View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14353_low_20 (Length: 522)

Name: NF14353_low_20
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14353_low_20
NF14353_low_20
[»] chr3 (5 HSPs)
chr3 (58-518)||(16456696-16457153)
chr3 (11-122)||(36086854-36086965)
chr3 (1-115)||(7404064-7404178)
chr3 (1-40)||(16456656-16456695)
chr3 (442-510)||(2180256-2180324)
[»] chr8 (9 HSPs)
chr8 (267-514)||(6403916-6404169)
chr8 (355-518)||(31347956-31348127)
chr8 (85-162)||(31367833-31367910)
chr8 (1-115)||(25640982-25641096)
chr8 (1-115)||(27813831-27813945)
chr8 (173-268)||(31367681-31367775)
chr8 (1-120)||(4743817-4743935)
chr8 (423-498)||(29345769-29345844)
chr8 (360-397)||(5650550-5650587)
[»] chr7 (4 HSPs)
chr7 (313-518)||(2931621-2931834)
chr7 (423-503)||(20277044-20277124)
chr7 (1-115)||(4683062-4683177)
chr7 (26-105)||(27137540-27137618)
[»] chr2 (6 HSPs)
chr2 (1-117)||(31481900-31482014)
chr2 (1-115)||(31332085-31332200)
chr2 (1-115)||(31338815-31338930)
chr2 (1-106)||(30269038-30269143)
chr2 (358-467)||(41573748-41573865)
chr2 (306-407)||(26735173-26735273)
[»] chr1 (3 HSPs)
chr1 (1-109)||(47694248-47694356)
chr1 (360-422)||(897883-897945)
chr1 (33-117)||(47799653-47799737)
[»] chr6 (2 HSPs)
chr6 (1-115)||(30824928-30825042)
chr6 (358-466)||(6673241-6673356)
[»] chr5 (1 HSPs)
chr5 (3-101)||(7413010-7413108)
[»] chr4 (1 HSPs)
chr4 (1-115)||(53302355-53302469)


Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 58 - 518
Target Start/End: Original strand, 16456696 - 16457153
Alignment:
Q  58 gtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtgcaaattctttactaaggggatcatatcaacgtttttaagcatgttaca 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456696 gtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtgcaaattctttactaaggggatcatatcaacgtttttaagcatgttaca 16456795  T
Q  158 ttatgtgcaaattcgtttatgtcattcttcacaataagttaagcttgttcagatcaacatgttgtattattacttgttctggggttctgaatttgtcaaa 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16456796 ttatgtgcaaattcgtttatgtcattcttcacaataagttaagcttgttcagatcaacatgttgtattattacttgttctggggttctgaatttgtcaaa 16456895  T
Q  258 aattatcttagctagtctgattgaatgcatatttcatagtggaaattagaacagaacctacatatatagttttgatacctcataaaaaaggcttgttttg 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||    
T  16456896 aattatcttagctagtctgattgaatgcatatttcatagtggaaattagaacagaacctacatatatagttttgatacctcataaaaaaggcttg--ttg 16456993  T
Q  358 cacattgttcttcttacctttacattctttattggatgaaaacttctaatagttatagtatgtaagtgttgcatacttcatttccattatgaaatcacat 457  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  16456994 cacattgttcttcttacctttacatgctttattggatgaaaacttctaatagtta-agtatgtaagtgttgcatacttcatttccattatgaaatcaaat 16457092  T
Q  458 tacaaatgttagtatggggaaatacttggagttgtaaatctgaatgtagtttatcttcaaa 518  Q
    | |||||||| ||||||||||||| |||||||||||||||| |||| | ||||||||||||    
T  16457093 ttcaaatgtttgtatggggaaatatttggagttgtaaatctaaatgaattttatcttcaaa 16457153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 122
Target Start/End: Complemental strand, 36086965 - 36086854
Alignment:
Q  11 tctaatcttagtaacgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtgc 110  Q
    |||||||| |||||  ||||||| |||||| || ||| ||| ||||||||||||||||| ||||  |||||||||||||||| ||||||  ||| |||||    
T  36086965 tctaatctcagtaatctgattcttctgcacataagctcgtttaaggtgtttggattctgcaaaactaatggaattgtttgttaggaatgtgattgtgtgc 36086866  T
Q  111 aaattctttact 122  Q
    || |||||||||    
T  36086865 aagttctttact 36086854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 7404064 - 7404178
Alignment:
Q  1 tatttacttctctaatcttagtaacgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgc 100  Q
