View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_high_84 (Length: 208)
Name: NF14353_high_84
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_high_84 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 35816847 - 35817046
Alignment:
| Q |
1 |
tttagttttaattagtttactttagtcttttgtacatttatagagtaatctgaatacttttagccagttagttagagtgttttcctattttctagcttct |
100 |
Q |
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| T |
35816847 |
tttagttttaattagtttactttagttttttgtacatttatagagtaatctgaatacttttagccagttagttagagtgttttcctattttctagctttt |
35816946 |
T |
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| Q |
101 |
agttactttcccttatctctaatgaaaagtggtaggtaacc--nnnnnnnntgaaaagtggtaagttttatactttgttaatcaactctttcataccttt |
198 |
Q |
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| T |
35816947 |
agttactttcccttatctctgatgaaaagtggtaggtaaccaaaaaaaatattaaaagtggtaagttttatactttgttaatcaactctttcataccttt |
35817046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 45093506 - 45093380
Alignment:
| Q |
1 |
tttagttttaattagtttactttagtcttttgtacatttatagagtaatctgaatacttttagccagttagttagagtgttttcctattttctagcttct |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||| || | |
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| T |
45093506 |
tttagttttaattagtttactttagttttttgtacatttatagagtaatcagaatacttttagccag----ttagagtgttttcatattttctaggttat |
45093411 |
T |
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| Q |
101 |
agttactttcccttatctctaatgaaaagtg |
131 |
Q |
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| T |
45093410 |
agttactttcccttatccctaatgaaaagtg |
45093380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 45093388 - 45093340
Alignment:
| Q |
150 |
tgaaaagtggtaagttttatactttgttaatcaactctttcataccttt |
198 |
Q |
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||||||||| |||||||||||||||||| |||||||||||||| ||||| |
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| T |
45093388 |
tgaaaagtgataagttttatactttgttcatcaactctttcattccttt |
45093340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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