332  Q
    ||||| |||||||| ||||||||  ||||||| |||| ||||||||||||  |||||||||||||    
T  21762116 atcaaaagttaaaatttatattt--aagacaaattttttatttataatttctttaaccattgttc 21762178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 328
Target Start/End: Original strand, 4860174 - 4860234
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaaccatt 328  Q
    ||||| ||| |||||||||||||| || |||| |||| ||||| |||||| ||||||||||    
T  4860174 atcaaaagtcaaaacttatattttcaaaacaaattttctatttgtaatttccttaaccatt 4860234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 28299336 - 28299284
Alignment:
Q  278 aaaacttatatttttaagacaacttttatatttataattttcttaaccattgt 330  Q
    |||||||||||||| || | || |||| |||||||||||| ||||||||||||    
T  28299336 aaaacttatattttcaatataaattttctatttataatttccttaaccattgt 28299284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 34458846 - 34458794
Alignment:
Q  278 aaaacttatatttttaagacaacttttatatttataattttcttaaccattgt 330  Q
    |||||||||||||| ||||||| ||||  ||||||  ||||||||||||||||    
T  34458846 aaaacttatattttcaagacaaatttttcatttatggttttcttaaccattgt 34458794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 45921395 - 45921335
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaaccatt 328  Q
    ||||| ||| |||||||||||||| ||||||| |||| ||||||||  || ||||||||||    
T  45921395 atcaatagtcaaaacttatattttcaagacaaattttctatttatagattccttaaccatt 45921335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 35876806 - 35876867
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaaccattg 329  Q
    ||||| |||||||||||||||||||||||||| |||| ||||| ||||||| |||| |||||    
T  35876806 atcaaaagttaaaacttatatttttaagacaaattttttatttctaatttttttaatcattg 35876867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 31160783 - 31160844
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaaccattg 329  Q
    ||||| ||| |||| ||||||||||||||||| |||| |||||||| ||| |||||||||||    
T  31160783 atcaaaagtcaaaatttatatttttaagacaaattttctatttatattttccttaaccattg 31160844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 34382681 - 34382628
Alignment:
Q  276 ttaaaacttatatttttaagacaacttttatatttataattttcttaaccattg 329  Q
    ||||||||||||||||||||| || |||| |||||||| ||||||||| |||||    
T  34382681 ttaaaacttatatttttaagataaattttttatttatagttttcttaatcattg 34382628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 48375308 - 48375360
Alignment:
Q  278 aaaacttatatttttaagacaacttttatatttataattttcttaaccattgt 330  Q
    ||||||||||||||  |||||| ||||||||||||| |||||||||| |||||    
T  48375308 aaaacttatattttctagacaatttttatatttatagttttcttaactattgt 48375360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 329
Target Start/End: Complemental strand, 11065923 - 11065862
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaaccattg 329  Q
    ||||| ||| |||||||||||||| |||| || ||||||| ||||| ||| |||||||||||    
T  11065923 atcaaaagtcaaaacttatattttcaagagaaattttataattatagtttccttaaccattg 11065862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 32800272 - 32800324
Alignment:
Q  278 aaaacttatatttttaagacaacttttatatttataattttcttaaccattgt 330  Q
    |||||||||||||||||||||| |||| |||||||| ||| ||||||||||||    
T  32800272 aaaacttatatttttaagacaaattttctatttatagtttccttaaccattgt 32800324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 329
Target Start/End: Complemental strand, 28048787 - 28048736
Alignment:
Q  278 aaaacttatatttttaagacaacttttatatttataattttcttaaccattg 329  Q
    ||||||||||||||||| |||| |||| |||||||||||| |||||| ||||    
T  28048787 aaaacttatatttttaaaacaaattttctatttataatttccttaactattg 28048736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 330
Target Start/End: Complemental strand, 34228314 - 34228252
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaaccattgt 330  Q
    ||||| ||| |||| ||||||||||||||||| |||| |||||||| ||| ||||||||||||    
T  34228314 atcaaaagtcaaaatttatatttttaagacaaattttttatttatagtttccttaaccattgt 34228252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 278 - 330
Target Start/End: Complemental strand, 41287929 - 41287877
Alignment:
Q  278 aaaacttatatttttaagacaacttttatatttataattttcttaaccattgt 330  Q
    ||||||||||||||||| |||| |||| |||||||| ||| ||||| ||||||    
T  41287929 aaaacttatatttttaaaacaaattttctatttatagtttccttaatcattgt 41287877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 278 - 329
Target Start/End: Original strand, 3600177 - 3600228
Alignment:
Q  278 aaaacttatatttttaagacaacttttatatttataattttcttaaccattg 329  Q
    |||||||||||||| ||||||| | || |||||||| |||||||||||||||    
T  3600177 aaaacttatattttcaagacaaatattttatttatagttttcttaaccattg 3600228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 330
Target Start/End: Complemental strand, 14152517 - 14152466
Alignment:
Q  279 aaacttatatttttaagacaacttttatatttataattttcttaaccattgt 330  Q
    |||||| || |||||||| || |||| |||||||||||||||||||||||||    
T  14152517 aaacttttaattttaagataaattttctatttataattttcttaaccattgt 14152466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 6102885 - 6102946
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaaccattg 329  Q
    ||||| ||| |||||||||||||| ||||||| |||| ||||||||  || |||||||||||    
T  6102885 atcaaaagtcaaaacttatattttgaagacaaattttctatttatagattccttaaccattg 6102946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 18072 - 18014
Alignment:
Q  268 atcaagagttaaaacttatatttttaagacaacttttatatttataattttcttaacca 326  Q
    ||||| ||| ||||||||||||||||||| || |||| |||||||| ||| ||||||||    
T  18072 atcaaaagtcaaaacttatatttttaagataaattttctatttatagtttccttaacca 18014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University