    |||||||| ||||||||| || || |||||||||||||| |||||||  | ||| || ||| ||||||| ||||||||  |||||||||||| |||||||    
T  7404064 tatttactcctctaatctcagaaatgtgattctcctgcatctatgctcttaaaatgtttttcgattctgcaaaatgaacagaattgtttgttcggaatgc 7404163  T
Q  101 aattatgtgcaaatt 115  Q
     |||||||| |||||    
T  7404164 gattatgtgtaaatt 7404178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 16456656 - 16456695
Alignment:
Q  1 tatttacttctctaatcttagtaacgtgattctcctgcac 40  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  16456656 tatttacttctctaatcttagtaatgtgattctcctgcac 16456695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 442 - 510
Target Start/End: Complemental strand, 2180324 - 2180256
Alignment:
Q  442 cattatgaaatcacattacaaatgttagtatggggaaatacttggagttgtaaatctgaatgtagttta 510  Q
    ||||||||||| | ||| |||||||| ||||| | | ||| ||||||||| ||||||||||| ||||||    
T  2180324 cattatgaaataaaatttcaaatgtttgtatgagaacatatttggagttgcaaatctgaatgaagttta 2180256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 1e-82; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 267 - 514
Target Start/End: Complemental strand, 6404169 - 6403916
Alignment:
Q  267 agctagtctgattgaatgcatatttcatagtggaaattagaacagaacctacatatatagttttgatacctcataaaaaaggcttgttttgcacattgtt 366  Q
    ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||  | ||||||||||||    
T  6404169 agctagtctgattgaatgcacgtttcatagtggaaattagaacaaaacctacatatatagttttgatacctcataaagaaggct--tattgcacattgtt 6404072  T
Q  367 cttcttacctttacattctttattggatgaaaacttctaatagttatagtatgtaa--------gtgttgcatacttcatttccattatgaaatcacatt 458  Q
    |||||||||||||||| ||||||| || ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| |||    
T  6404071 cttcttacctttacatgctttatttgacgaaaacttctaatagttatagtatgtaattgaaattgtgttgcatacttcatttccattatgaaatcaaatt 6403972  T
Q  459 acaaatgttagtatggggaaatacttggagttgtaaatctgaatgtagtttatctt 514  Q
     |||||||| ||||||||||||| |||||||||||||| |||||  ||||||||||    
T  6403971 tcaaatgtttgtatggggaaatatttggagttgtaaatttgaattaagtttatctt 6403916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 355 - 518
Target Start/End: Complemental strand, 31348127 - 31347956
Alignment:
Q  355 ttgcacattgttcttcttacctttacattctttattggatgaaaacttctaatagttatagtatgtaa--------gtgttgcatacttcatttccatta 446  Q
    ||||||||||||| |||||||||||||| |||||| |||  |||||||||||||||||| ||||||||        ||||||||| ||||| ||| ||||    
T  31348127 ttgcacattgttcatcttacctttacatgctttatgggacaaaaacttctaatagttatggtatgtaattgaaattgtgttgcattcttcacttcaatta 31348028  T
Q  447 tgaaatcacattacaaatgttagtatggggaaatacttggagttgtaaatctgaatgtagtttatcttcaaa 518  Q
    |||||||| ||| |||||||| || |||| ||||| ||||||||||||||||||||| | ||||||||||||    
T  31348027 tgaaatcaaatttcaaatgtttgtttgggtaaatatttggagttgtaaatctgaatgaaatttatcttcaaa 31347956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 85 - 162
Target Start/End: Complemental strand, 31367910 - 31367833
Alignment:
Q  85 tgtttgtttggaatgcaattatgtgcaaattctttactaaggggatcatatcaacgtttttaagcatgttacattatg 162  Q
    |||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  31367910 tgtttgtttggaatgcaattatgttcaaattctttacttaggggatcatatcaatgtttttaagcatgttacattatg 31367833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 25641096 - 25640982
Alignment:
Q  1 tatttacttctctaatcttagtaacgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgc 100  Q
    |||||||||||||||||| || || |||||||||||||| |||||||  | ||| || ||| ||||||| ||||||||  |||||||||||| |||||||    
T  25641096 tatttacttctctaatctcagaaatgtgattctcctgcatctatgctcttaaaatgtttttcgattctgcaaaatgaacagaattgtttgttcggaatgc 25640997  T
Q  101 aattatgtgcaaatt 115  Q
     |||||||| |||||    
T  25640996 gattatgtgtaaatt 25640982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 27813945 - 27813831
