View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_high_40 (Length: 358)
Name: NF14353_high_40
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_high_40 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 14 - 358
Target Start/End: Original strand, 27001351 - 27001688
Alignment:
| Q |
14 |
atatcaaaaagaacaatcaacttagctagttgagcgctgactgtgggagttattggtgcatggaatgatataacaaggacaagcagcttagtttgcgttt |
113 |
Q |
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| T |
27001351 |
atatcaaaaagaacaatcaacttagctagttgagcgctgactgtgggagttattggtgcatggaatgataaaacaaggataagcagctcagtttgcgttt |
27001450 |
T |
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| Q |
114 |
tcaattagcgactctttctgcaaagatcaagcatcaaacttgacactatttcaatcaataataaaaaaggactgtgtttttcaaacattaatttgtcgat |
213 |
Q |
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| T |
27001451 |
t----tagcgactctttctgcaaagatcaagcgtcaaacttgacactatttcaatcaata---aaaaaggactgtgtttttcaaacattaatttgccaat |
27001543 |
T |
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| Q |
214 |
caaatggatagcagtatttttacattggcaatgtgcagtgccacgtttatttatatgttatttagggttcattatttattttcacaacattacactgttt |
313 |
Q |
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| T |
27001544 |
caaatggatagcagtatttttacattggcaatgtgcagtgccacctttatttatatgttctttagggttcattatatattttcaaaacatgacactgttt |
27001643 |
T |
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| Q |
314 |
catgtaataattctttttattttataaaatttgttttctttaata |
358 |
Q |
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| T |
27001644 |
catgtaataattctttttattttataaaatttgttttctttaata |
27001688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 320 - 358
Target Start/End: Original strand, 26679110 - 26679148
Alignment:
| Q |
320 |
ataattctttttattttataaaatttgttttctttaata |
358 |
Q |
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| T |
26679110 |
ataattctttttattttataaaatttgttttctttaata |
26679148 |
T |
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