View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14353_high_39 (Length: 365)
Name: NF14353_high_39
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_high_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 105 - 283
Target Start/End: Complemental strand, 4119818 - 4119639
Alignment:
| Q |
105 |
cagttaacatatctcagact-caaggaaactgaattctctgaccaccgtatcggaatcttctaaaatgtcacgacagagttgtcatgaatcgtcaaacgc |
203 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
4119818 |
cagttgacatatctcaggcttcaaggaaactgaattccctgaccactgtatcagaatcttctaaaatgtcacgacagagttgtcatgaatcgtcaaatgc |
4119719 |
T |
|
| Q |
204 |
cttttcctcgttcgcctgtgatgtttcatatatatctcttgataagaattaattcaataaaaaa--tatatgaagttttatt |
283 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
4119718 |
cttttcctcgttcgcctgtgatgtttcat--atatctcttgataagaactaattcaataaaaaatgtatatgaagttttatt |
4119639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 282 - 350
Target Start/End: Complemental strand, 4119408 - 4119340
Alignment:
| Q |
282 |
ttctagactatgatgatcagtatgttcccaattcatcatatctcatgaaacgtcaccacaaagttcatc |
350 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4119408 |
ttctagactatgatgatcagcatgttcccaattcatcatatctcctgaaacgtcaccacaaagttcatc |
4119340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University