View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14353_low_23 (Length: 483)
Name: NF14353_low_23
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_23 |
 | |
|
| [»] chr3 (7 HSPs) |
| |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] scaffold0221 (2 HSPs) |
| | |
|
| [»] chr6 (5 HSPs) |
| |
|
| [»] scaffold0534 (2 HSPs) |
| | |
|
| [»] scaffold0455 (1 HSPs) |
| | |
|
| [»] scaffold0208 (1 HSPs) |
| | |
|
| [»] scaffold0581 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
| [»] scaffold0050 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 6 - 483
Target Start/End: Original strand, 17622531 - 17623008
Alignment:
| Q |
6 |
gaggagtagcaaaggaatatcactgcttcatcatccggtggtgataaaaataaggagcggaaaacaggagaggctaaagataaagaaaagaagcaataca |
105 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| | ||| |
|
|
| T |
17622531 |
gaggaggagcaaaggaatgtcactgcttcatcatccggtggtgataaaaataaggaacggaaaatgggagaggctaaaggtaaagaaaagaagtagcaca |
17622630 |
T |
|
| Q |
106 |
taaagaagcattnnnnnnngaaacaacagattgaagcacaagattctaatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagat |
205 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17622631 |
taaagaagcatcaaaaaaagaaataacagactgaagcacaagattctgatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagat |
17622730 |
T |
|
| Q |
206 |
gagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagataattgagcttttgaatgacagtggatttggaggaatg |
305 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||| |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17622731 |
gagtatacctaaggtatatgagcctatgcattcagtacatggaaaaagaagaaaagaggagataattgagcttttgaatgacagtggctttggaggaatg |
17622830 |
T |
|
| Q |
306 |
ttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaactttgagaaagagcacatgtggattacattaagcaagaccg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17622831 |
ttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaactttaagaaagagcacatgtggattacattaagcaagaccg |
17622930 |
T |
|
| Q |
406 |
agatacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatgtcggggaagcagattaacgtcgatc |
483 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
17622931 |
aggtacttccattgaaagatgatgatgtacatagggtgtatgagcttccaatggcggggaagcagattaacatcgatc |
17623008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 6 - 483
Target Start/End: Original strand, 17629714 - 17630191
Alignment:
| Q |
6 |
gaggagtagcaaaggaatatcactgcttcatcatccggtggtgataaaaataaggagcggaaaacaggagaggctaaagataaagaaaagaagcaataca |
105 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||| | ||| |
|
|
| T |
17629714 |
gaggaggagcaaaggaatgtcactgcttcatcatccggtggtgataaaaataaggaacggaaaatgggagaggctaaaggtaaagaaaagaagtagcaca |
17629813 |
T |
|
| Q |
106 |
taaagaagcattnnnnnnngaaacaacagattgaagcacaagattctaatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagat |
205 |
Q |
| |
|
||||||||||| |||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17629814 |
taaagaagcatcaaaaaaagaaataacagactgaagcacaagattctgatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagat |
17629913 |
T |
|
| Q |
206 |
gagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagataattgagcttttgaatgacagtggatttggaggaatg |
305 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||| |||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17629914 |
gagtatacctaaggtatatgagcctatgcattcagtacatggaaaaagaagaaaagaggagataattgagcttttgaatgacagtggctttggaggaatg |
17630013 |
T |
|
| Q |
306 |
ttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaactttgagaaagagcacatgtggattacattaagcaagaccg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
17630014 |
ttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaactttaagaaagagcacatgtggattacattaagcaagaccg |
17630113 |
T |
|
| Q |
406 |
agatacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatgtcggggaagcagattaacgtcgatc |
