View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_18 (Length: 534)
Name: NF14353_low_18
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 51740347 - 51739998
Alignment:
| Q |
1 |
cgttacaaatactataaaccccaacatcactgacattactgcatttattgatgtccaaaaacttgatccgttggcaaccacttgcaaggctcatcagccc |
100 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51740347 |
cgttacaaatactagaaaccccaacatcactgacagtactgcatttattgatgtccaaaaacttgatccgttggcaaccacttgcaaggctcatcagccc |
51740248 |
T |
|
| Q |
101 |
attgtcagtgatacttgtgcatccttgcaataccaactcttctaaattacgacagtttttggacagagcttctagtatactattcgtaacaaatctgcac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
51740247 |
attgtcagtgatacttgtgcatccttgcaataccaactcttctaaattacgacagtttttggacagagcttctagtatactatccgtaacaaatctgcac |
51740148 |
T |
|
| Q |
201 |
ccagtaagatgcaatatccacaggtcgcaacagcctttggcaacagcggacaatcccttatcagtcagctttcggcagtaggacacatccaaggactgta |
300 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
51740147 |
ccagtaagatgcaatatccgcaggtcgcaacagcctttggcaacagcggacaatcccttatcagtcagctttcggcagtaggacacatccaaggaatgta |
51740048 |
T |
|
| Q |
301 |
ataaggaaaggccgtcaccaatagctatcattccaacatccgtaattcct |
350 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
51740047 |
ataaggaaaggccgtcaccaatagctttcattccaacatccgtaattcct |
51739998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 348 - 486
Target Start/End: Complemental strand, 51738473 - 51738335
Alignment:
| Q |
348 |
cctttacagttatgcaaattgaggatattcaagcatctaaagccattagcaataatagcaagatcagaatcagtaacaccaggatggaacgaacgagaaa |
447 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
51738473 |
cctttacagttatgcaaattgaggatcctcaagcatctaaagccattagcaataacagcaagatcagaatcagtaacaccaggatagaacgaacgagaaa |
51738374 |
T |
|
| Q |
448 |
tagactgagcaaggtccaattcaaccaagcgtgtgaacc |
486 |
Q |
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| T |
51738373 |
tagactgagcaaggtccaattcaaccaagcgtgtgaacc |
51738335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 516
Target Start/End: Complemental strand, 2597373 - 2597342
Alignment:
| Q |
485 |
ccctctaataacctttaattaaataataacct |
516 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
2597373 |
ccctctaataacctttaattaaataataacct |
2597342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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