View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14353_high_49 (Length: 314)
Name: NF14353_high_49
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_high_49 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 2 - 310
Target Start/End: Original strand, 37184915 - 37185224
Alignment:
| Q |
2 |
cgagtcatctgatacaaactggttccacatggcacttaccaagtctggtttttaaaacaccgactataagctagtgttttataatttatctcacagatac |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
37184915 |
cgagtcatctgatacaaactggttccacatggcacttaccaagtccggtttttaaaacaccgactataagctagtgttttataatttaccacacagatac |
37185014 |
T |
|
| Q |
102 |
tagtataataaatggtttggattccggtcgtttaacttcttcaactcctttaatccttagttcgtgttctaattttctggccattttttccccttattag |
201 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37185015 |
tagtataatagatggtttggattccggtcgtttaacttcttcaactcctttaatccttagttcgtgttctaattttctggccattttttccccttattag |
37185114 |
T |
|
| Q |
202 |
ttgctctagggggaggatcttaaatgagaatgtctctcttgattagttgagacttgagaa-ttacaggtattatcattcccaagttgtaacatacaaaag |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| | |||||||||||||| |
|
|
| T |
37185115 |
ttgctctagggggaggatcttaaatgagaatctctctcttgattagttgagacttgagaagttacagggattatcattcccaaatcgtaacatacaaaag |
37185214 |
T |
|
| Q |
301 |
catcagtatt |
310 |
Q |
| |
|
|||||||||| |
|
|
| T |
37185215 |
catcagtatt |
37185224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University