483 |
Q |
| |
|
|| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
17630114 |
aggtacttccattgaaagatgatgatgtacatagggtgtatgagcttccaatggcggggaagcagattaacatcgatc |
17630191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 6 - 483
Target Start/End: Original strand, 1375111 - 1375593
Alignment:
| Q |
6 |
gaggagtagcaaaggaatatcactgcttcatcatccggtggtgataaaaataaggagcggaaaacaggagaggctaaagataaagaaaagaagcaataca |
105 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
1375111 |
gaggagtagcaaaggaatgtcactacttcatcatccggtggtgataaaaataaggagcggaaaacaggagaggctaaaggtaaagaaaagaagcagcaca |
1375210 |
T |
|
| Q |
106 |
taaagaagcattnnnnnnn----gaaacaacagattgaagcacaagattctaatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcaca |
201 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1375211 |
taaagaaacataaaaaaaaaaaagaaacaacagactgaagcacaagattctgatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcaca |
1375310 |
T |
|
| Q |
202 |
agatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagataattgagcttttgaatgacagtggatttggagg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||| |||||||| |||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
1375311 |
agatgagtatacctaaggtatatgagcttatgcattcaatacatggcaaaagaagaaaagaggagataattgagcttttgaatgacaatggctttggagg |
1375410 |
T |
|
| Q |
302 |
aatgttgcatatctgcaactgga-caaaagtccacactttctttgtggattgggttgttagaaactttgagaaagagcacatgtggattacattaagcaa |
400 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
1375411 |
aatgttgcatatctgcaactggaccaaaagtccacactttctttgtggattgggttgttagaaactttgacaaaaagcacatgtggattacattaagcaa |
1375510 |
T |
|
| Q |
401 |
gaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatgtcggggaagcagattaacgtcgatc |
483 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
1375511 |
gaccgaggtacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatggcggggaagcagattaacgttgatc |
1375593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 17629570 - 17629677
Alignment:
| Q |
6 |
gaggagtagcaaaggaatatcactgcttcatcatccggtggtgataaaaataaggagcggaaaacaggagaggctaaagataaagaaaagaagcaataca |
105 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| |
|
|
| T |
17629570 |
gaggaggagcaaaggaatgtcactgcttcatcatccggtggtgataaaaataaggagcggaaaataggagaggctaaaggtaaagaaaagaagcagcaca |
17629669 |
T |
|
| Q |
106 |
taaagaag |
113 |
Q |
| |
|
|||||||| |
|
|
| T |
17629670 |
taaagaag |
17629677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 17622387 - 17622494
Alignment:
| Q |
6 |
gaggagtagcaaaggaatatcactgcttcatcatccggtggtgataaaaataaggagcggaaaacaggagaggctaaagataaagaaaagaagcaataca |
105 |
Q |
| |
|
|||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| |
|
|
| T |
17622387 |
gaggaggagcaaaggaatgtcactgtttcatcatccggtggtgataaaaataaggagcggaaaataggagaggctaaaggtaaagaaaagaagcagcaca |
17622486 |
T |
|
| Q |
106 |
taaagaag |
113 |
Q |
| |
|
|||||||| |
|
|
| T |
17622487 |
taaagaag |
17622494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 193 - 472
Target Start/End: Complemental strand, 11980811 - 11980532
Alignment:
| Q |
193 |
tgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagataattgagcttttgaatgacagtgg |
292 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| |||||| | ||| | |||| |||| |||||||| |||||||| | ||||||||||| ||||| |
|
|
| T |
11980811 |
tgaggcacaagcttagcatacctaaggtctatgaccttatgaagtcaatagatggaaaaagaagaaaagatcagataattcaacttttgaatgagagtgg |
11980712 |
T |
|
| Q |
293 |
atttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaactttgagaaagagcacatgtggattaca |
392 |
Q |
| |
|
|||||||||||| | ||||| ||||| ||||||||| ||||||| ||||||||||| |||||||| ||| ||||||| || ||| | |||||||| | | |
|
|
| T |
11980711 |
gtttggaggaatggttcatatatgcaaatggacaaaaatccacacattctttgtggaatgggttgtcagacactttgaaaaggagaatatgtggataaga |
