View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_high_6 (Length: 665)
Name: NF14353_high_6
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 19796435 - 19796762
Alignment:
| Q |
18 |
ggtagctagggttttagggtgattttcatgaaaccatagagcagcggcgtagaagccttctttgtcggac----------cgcgaacaccacggaggtta |
107 |
Q |
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| T |
19796435 |
ggtagctagggttttagggtgattttcatgaaaccagagagcggcggcgtagaagccttctttgttggactttccggtaccgcggacgccacggaggtta |
19796534 |
T |
|
| Q |
108 |
cagacgagtttgagagtggtgagtgggttgtgtgaccaagctagtttgagcctctcaacgagtgcttcagagggagtatcgggaacaacgtggaagaaga |
207 |
Q |
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| T |
19796535 |
cagacgagtttgagggcggtgagagggttttgggaccaagcaagtttgagtctctcaacgagtgtttcagaaggagtatcaggaacaacatggaagaaga |
19796634 |
T |
|
| Q |
208 |
aatcgaggcaagggttaccggtgtagagaaatgttggtgacatgttttcggtaaaccccattggtgggtttcggttagttgcaagagaattgaagttggc |
307 |
Q |
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| T |
19796635 |
aatcgaggcaagggttaccggtggagagaaacgttggtgacatgttctctgtcaaccccatcggtgggtttcggtttctaccaagagaattgaagttggc |
19796734 |
T |
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| Q |
308 |
gaccatttgatcgacgaagacatcgtta |
335 |
Q |
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| T |
19796735 |
gaccatttgatcgaggaagacatcgtta |
19796762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 546 - 621
Target Start/End: Complemental strand, 19785129 - 19785057
Alignment:
| Q |
546 |
tgcgtgggatccaagttgtttaactacgcaaatcggggtactggttaagttaaaatattgttccttgtttggcttt |
621 |
Q |
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| T |
19785129 |
tgcgtgggatccaagttgtttaactacgcaaatct---tactcgttaagttaaaatattgttccttgtttggcttt |
19785057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 374 - 434
Target Start/End: Original strand, 19796819 - 19796879
Alignment:
| Q |
374 |
agggttaggatttgacttgagagtatagatctcaggtgggccaacgagagtgacggcggcc |
434 |
Q |
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| T |
19796819 |
agggttagggtttgatttgagtgaatagatctcaggtgggccaacgagagcgacggcggcc |
19796879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 173; Significance: 1e-92; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 15835673 - 15836000
Alignment:
| Q |
18 |
ggtagctagggttttagggtgattttcatgaaaccatagagcagcggcgtagaagccttctttgtcggac----------cgcgaacaccacggaggtta |
107 |
Q |
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| T |
15835673 |
ggtagctagggttttagggtgattttcatgcaaccagagagcagcagcgtagaagccttctttattggacttgccggtaccacgaacaccacggaggtta |
15835772 |
T |
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| Q |
108 |
cagacgagtttgagagtggtgagtgggttgtgtgaccaagctagtttgagcctctcaacgagtgcttcagagggagtatcgggaacaacgtggaagaaga |
207 |
Q |
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| T |
15835773 |
cagacgagtttgagggtggtgagtgggttatgggaccatgctagtttgagtctctcgacaagtgtttcagagggagtatcggggacaacatggaagaaga |
15835872 |
T |
|
| Q |
208 |
aatcgaggcaagggttaccggtgtagagaaatgttggtgacatgttttcggtaaaccccattggtgggtttcggttagttgcaagagaattgaagttggc |
307 |
Q |
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| T |
15835873 |
aatcaaggcatgggttaccggtggagagaaatgtcggtgacatgttctcggtgaaccccatcagtgggtttcggttacttgccagagaattgaagttgtc |
15835972 |
T |
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| Q |
308 |
gaccatttgatcgacgaagacatcgtta |
335 |
Q |
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| T |
15835973 |
caccatttgatcgacaaagacattgtta |
15836000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 374 - 432
Target Start/End: Original strand, 15836042 - 15836100
Alignment:
| Q |
374 |
agggttaggatttgacttgagagtatagatctcaggtgggccaacgagagtgacggcgg |
432 |
Q |
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| T |
15836042 |
agggttggggtttgatttgagagtatagatctcaggtgggccaaggagagtgacggcgg |
15836100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 86 - 136
Target Start/End: Original strand, 47713565 - 47713615
Alignment:
| Q |
86 |
accgcgaacaccacggaggttacagacgagtttgagagtggtgagtgggtt |
136 |
Q |
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| T |
47713565 |
accgcgaacgccgcggaggttacagacgagtttaagggtggtgagtgggtt |
47713615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 47713490 - 47713546
Alignment:
| Q |
21 |
agctagggttttagggtgattttcatgaaaccatagagcagcggcgtagaagccttc |
77 |
Q |
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| T |
47713490 |
agctagggttttagggtggtagtggtgaaaccaaagagcagcggcgtagaaaccttc |
47713546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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