View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_22 (Length: 497)
Name: NF14353_low_22
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_22 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Complemental strand, 227247 - 226764
Alignment:
| Q |
18 |
gttgactagttaagttccacaaagcgcttggaaggaaggaag----tttgaaaaggaaggagaagagttagat----tagattagatggagaaagcggtg |
109 |
Q |
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| T |
227247 |
gttgactagttaagttccacaaagcgcttggaaggaaggaaggaagtttgaaaagga----gaagagttagatagattagattagatggagaaagcggtg |
227152 |
T |
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| Q |
110 |
agagcatacgcagaagttctgagacttgtgcggcgtttaccaaaggattcaagaggttattatgctaagtacgctcgcgagaacttcgttaattaccgtg |
209 |
Q |
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| T |
227151 |
agagcatacgcagaagttctgagacttgtgcggcgtttaccaaaggattcaagaggttattatgctaagtacgctcgcgagaacttcgttaattaccgtg |
227052 |
T |
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| Q |
210 |
aggttgatccttctgattccactactctccatgatctctttcaacgtacctacactcattctctatgggttcttcataaggttcgtccttttttctttac |
309 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
227051 |
aggtcgatccttctgattccactactctccatgatctctttcaacgtacctacactcattctctatgggttcttcataaggttcgtccttttttctttac |
226952 |
T |
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| Q |
310 |
tcattcagttctgatgatggatcttaattgatgattactcatatcgctactgcagtattcggttgatgaatctgtcgctgataagctcaaggtgatatgc |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
226951 |
tcattcagttctgatgatggatcttaattgatgattactcatatcgctactgcagtattcggttgatgaatctgtcgctgataagctcaaggtgatatgc |
226852 |
T |
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| Q |
410 |
tgctgcgattagtgcagctcaactgtttgttgtttttcctcacataacaataataaatttcagttgcattaatattttcctactgctt |
497 |
Q |
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| T |
226851 |
tgctgcgattagtgcagctcaactgtttgttgtttttcctcgcataacaataataaatttcagttgcattaatattttcctactgctt |
226764 |
T |
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