Alignment:
Q  1 tatttacttctctaatcttagtaacgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgc 100  Q
    |||||||||||||||||| || || |||||||||||||| |||||||  ||||| |||||| ||||||| |||| ||| ||| |||||||||  ||||||    
T  27813945 tatttacttctctaatctcagcaatgtgattctcctgcatctatgctctttaaatgtgtttcgattctgcaaaacgaacggatttgtttgttcagaatgc 27813846  T
Q  101 aattatgtgcaaatt 115  Q
     |||||||| |||||    
T  27813845 gattatgtgtaaatt 27813831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 173 - 268
Target Start/End: Complemental strand, 31367775 - 31367681
Alignment:
Q  173 tttatgtcattcttcacaataagttaagcttgttcagatcaacatgttgtattattacttgttctggggttctgaatttgtcaaaaattatcttag 268  Q
    ||||||||||  |||| ||||||||  |||||||||||  ||||||||||||| ||||||||| | ||||| ||||| ||||||||||||||||||    
T  31367775 tttatgtcatatttcataataagtttcgcttgttcagagaaacatgttgtattgttacttgttat-gggttttgaatatgtcaaaaattatcttag 31367681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 4743935 - 4743817
Alignment:
Q  1 tatttacttctctaatcttagtaacgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgc 100  Q
    |||||||||||||||||| ||||| ||||||  | ||||||||||   ||||||||| |||| |||| |||||||| || ||  ||||| |||| ||| |    
T  4743935 tatttacttctctaatctcagtaatgtgattgccgtgcacctatgtccgttaaaggtctttgaattccgtaaaatgtat-gatctgtttatttgaaatac 4743837  T
Q  101 aattatgtgcaaattcttta 120  Q
     |||||||||||||||||||    
T  4743836 gattatgtgcaaattcttta 4743817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 498
Target Start/End: Complemental strand, 29345844 - 29345769
Alignment:
Q  423 gtgttgcatacttcatttccattatgaaatcacattacaaatgttagtatggggaaatacttggagttgtaaatct 498  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| ||||| | | ||| || |||||| ||||||    
T  29345844 gtgttgcatagttcatttccattatgaaatcaaatttcaaatgtttgtatgagaacatatttagagttgcaaatct 29345769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 360 - 397
Target Start/End: Original strand, 5650550 - 5650587
Alignment:
Q  360 cattgttcttcttacctttacattctttattggatgaa 397  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  5650550 catttttcttcttacctttacatgctttattggatgaa 5650587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 313 - 518
Target Start/End: Original strand, 2931621 - 2931834
Alignment:
Q  313 acctacatatatagttttgatacctcataaaaaaggcttgttttgcacattgttcttcttaccttta--cattctttattggatgaaaacttctaatagt 410  Q
    |||||||||||||||||||||||||||||   ||||||| ||   | ||| ||| ||||||||||||  ||| ||||||||||| |||||||||||||||    
T  2931621 acctacatatatagttttgatacctcatagcgaaggcttctta--ctcatggtttttcttacctttatacatgctttattggataaaaacttctaatagt 2931718  T
Q  411 tatagtatgtaa--------gtgttgcatacttcatttccattatgaaatcacattacaaatgttagtatggggaaatacttggagttgtaaatctgaat 502  Q
    ||||||||||||        |||||||||||||||||||||||||||||||| |||| ||||||| ||||| | ||||| || |||||||||||||||||    
T  2931719 tatagtatgtaattgaaattgtgttgcatacttcatttccattatgaaatcaaattataaatgtttgtatgagaaaatatttagagttgtaaatctgaat 2931818  T
Q  503 gtagtttatcttcaaa 518  Q
      ||||||||||||||    
T  2931819 taagtttatcttcaaa 2931834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 423 - 503
Target Start/End: Original strand, 20277044 - 20277124
Alignment:
Q  423 gtgttgcatacttcatttccattatgaaatcacattacaaatgttagtatggggaaatacttggagttgtaaatctgaatg 503  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||| ||||| | | ||| ||||||||| |||||| ||||    
T  20277044 gtgttgcatagttcatttccattatgaaatcaaatttcaaatgtttgtatgagaacatatttggagttgcaaatctaaatg 20277124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 4683062 - 4683177
Alignment:
Q  1 tatttacttctctaatcttagtaacgtgattctcctgcacctatgct-tgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatg 99  Q