11980612 |
T |
|
| Q |
393 |
ttaagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatgtcggggaagcagat |
472 |
Q |
| |
|
| |||||||| || | || ||||||||||| || ||||| || || |||||| | || |||||| ||||| ||||||| |
|
|
| T |
11980611 |
ctgagcaagacggatgtgctcccattgaaagaagaagatgtgcacagagtgtatcatctcccaatggcgggggagcagat |
11980532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 193 - 336
Target Start/End: Complemental strand, 8059746 - 8059603
Alignment:
| Q |
193 |
tgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagataattgagcttttgaatgacagtgg |
292 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| |||| | | ||| | |||| |||| |||||||| |||||||| | ||||||||||| ||||| |
|
|
| T |
8059746 |
tgaggcacaagcttagcatacctaaggtctatgaccttacgaagtcaatagatggaaaaagaagaaaagaccagataattcaacttttgaatgagagtgg |
8059647 |
T |
|
| Q |
293 |
atttggaggaatgttgcatatctgcaactggacaaaagtccaca |
336 |
Q |
| |
|
|||||||||||| | ||||| ||||| ||||||||| |||||| |
|
|
| T |
8059646 |
gtttggaggaatggttcatatatgcaaatggacaaaaatccaca |
8059603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 6 - 483
Target Start/End: Original strand, 9553326 - 9553803
Alignment:
| Q |
6 |
gaggagtagcaaaggaatatcactgcttcatcatccggtggtgataaaaataaggagcggaaaacaggagaggctaaagataaagaaaagaagcaataca |
105 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
9553326 |
gaggaggagcaaaggaatgtcactgcttcatcatccgctggtgataaaaataaggagcggaaaacaggagaggctaaaggtaaagaaaagaagcagcaca |
9553425 |
T |
|
| Q |
106 |
taaagaagcattnnnnnnngaaacaacagattgaagcacaagattctaatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagat |
205 |
Q |
| |
|
|||||||| || ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || |||||| ||||||||||||| |
|
|
| T |
9553426 |
taaagaagaatcaaaaaaagaaacaacagattgacgcacaagattctgatgaaggaagttcggatgatgaaaatgtgatgcaaagaatgaggcacaagat |
9553525 |
T |
|
| Q |
206 |
gagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagataattgagcttttgaatgacagtggatttggaggaatg |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
9553526 |
gagtatacctaaggtatatgagcttatgcattcagtacatggcaaaagaagaaaagatgagataattgagcttttgaatgacaatggctttggaggaatg |
9553625 |
T |
|
| Q |
306 |
ttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaactttgagaaagagcacatgtggattacattaagcaagaccg |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9553626 |
ttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttataaactttgagaaagagcacatgtggattacattaagcaagaccg |
9553725 |
T |
|
| Q |
406 |
agatacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatgtcggggaagcagattaacgtcgatc |
483 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||| |
|
|
| T |
9553726 |
aggtacttccattgaaagaggatgatatacatagggtgtatgagcttccaatggcggggaagtagattaacgtcgatc |
9553803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 169 - 476
Target Start/End: Complemental strand, 54758253 - 54757946
Alignment:
| Q |
169 |
atgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagat |
268 |
Q |
| |
|
|||| |||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||| |||||| | ||||| |
|
|
| T |
54758253 |
atgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggatgagat |
54758154 |
T |
|
| Q |
269 |
aattgagcttttgaatgacagtggatttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaacttt |
368 |
Q |
| |
|
||| | | |||||||| ||||| ||||| |||||| | |||||||||||||||| | |||||| |||||||||||||||||| | |||| ||||||| |
|
|
| T |
54758153 |
cattaacgtattgaatgaaagtggctttgggggaatggttcatatctgcaactggaacagagtccatactttctttgtggattggatggttaaaaacttt |
54758054 |
T |
|
| Q |
369 |
gagaaagagcacatgtggattacattaagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatgtcggggaagc |
468 |
Q |
| |
|
|| |||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||||||| |||||||| |
|
|
| T |
54758053 |
gacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaatggtggggaagc |
54757954 |
T |
|
| Q |
469 |
agattaac |
476 |
Q |
| |
|
|||||||| |
|
|
| T |
54757953 |
agattaac |
54757946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 160 - 478
Target Start/End: Original strand, 23556 - 23874
Alignment:
| Q |
160 |
gaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaa |
259 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||| |||||| |||||| |
|
|
| T |
23556 |
gaagttcaaatgatgaaaatgcaaaacaaagactgaggtacaagatgagtatacgtaaggtatatgagcttatgcattaagtacattgcaaaagaagaaa |
23655 |
T |
|
| Q |
260 |
agtggagataattgagcttttgaatgacagtggatttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgtt |
359 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23656 |
ataggagataattgagcttttgaatgacagtggctttggaggaatgttgcatatatgcaactggacaaaagtccacactttctttgtggattgggttgtt |
23755 |
T |
|
| Q |
360 |
agaaactttgagaaagagcacatgtggattacattaagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatgt |
459 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23756 |
agaaactttgacaaagagaacatgtggattacattaagaaagactgaggtacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatga |
23855 |
T |
|
| Q |
460 |
cggggaagcagattaacgt |
478 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
23856 |
cagggaagcagattaacgt |
23874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 44
Target Start/End: Original strand, 23450 - 23488
Alignment:
| Q |
6 |
gaggagtagcaaaggaatatcactgcttcatcatccggt |
44 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
23450 |
gaggaggagcaaaggaatgtcactgcttcatcatccggt |
23488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 195 - 483
Target Start/End: Complemental strand, 18758048 - 18757760
Alignment:
| Q |
195 |
aggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagataattgagcttttgaatgacagtggat |
294 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
18758048 |
aggcacaagatgagtatatctaaggtatatgagcttatgcattcagtacatgacaaaagaagaaaagaggagataattgagcttttgaatgacagtggct |
18757949 |
T |
|
| Q |
295 |
ttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaactttgagaaagagcacatgtggattacatt |
394 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| | ||||||||||| || |
|
|
| T |
18757948 |
ttggaggaatgttgcatatctgcaattgaacaaaagtccacactttctttatggattgggttgttaaaaactttgagaaagagtaaatgtggattacgtt |
18757849 |
T |
|
| Q |
395 |
aagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatgtcggggaagcagattaacgtcgatc |
483 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18757848 |
aagcaagaccgaggtacttccattcaaagaggatgatgtacatagggtgtatgagcttccaatggcggggaagcagattaacgtcgatc |
18757760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 153 - 476
Target Start/End: Complemental strand, 28129098 - 28128775
Alignment:
| Q |
153 |
aatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaa |
252 |
Q |
| |
|
|||||||||||||| ||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
28129098 |
aatgaaggaagttcagatgaagaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaac |
28128999 |
T |
|
| Q |
253 |
taagaaaagtggagataattgagcttttgaatgacagtggatttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattg |
352 |
Q |
| |
|
|||||| | |||||| ||| | | ||||| || ||||| ||||| |||||| | |||||||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
28128998 |
aaagaaaggaggagatcattaacgtattgaacgaaagtggctttgggggaatggttcatatctgcaactggaacagagtcaacactttctttgtggattg |
28128899 |
T |
|
| Q |
353 |
ggttgttagaaactttgagaaagagcacatgtggattacattaagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagctt |
452 |
Q |
| |
|
| | |||| ||||||||| |||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||| |
|
|
| T |
28128898 |
gatagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagctt |
28128799 |
T |
|
| Q |
453 |
ccaatgtcggggaagcagattaac |
