View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_high_69 (Length: 251)
Name: NF14353_high_69
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_high_69 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 14110483 - 14110634
Alignment:
| Q |
18 |
gtatgacctacaacctccatgactcaatgggatatagttgatttaggcgatagaggtagttttcttgcttaatacctgcaatgcaaagaagctagaaaag |
117 |
Q |
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| T |
14110483 |
gtatgagctacaacctccatgactcaatgggatatagttagtttaggcgatagaggtagttttcttgcttaatacctgcaatgtaaagaggctagataag |
14110582 |
T |
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| Q |
118 |
gaacttaaatgagtagtaacaacagtaaatttataaaggattttgatattag |
169 |
Q |
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| T |
14110583 |
gaacttaaatgagtagcaacaacagtgaagttataaaggactttgatattag |
14110634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 228
Target Start/End: Complemental strand, 41710264 - 41710234
Alignment:
| Q |
198 |
ttttgttggctttatttgtccaaggtatttt |
228 |
Q |
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| T |
41710264 |
ttttgttggctttatttgtccaaggtatttt |
41710234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 196
Target Start/End: Complemental strand, 41710396 - 41710367
Alignment:
| Q |
167 |
tagtttcaaatctgtctccttaactgaagg |
196 |
Q |
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| T |
41710396 |
tagtttcaaatctgtctccttaactgaagg |
41710367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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