View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_10 (Length: 649)
Name: NF14353_low_10
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 569; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 569; E-Value: 0
Query Start/End: Original strand, 18 - 649
Target Start/End: Complemental strand, 48354683 - 48354049
Alignment:
| Q |
18 |
gaaaaatgcaatgggattaaagtaatgtaaaccactcttagttaaaaatcgtattgtgcacatagtgctttagaagggtgcggggttttttcttaacaaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48354683 |
gaaaaatgcaatgggattaaagtaatgtaaaccactcttagttaaaaattgtattgtgcacatagtgctttagaagggtgcggggttttttcttaacaaa |
48354584 |
T |
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| Q |
118 |
agttgattgtgcttttttaaaatgattatcaacacatagcagcaaattttacaatagaaccatatgcttctgttttatatttagtagagtgtaacaagtg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
48354583 |
agttgattgtgcttttttaaaatgattatcaacacatagcagcaaattttacaatagaaccttatgcttctgttttatatttagtagagtgtaagaagtg |
48354484 |
T |
|
| Q |
218 |
acaagttgatcaatcttgaattcttcataagctgtattagccgttaagaaacatgctgcatggcaatgaactttcaatcactataaaaagtttattagac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48354483 |
acaagttgatcaatcttgaattcttcataagctgtattagccgttaaaaaacatgctgcatggcaatgaactttcaatcactataaaaagtttattagac |
48354384 |
T |
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| Q |
318 |
taaggaattcataactataacttacttctccctttctggcctcatctaatcgattgtaaaaccgtaaaacgtaaagatcctggggaagaatac-nnnnnn |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48354383 |
taaggaattcataactataacttacttctccctttctggcctcatctaatcgattgtaaaaccgtaaaacgtaaagatcctggggaagaatacaaaaaaa |
48354284 |
T |
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| Q |
417 |
nnntatacttagcttccatcaaattcagaagttaaatgaaacaagtacactcaaaattcaaatcaacagatattgtt--agtttaacctcaaacagaata |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
48354283 |
aaatatacttagcttccatcaaattcagaagttaaatgaaacaagtacactcaaaattcaaatcaacagatattgttagagtttaacctcaaacagaata |
48354184 |
T |
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| Q |
515 |
ttccatttccattaaaaccaacatacaatcagtttaatttagtaaacaaaatgagataagtttgcaagaattttaccccgtcgttgacctttctgcgacc |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48354183 |
ttccatttccattaaaaccaacatacaatcagtttaatttagtaaacacaatgagataagtttgcaagaattttaccccgtcgttgacctttctgcgacc |
48354084 |
T |
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| Q |
615 |
tagctcctccaccattagtgtggggcctacaattc |
649 |
Q |
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| T |
48354083 |
tagctcctccaccattagtgtggggcctacaattc |
48354049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 335 - 407
Target Start/End: Complemental strand, 21926738 - 21926666
Alignment:
| Q |
335 |
taacttacttctccctttctggcctcatctaatcgattgtaaaaccgtaaaacgtaaagatcctggggaagaa |
407 |
Q |
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|||||||||||||||||||||| ||| ||||||||||||||||| | || || |||| |||||| ||||||| |
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| T |
21926738 |
taacttacttctccctttctggtctcgtctaatcgattgtaaaagcatatcacataaaaatcctgtggaagaa |
21926666 |
T |
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