    |||||||||||||||||| || || |||||||||||||| ||||||| |   ||| || ||| ||||||| ||||||||  ||||||||| || ||||||    
T  4683062 tatttacttctctaatctcagaaatgtgattctcctgcatctatgctcttaaaaatgtttttcgattctgcaaaatgaacagaattgtttcttcggaatg 4683161  T
Q  100 caattatgtgcaaatt 115  Q
    | |||||||| |||||    
T  4683162 cgattatgtgtaaatt 4683177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 105
Target Start/End: Complemental strand, 27137618 - 27137540
Alignment:
Q  26 gtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaatt-gtttgtttggaatgcaatta 105  Q
    ||||||||| ||||| |||||||||||  |||||||| |||| | |||| |||||||||| ||||||||||| ||||||||    
T  27137618 gtgattctcttgcac-tatgcttgttac-ggtgtttgaattccgaaaaacgaatggaatttgtttgtttggattgcaatta 27137540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 31482014 - 31481900
Alignment:
Q  1 tatttacttctctaatcttagtaacgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgc 100  Q
    |||||||||||||||||  ||||| |||||||| |||| ||||||||||||||| |  ||||||||||| |||| |||||| ||||||||||||||||||    
T  31482014 tatttacttctctaatc--agtaatgtgattcttctgcccctatgcttgttaaatgcatttggattctgcaaaacgaatggcattgtttgtttggaatgc 31481917  T
Q  101 aattatgtgcaaattct 117  Q
     ||||| || |||||||    
T  31481916 gattatctgaaaattct 31481900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 31332085 - 31332200
Alignment:
Q  1 tatttacttctctaatcttagtaacgtgattctcctgcacctatgct-tgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatg 99  Q
    |||||||||||||||||| || || |||||||||||||| ||||||| |   ||| || ||| ||||||| ||||||||  |||||||||||| ||||||    
T  31332085 tatttacttctctaatctcagaaatgtgattctcctgcatctatgctcttaaaaatgtttttcgattctgcaaaatgaacagaattgtttgttcggaatg 31332184  T
Q  100 caattatgtgcaaatt 115  Q
    | |||||||| |||||    
T  31332185 cgattatgtgtaaatt 31332200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 31338815 - 31338930
Alignment:
Q  1 tatttacttctctaatcttagtaacgtgattctcctgcacctatgct-tgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatg 99  Q
    |||||||||||||||||| || || |||||||||||||| ||||||| |   ||| || ||| ||||||| ||||||||  |||||||||||| ||||||    
T  31338815 tatttacttctctaatctcagaaatgtgattctcctgcatctatgctcttaaaaatgtttttcgattctgcaaaatgaacagaattgtttgttcggaatg 31338914  T
Q  100 caattatgtgcaaatt 115  Q
    | |||||||| |||||    
T  31338915 cgattatgtgtaaatt 31338930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 30269143 - 30269038
Alignment:
Q  1 tatttacttctctaatcttagtaacgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgc 100  Q
    |||||||||||||||||| || || |||||||||||||| |||||||  | ||| || ||| |||| || ||||||||  || ||||||||| |||||||    
T  30269143 tatttacttctctaatctcagaaatgtgattctcctgcatctatgctcttaaaatgtttttcgattttgcaaaatgaacagatttgtttgttcggaatgc 30269044  T
Q  101 aattat 106  Q
     |||||    
T  30269043 gattat 30269038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 467
Target Start/End: Complemental strand, 41573865 - 41573748
Alignment:
Q  358 cacattgttcttcttacctttacattctttattggatgaaaacttctaatagttatagtatgtaa--------gtgttgcatacttcatttccattatga 449  Q
    |||||| || || |||||||||||| ||||||||||| ||||||| ||||  || ||||||||||        |||||| ||| || |||||||||||||    
T  41573865 cacatttttatttttacctttacatgctttattggataaaaacttgtaatcattttagtatgtaatcaaaattgtgttgtatagtttatttccattatga 41573766  T
Q  450 aatcacattacaaatgtt 467  Q
    ||||| ||| ||||||||    
T  41573765 aatcaaatttcaaatgtt 41573748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 407
Target Start/End: Complemental strand, 26735273 - 26735173
Alignment:
Q  306 gaacagaacctacatatatagttttgatacctc-ataaaaaaggcttgttttgcacattgttcttcttacctttacattctttattggatgaaaacttct 404  Q