476 |
Q |
| |
|
|||||| |||||||||| |||||| |
|
|
| T |
28128798 |
ccaatggcggggaagcaaattaac |
28128775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 321 - 483
Target Start/End: Original strand, 18758129 - 18758291
Alignment:
| Q |
321 |
tggacaaaagtccacactttctttgtggattgggttgttagaaactttgagaaagagcacatgtggattacattaagcaagaccgagatacttccattga |
420 |
Q |
| |
|
|||| |||||||||| ||||||||| |||||||||||||| ||||||||||||| |||| ||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
18758129 |
tggataaaagtccacgctttctttgcggattgggttgttaaaaactttgagaaaaagcaaatgtggattaccttaagcaagaccgaggtacttccattga |
18758228 |
T |
|
| Q |
421 |
aagaggatgatgtacatagggtgtatgagcttccaatgtcggggaagcagattaacgtcgatc |
483 |
Q |
| |
|
|||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18758229 |
aagaagaggatgtacatagggtgtatgagcttccaatggcggggaagcagattaacgtcgatc |
18758291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 193 - 472
Target Start/End: Original strand, 22032738 - 22033017
Alignment:
| Q |
193 |
tgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagataattgagcttttgaatgacagtgg |
292 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| |||||| | ||| | |||| |||| |||||||| |||||||| | ||||||||||| ||||| |
|
|
| T |
22032738 |
tgaggcacaagcttagcatacctaaggtctatgaccttatgaagtcaatagatggaaaaagaagaaaagaccagataattcaacttttgaatgagagtgg |
22032837 |
T |
|
| Q |
293 |
atttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaactttgagaaagagcacatgtggattaca |
392 |
Q |
| |
|
|||||||||||| | ||||| ||||| ||||||||| ||||||| ||||||||||| || ||||| ||| ||||||| || ||| | |||||||| | | |
|
|
| T |
22032838 |
gtttggaggaatggttcatatatgcaaatggacaaaaatccacacattctttgtggaatgagttgtcagacactttgaaaaggagaatatgtggataaga |
22032937 |
T |
|
| Q |
393 |
ttaagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatgtcggggaagcagat |
472 |
Q |
| |
|
| ||||||| || | || ||||||||||| || ||||| ||||| |||||| | | |||||| ||||| ||||||| |
|
|
| T |
22032938 |
ctgagcaagatggatgtgctcccattgaaagaagaagatgtgcatagagtgtatcatttcccaatggcgggggagcagat |
22033017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 213 - 299
Target Start/End: Original strand, 18758046 - 18758132
Alignment:
| Q |
213 |
cctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagataattgagcttttgaatgacagtggatttgga |
299 |
Q |
| |
|
||||||||||||||| ||||||||| ||| |||| ||||| ||||||| ||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
18758046 |
cctaaggtatatgaggttatgcatttagtacatgacaaaagaagaaaataggagataattgagtttttgaatgacagtggttttgga |
18758132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 125 - 477
Target Start/End: Original strand, 10566475 - 10566819
Alignment:
| Q |
125 |
gaaacaacagattgaagcacaagattctaatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatat |
224 |
Q |
| |
|
||||||||| | ||| |||||||||| | ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10566475 |
gaaacaacaaaatgatgcacaagattttgatgaaggaagttcagatgatgaaaatgcaaagcaaagactgaggcacaagatgagtatacctaaggtatat |
10566574 |
T |
|
| Q |
225 |
gagcttatgcattcagttcatggcaaaataagaaaagtggagataattgagcttttgaatgacagtggatttggaggaatgttgcatatctgcaactgga |
324 |
Q |
| |
|
||||||||| | ||||| ||||||||| | || ||||||| | | |||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
10566575 |
gagcttatgaactcagtaaatggcaaaagacga--------gataattaacgtattgaatgacagtggctttggaggaatgttgcatatctggaactgga |
10566666 |
T |
|
| Q |
325 |
caaaagtccacactttctttgtggattgggttgttagaaactttgagaaagagcacatgtggattacattaagcaagaccgagatacttccattgaaaga |
424 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
10566667 |
atagagtccacactttctttgtggattaggttgttagaaactttgacaaagagaacatgtggattgcattaagcaagaccgaggtacttccattgaaaga |
10566766 |
T |
|
| Q |
425 |
ggatgatgtacatagggtgtatgagcttccaatgtcggggaagcagattaacg |
477 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
