View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_high_70 (Length: 251)
Name: NF14353_high_70
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_high_70 |
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Alignment Details
Target: chr1 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 31706491 - 31706712
Alignment:
| Q |
16 |
atgaatgaaagcatttgatgaatggactaaccaactatatttcaatttctactaaaatatgaaagaacaaaaaattacctggccggttcgatgtatataa |
115 |
Q |
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| T |
31706491 |
atgaatgcaagcatttgatgaatggactaaccaactatatttcaatttctactaaaatatgaaagaacaaaaaattacctggccggttcgatgtatataa |
31706590 |
T |
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| Q |
116 |
acagaaactattttcgagtgaagatcacctacaaatatcaatcaccaaatatagtttaatcattttgcaattttgcaaatgaaaacaagtattagtgtct |
215 |
Q |
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| T |
31706591 |
acagaaactattttccagtgaagatcacctacatacatcaatcaccaaatatagtttaatcattttgcaattttgcaaatgaaaacaagtattagtgtct |
31706690 |
T |
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| Q |
216 |
caaaactcgatttattaaaatt |
237 |
Q |
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| T |
31706691 |
caaaactcgatttattaaaatt |
31706712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 38269485 - 38269424
Alignment:
| Q |
84 |
aaaaaattacctggccggttcgatgtatataaacagaaactattttcgagtgaagatcacct |
145 |
Q |
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| T |
38269485 |
aaaaatttacatgtcccgttcgatgtatgtaaacagaaactattttccagtgtagatcacct |
38269424 |
T |
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