View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_1 (Length: 978)
Name: NF14353_low_1
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 594; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 594; E-Value: 0
Query Start/End: Original strand, 1 - 625
Target Start/End: Complemental strand, 42798871 - 42798249
Alignment:
| Q |
1 |
cctcccagtccatttctacaagtctttgaatacactcgataagactcctttccaacaatgttcatacattactctgcgtaacataattaacaacagtctc |
100 |
Q |
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| T |
42798871 |
cctcccagtccatttctacaagtctttgaatacactcgataagactcctttccaacaatgttcatacattactctgcgtaacataattaacaacagtctc |
42798772 |
T |
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| Q |
101 |
tctcacaatccacacataactccactgctttaaaacctgtactctttgcaagtcgcaacccttctaaaactccccacaattctgcctcaagctccactca |
200 |
Q |
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| T |
42798771 |
tctcacaatccacacataactccactgctttaaaacctgtactctttgcaagtcgcaacccttctaaaactccccacaattctgcctcaagctccactca |
42798672 |
T |
|
| Q |
201 |
acggcccatgttaaacattttgaaaagcaacagatccagttactgtgattatcccaaagttagccatcacaactggattacattcaaagtctattagctc |
300 |
Q |
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| T |
42798671 |
acggcccatgttaaacattttgaaaagcaacagatccagttactgtgattatcccaaagttagccatcgcaactggattacattcaaagtctattagctc |
42798572 |
T |
|
| Q |
301 |
catatatacgtctgaaccctcttgctctacacttccctgcctgtcatggatcaagattttcctaattctgctacgcaaccccaataatagggagcattat |
400 |
Q |
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| T |
42798571 |
catatatacgtctgaaccctcttgctctacacttccctgcctgtcatggatcttgattttcctaattctgctacgcaaccccaataatagggagcattat |
42798472 |
T |
|
| Q |
401 |
aacagcagattggaaaagaaaggtctaaatgaacttataactacattaactacaatgttgacaaagtagtaacatgttccaatattaatatgtgattcta |
500 |
Q |
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| T |
42798471 |
aacagcagattggaaaagaaaggtctaaatgaacttataactacattaactacaatgttgacaaagtagtaacatcttccaatattaatatgtgattcta |
42798372 |
T |
|
| Q |
501 |
tcatgtctgctaaattttaatctgtgattcatacaagcttcccaaatataagctatttctacacagaatcgacaaaagagagcattcatacaaatcaaat |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
42798371 |
tcatgtctgctaaattttaatctgtgattcatacaagcttcccaaatataagctatttctacacagaatcgacaaa--agagcattcatacaaattaaat |
42798274 |
T |
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| Q |
601 |
agaaattggatcagttttaagatat |
625 |
Q |
| |
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| T |
42798273 |
agaaattggatcagttttaagatat |
42798249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 745 - 948
Target Start/End: Complemental strand, 42797791 - 42797601
Alignment:
| Q |
745 |
taattattttggaagttacgttgttttaatatgtatagggaaatggattgaatattttggtgaaggttagataaaactgcttctaaatgacacatcttat |
844 |
Q |
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| T |
42797791 |
taattattttggaagttacgttgttttaatatgtatagggaaatggattgaatattttggtgaaggttagataaaactgcttctaaatgacacatcttat |
42797692 |
T |
|
| Q |
845 |
cttccaaagaagtttttgatagttcaatatccttgttcaattttaccaattcgttggaatacattttctttctctatttgcaggctcaccctttgtttct |
944 |
Q |
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| T |
42797691 |
cttccaaagaagtttttgatagtt-------------caattctaccaattcgttggaatacattttctttctctatttgcaggctcaccctttgtttct |
42797605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 695 - 751
Target Start/End: Complemental strand, 42798208 - 42798152
Alignment:
| Q |
695 |
gcacaactcatattatcaaacggtttcttgatttagcatatagttgataataattat |
751 |
Q |
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| T |
42798208 |
gcacaactcatattatcaaatggtttcttgatttagcatatagttgataataattat |
42798152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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