View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_13 (Length: 601)
Name: NF14353_low_13
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 62 - 536
Target Start/End: Original strand, 48881377 - 48881857
Alignment:
| Q |
62 |
aaatttgtcaacaacatgcgctagaaatagggggaaggtgcgtttttggctcgatttaggaggagaaacaacacac------atcaaattctgtttttcc |
155 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
48881377 |
aaatttgtcaacaacatgcgctagaaatagggggaaggtgcgtttttggctcgatttaggaggagaaacaacacacgtacgtatcaaattctgtttttcc |
48881476 |
T |
|
| Q |
156 |
caaccaaatatatagcatagatannnnnnnnnnnnnnnnctaaaaataatgaacgatcacattctgtttttcccaagcaaaaatatagcataattttgtt |
255 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48881477 |
caaccaaatatatagcatagatatttttatttttattttctaaaaataatgaacgatcacattctgtttttcccaagcaaaaatatagcataattttgtt |
48881576 |
T |
|
| Q |
256 |
tccactatattacaagaacccaaattcgaccaaaagcaaatgaaattattttactattttattgaactaaggaagtccacaattttagacaaattatgat |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
48881577 |
tccactatattacaagaacccaaattcgaccaaaagcaaatgcaattattttactattttattgaattaaggaagtccacgattttagacaaattatgat |
48881676 |
T |
|
| Q |
356 |
acattttcctgtgtatgcatgtatttaattattttttgatgtgaatcacctatgaactgtgtagctttgcttccgagtgtttacaagaaagtacatcatg |
455 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48881677 |
acattttcctgtgtatgcatgtatttaattatttttttatgtgaatggtgtatgaactgtgtagctttgcttccgagtgtttacaagaaagtacatcatg |
48881776 |
T |
|
| Q |
456 |
tatgccattttcctacaatacaagttcaatctgtcagctgaaattcattaaattatagataaagcataagaaacaaatgta |
536 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48881777 |
tatgccattttcctacaatacaagttcaatctgtcagctgaaattcattaaattatagataaagcataagaaacaaatgta |
48881857 |
T |
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