10566767 |
ggaagatgtacatagggtctatgagcttccaatggcggggaagcagattaacg |
10566819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 125 - 477
Target Start/End: Complemental strand, 10569459 - 10569115
Alignment:
| Q |
125 |
gaaacaacagattgaagcacaagattctaatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatat |
224 |
Q |
| |
|
||||||||| | ||| |||||||||| | ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10569459 |
gaaacaacaaaatgatgcacaagattttgatgaaggaagttcagatgatgaaaatgcaaagcaaagactgaggcacaagatgagtatacctaaggtatat |
10569360 |
T |
|
| Q |
225 |
gagcttatgcattcagttcatggcaaaataagaaaagtggagataattgagcttttgaatgacagtggatttggaggaatgttgcatatctgcaactgga |
324 |
Q |
| |
|
||||||||| | ||||| ||||||||| | || ||||||| | | |||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
10569359 |
gagcttatgaactcagtaaatggcaaaagacga--------gataattaacgtattgaatgacagtggctttggaggaatgttgcatatctggaactgga |
10569268 |
T |
|
| Q |
325 |
caaaagtccacactttctttgtggattgggttgttagaaactttgagaaagagcacatgtggattacattaagcaagaccgagatacttccattgaaaga |
424 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
10569267 |
atagagtccacactttctttgtggattaggttgttagaaactttgacaaagagaacatgtggattgcattaagcaagaccgaggtacttccattgaaaga |
10569168 |
T |
|
| Q |
425 |
ggatgatgtacatagggtgtatgagcttccaatgtcggggaagcagattaacg |
477 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
10569167 |
ggaagatgtacatagggtctatgagcttccaatggcggggaagcagattaacg |
10569115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 308 - 483
Target Start/End: Original strand, 42774133 - 42774308
Alignment:
| Q |
308 |
gcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaactttgagaaagagcacatgtggattacattaagcaagaccgag |
407 |
Q |
| |
|
||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||| | |||||| ||||||| ||| |||||||||||||||| |
|
|
| T |
42774133 |
gcatatctgcaactggaaaagaatccacactttctttgtggattgggttgttagaaactttcacaaagagaacatgtgcattgtattaagcaagaccgag |
42774232 |
T |
|
| Q |
408 |
atacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatgtcggggaagcagattaacgtcgatc |
483 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||||||| |||||| |||||| ||||||||||||||| |
|
|
| T |
42774233 |
gtgcttccattgaaagaggaaaatgtacatagggtgtatgagctcccaatggaagggaagaagattaacgtcgatc |
42774308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 141 - 274
Target Start/End: Original strand, 42773998 - 42774131
Alignment:
| Q |
141 |
gcacaagattctaatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgcattcag |
240 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
42773998 |
gcacaagattctgatgaaggaagttcaaatgatgaaaatgtcaagcaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgaattcag |
42774097 |
T |
|
| Q |
241 |
ttcatggcaaaataagaaaagtggagataattga |
274 |
Q |
| |
|
| ||||||||| ||||||| ||||||||||| |
|
|
| T |
42774098 |
taaatggcaaaagaagaaaacatgagataattga |
42774131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 6 - 61
Target Start/End: Complemental strand, 12284767 - 12284712
Alignment:
| Q |
6 |
gaggagtagcaaaggaatatcactgcttcatcatccggtggtgataaaaataagga |
61 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
12284767 |
gaggaggagcaaaggaatgtcactgctttatcatccggtggtgataaaaataagga |
12284712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 164; Significance: 2e-87; HSPs: 2)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 153 - 476
Target Start/End: Original strand, 5127 - 5450
Alignment:
| Q |
153 |
aatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaa |
252 |
Q |
| |
|
|||||||||||||| ||||| |||||||| || ||||||||||| || |||||||||||||||||||||||||| |||||| ||||||| ||||| ||| |
|
|
| T |
5127 |
aatgaaggaagttcagatgaggaaaatgcaaagcaaagactgagacataagatgagtatacctaaggtatatgatcttatgaattcagtacatggaaaac |
5226 |
T |
|
| Q |
253 |
