View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14353_low_2 (Length: 913)
Name: NF14353_low_2
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 277
Target Start/End: Complemental strand, 26304040 - 26303780
Alignment:
| Q |
19 |
catacgtcactatgattatttgcaaaattaaatgtcatgacacatgaccaatttaattaaaacattatttggttggttctttaaattattattttttaat |
118 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26304040 |
catacgtcactatgattatttgcgaaattaaatgtcatgacacatgaccaatttaattaaaacattatttggttggttctttaaattattattttttaat |
26303941 |
T |
|
| Q |
119 |
gacatgtttctttttacagaaaaagctatgatggagatgaaataatcaagagcaggaaaaagctaagcgagttaatgagtcaaacttcttataaaccatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26303940 |
gacatgtttctttttacagaaaaagctgtgatggagatgaaataatcaagagcaggaaaaagctaagcgagttaatgagtcaaacttcttataaaccatt |
26303841 |
T |
|
| Q |
219 |
tggtggaccaatttgctcgtaagtaact--aaatgtcacttgagtaaacttcaattgtttg |
277 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
26303840 |
tggtggaccaatttgctcgtaagtaactgaatatgtcacttgagtaaacttcaattgtttg |
26303780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 593 - 905
Target Start/End: Complemental strand, 26303494 - 26303182
Alignment:
| Q |
593 |
gaaaagccaataaggtcaagattcttctggtgtaattattatattgtcaaaaatcaaaataatgnnnnnnnncttgtaaaagaaatacaaaatataagtt |
692 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
26303494 |
gaaaagccaataaggtcaagattctgctggtgtaattattatattgtcaaaaatcaaaataatgttttttt-cttgtaaaagaaatacgaaatataagtt |
26303396 |
T |
|
| Q |
693 |
gacattgattgctagattatgatgtttaccaactcttgtctgcatgggctagttatacttaatagctgaatttcttgcaacttaatttaatgcatcaaag |
792 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26303395 |
gacattgattgctagattatgatgtttaccaactcttgtctgcatgggctagttatacttaatagctgaatttcttgcaacttaatttaatgcatcaaag |
26303296 |
T |
|
| Q |
793 |
ttagaatagtatgagctgcatactttatgtgcccatatgtgtaaaga-cacattcaatattgtgtatttaattttgattatgaaaggtgagaccataaat |
891 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||| | |||| | |||||| ||| |||||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
26303295 |
ttagaatagtatgagctacatactttatatgcccataattctaaatatcacattgaattttgtgtatttaattgtgattatgaaagatgagaccctaaat |
26303196 |
T |
|
| Q |
892 |
agtagttgatgatg |
905 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26303195 |
agtagttgatgatg |
26303182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 455 - 567
Target Start/End: Complemental strand, 26303603 - 26303491
Alignment:
| Q |
455 |
cacatatcgaaaactgacacagacactcttttaatctaaagtgtcgaagctacttagctgttgactagtttgtaagttgggcaataaaaaactaaacaag |
554 |
Q |
| |
|
||||||||||| || |||||| |||||||||||| |||||||||| ||||||||| | |||| ||||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
26303603 |
cacatatcgaacaccgacacaaacactcttttaaactaaagtgtcaaagctacttgggtgttaactagtttgtaagttggtcaattaaaaacaaaacaag |
26303504 |
T |
|
| Q |
555 |
aaatatactgaaa |
567 |
Q |
| |
|
||||||||||||| |
|
|
| T |
26303503 |
aaatatactgaaa |
26303491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 329 - 426
Target Start/End: Complemental strand, 26303782 - 26303683
Alignment:
| Q |
329 |
ttggtcatataggtcgaagatacttt--gtaacacacaagttgagtatcaatagtattgacctaccaaacattgatagacacgacaccaatacttacacg |
426 |
Q |
| |
|
|||||| ||||||| ||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
26303782 |
ttggtcttataggtggaagatattttatgtaacacacaagttgagtatcaatagtgttgacctaccaaacattgatagacacgacaccgatacttacacg |
26303683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University