    ||||| |||||| ||||||| ||||||| |||| ||||  ||||||||||   |||  | |||||||||||||||||| |||||||||||| |||||| |    
T  26735273 gaacataacctagatatataattttgatgcctccataatgaaggcttgtta--caccgttttcttcttacctttacatgctttattggatgtaaactttt 26735176  T
Q  405 aat 407  Q
    |||    
T  26735175 aat 26735173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 47694248 - 47694356
Alignment:
Q  1 tatttacttctctaatcttagtaacgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgc 100  Q
    ||||||||||||||||||  |||| |||||| | || |||||||| |  || ||||||||||| ||||| | |||||| ||||||||||||||| |||||    
T  47694248 tatttacttctctaatctccgtaatgtgattattctacacctatgttcattcaaggtgtttggtttctgcacaatgaacggaattgtttgtttgtaatgc 47694347  T
Q  101 aattatgtg 109  Q
     ||||||||    
T  47694348 gattatgtg 47694356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 422
Target Start/End: Complemental strand, 897945 - 897883
Alignment:
Q  360 cattgttcttcttacctttacattctttattggatgaaaacttctaatagttatagtatgtaa 422  Q
    |||| ||||||||||||||||||  |||||| ||||||||||| |||| ||| ||||||||||    
T  897945 catttttcttcttacctttacatgatttattagatgaaaacttgtaattgttttagtatgtaa 897883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 117
Target Start/End: Original strand, 47799653 - 47799737
Alignment:
Q  33 tcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgcaattatgtgcaaattct 117  Q
    ||||| |||| |||||||||||||| |||| |||||| |||| |||| ||| | |||||| ||||||| ||||| ||||| ||||    
T  47799653 tcctgaacctttgcttgttaaaggtctttgaattctgcaaaacgaatagaagtttttgttcggaatgcgattatatgcaatttct 47799737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 30825042 - 30824928
Alignment:
Q  1 tatttacttctctaatcttagtaacgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgc 100  Q
    ||||||||  |||||||| |  || |||||||||||||| |||||||  ||||| |||||| |||| || |||| ||| ||| ||||||||| |||||||    
T  30825042 tatttactaatctaatctcatcaatgtgattctcctgcatctatgctctttaaatgtgtttcgattttgcaaaacgaacggatttgtttgttcggaatgc 30824943  T
Q  101 aattatgtgcaaatt 115  Q
     |||||||| |||||    
T  30824942 gattatgtgtaaatt 30824928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 466
Target Start/End: Original strand, 6673241 - 6673356
Alignment:
Q  358 cacattgttcttcttacctttacattctttattggatgaaaacttctaatagttatagtatgtaa-------gtgttgcatacttcatttccattatgaa 450  Q
    |||||| || ||||||| ||||||| |||||||||||||||| || |||| ||| ||||||||||       |||||||| | |||||||||||||||||    
T  6673241 cacattctttttcttacatttacatgctttattggatgaaaatttgtaattgttttagtatgtaattatattgtgttgcacagttcatttccattatgaa 6673340  T
Q  451 atcacattacaaatgt 466  Q
    | || ||| |||||||    
T  6673341 aacaaatttcaaatgt 6673356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 3 - 101
Target Start/End: Complemental strand, 7413108 - 7413010
Alignment:
Q  3 tttacttctctaatcttagtaacgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgca 101  Q
    |||||||||| ||| || |||| |||||||||| ||| |||||||  ||||| ||||||  |||||| |||| ||| ||||||||||||| ||||||||    
T  7413108 tttacttctcgaatatttgtaatgtgattctccagcatctatgctctttaaatgtgtttcaattctgcaaaacgaacggaattgtttgttcggaatgca 7413010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 53302469 - 53302355
Alignment:
Q  1 tatttacttctctaatcttagtaacgtgattctcctgcacctatgcttgttaaaggtgtttggattctgtaaaatgaatggaattgtttgtttggaatgc 100  Q
    |||||||||||||||||| || || |||||||||||||| |||||||  | ||| || ||| |||| || ||||||||  || |||||||||  ||||||    
T  53302469 tatttacttctctaatctcagaaatgtgattctcctgcatctatgctcttaaaatgttttttgattttgcaaaatgaacagatttgtttgttcagaatgc 53302370  T
Q  101 aattatgtgcaaatt 115  Q
     |||||||| |||||    
T  53302369 gattatgtgtaaatt 53302355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University