View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_high_5 (Length: 684)
Name: NF14353_high_5
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_high_5 |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 16 - 677
Target Start/End: Complemental strand, 8059276 - 8058615
Alignment:
| Q |
16 |
catatatgagggataattgcaaccataggaatccaggatatgactgtcatgagacaaagttgattcaagatatgtcttattcacaggcttgtaaagagaa |
115 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8059276 |
catataggaggaataattgcaaccataggaatccaggatatgactgtcatgagacaatgttgattcaagatatgtcttattcacaggcttgtaaagagaa |
8059177 |
T |
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| Q |
116 |
gaaaatgaaatatcaaattcacttcaatttctcttagacagatgcattgtatagaagagtaggaccatctcaattctcatcactcaannnnnnnnattaa |
215 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8059176 |
gaaaatgaaatatcaaattcacttcaatgtctcttagacagatgcattgtatagaagagtaggaccatctcaattctcatcactcaattttttttattaa |
8059077 |
T |
|
| Q |
216 |
ttatgacagtatcatgtcagatacgttagtagaatgaaaaacaaaattggttagcatggaatttctaataaaagattattgtctccatatcttttgaaac |
315 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8059076 |
ttatgacagtatcatgtcagatacattagtagaatgaaaaacaaaattggtcagcatggaatttctaataaaagattattgtctccatatcttttgaaac |
8058977 |
T |
|
| Q |
316 |
attgagagtacatctcacatgtgatttggcagattaaattaaactatagttgcatctcacagtcacaaattactcaaaagtaagaaacaaaatccaagac |
415 |
Q |
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| T |
8058976 |
attgagagtacatctcacatgtgatttggcagattaaattaaactatagttgcatctcacagtcacaaattactcaaaagtaagaaacaaaatccaagac |
8058877 |
T |
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| Q |
416 |
ttctaaacaacaaattgaaattcttcacaatgtaattagaaagagtaatgtaggaaaaaataaaataaaggggttcttaatcgattgatcgaacttcggt |
515 |
Q |
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| T |
8058876 |
ttctaaacaacaaattgaaattcttcacaatgtaattagaaagagtaatgtaggaaaaaataaaataaaggggttcttaatcgattgatcgaacttcggt |
8058777 |
T |
|
| Q |
516 |
gttagctgacattttctctaaatctaacggtctctacaactacaacatcgtgcatcaactcgagcggatccaaattcttcttattggtaatttgtgtcag |
615 |
Q |
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| T |
8058776 |
gttagctgacattttctctaaatctaacggtctctacaactacaacatcgtgcatcaactcgagcggatccaaattcttcttattggtaatttgtgtcag |
8058677 |
T |
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| Q |
616 |
gaagctaagggaagtacctgtgatgtgcttgaatggtactgttgtagatgacattgatgatg |
677 |
Q |
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| T |
8058676 |
gaagctaagggaagtacctgtgatgtgcttgaatggtactgttgtagatgacattgatgatg |
8058615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 68 - 260
Target Start/End: Original strand, 10428722 - 10428908
Alignment:
| Q |
68 |
gacaaagttgattcaagatatgtcttattcacaggcttgtaaagagaagaaaatgaaatatcaaattcacttcaatttctcttagacagatgcattgtat |
167 |
Q |
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| T |
10428722 |
gacaacgttgattcaagatatgtctcatttatcgtcttgtaaagagaagaaaatgaaatatcaaattcacttcaatgtcctttagaca---------tat |
10428812 |
T |
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| Q |
168 |
agaagagtaggaccatctcaattctcatcactcaa---nnnnnnnnattaattatgacagtatcatgtcagatacgttagtagaatgaaaaacaaa |
260 |
Q |
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| T |
10428813 |
gaaagagtatgagcatctcaattctcatcactcaatttttttttttattaattacgacagtgtcatgtcggatacattagtaaaatgaaaaacaaa |
10428908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 34767 - 34847
Alignment:
| Q |
63 |
catgagacaaagttgattcaagatatgtcttattcacaggcttgtaaagagaagaaaatgaaatatcaaattcacttcaat |
143 |
Q |
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| T |
34767 |
catgggacaacgttgattcaagatatgtctcatttatcgtcttgtaaagagaagaaaatgaaatatcaaattcacttcaat |
34847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 530 - 563
Target Start/End: Original strand, 6188447 - 6188480
Alignment:
| Q |
530 |
tctctaaatctaacggtctctacaactacaacat |
563 |
Q |
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| T |
6188447 |
tctctaaatttaacggtctctacaactacaacat |
6188480 |
T |
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