taagaaaagtggagataattgagcttttgaatgacagtggatttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattg |
352 |
Q |
| |
|
|||||| | |||||| ||| | | |||||||| ||||| ||||| ||| || | |||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
5227 |
aaagaaaggaggagatcattaacttattgaatgaaagtggctttgggggattggttcatatctgcaactggaacagagtccacactttctttgtggattg |
5326 |
T |
|
| Q |
353 |
ggttgttagaaactttgagaaagagcacatgtggattacattaagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagctt |
452 |
Q |
| |
|
| | |||| ||||||||| |||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||| |
|
|
| T |
5327 |
gatagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagctt |
5426 |
T |
|
| Q |
453 |
ccaatgtcggggaagcagattaac |
476 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
5427 |
ccaatggcggggaagcagattaac |
5450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 9690 - 9612
Alignment:
| Q |
153 |
aatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagctta |
231 |
Q |
| |
|
|||||||||||||| ||||| |||||||| || ||||||||||| || |||| |||||||||||||||||||| |||| |
|
|
| T |
9690 |
aatgaaggaagttcagatgaggaaaatgcaaagcaaagactgagacataagactagtatacctaaggtatatgatctta |
9612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 160; Significance: 4e-85; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 153 - 476
Target Start/End: Complemental strand, 7685 - 7362
Alignment:
| Q |
153 |
aatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaa |
252 |
Q |
| |
|
|||||||||||||| ||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
7685 |
aatgaaggaagttcagatgaagaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaac |
7586 |
T |
|
| Q |
253 |
taagaaaagtggagataattgagcttttgaatgacagtggatttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattg |
352 |
Q |
| |
|
|||||| | |||||| ||| | | ||||| || ||||| ||||| |||||| | |||||||||||||||| | |||| ||||||||||||||||||| |
|
|
| T |
7585 |
aaagaaaggaggagatcattaacgtattgaacgaaagtggctttgggggaatggttcatatctgcaactggaacagagtctacactttctttgtggattg |
7486 |
T |
|
| Q |
353 |
ggttgttagaaactttgagaaagagcacatgtggattacattaagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagctt |
452 |
Q |
| |
|
| | |||| ||||||||| |||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||| |
|
|
| T |
7485 |
gatagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagctt |
7386 |
T |
|
| Q |
453 |
ccaatgtcggggaagcagattaac |
476 |
Q |
| |
|
|||||| |||||||||| |||||| |
|
|
| T |
7385 |
ccaatggcggggaagcatattaac |
7362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 160; Significance: 4e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 153 - 476
Target Start/End: Original strand, 17051465 - 17051788
Alignment:
| Q |
153 |
aatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaa |
252 |
Q |
| |
|
|||||||||||||| ||||| |||||||| || ||||||||||| || |||||||||||||||||||||||||| |||||| ||||||| ||||| ||| |
|
|
| T |
17051465 |
aatgaaggaagttcagatgaggaaaatgcaaagcaaagactgagacataagatgagtatacctaaggtatatgatcttatgaattcagtacatggaaaac |
17051564 |
T |
|
| Q |
253 |
taagaaaagtggagataattgagcttttgaatgacagtggatttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattg |
352 |
Q |
| |
|
|||||| | |||||| ||| | | |||||||| ||||| ||||| ||| || | |||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
17051565 |
aaagaaaggaggagatcattaacgtattgaatgaaagtggctttgggggattggttcatatctgcaactggaacagagtccacactttctttgtggattg |
17051664 |
T |
|
| Q |
353 |
ggttgttagaaactttgagaaagagcacatgtggattacattaagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagctt |
452 |
Q |
| |
|
| | |||| ||||||||| |||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||| |
|
|
| T |
17051665 |
gatagttaaaaactttgacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagctt |
17051764 |
T |
|
| Q |
453 |
ccaatgtcggggaagcagattaac |
476 |
Q |
| |
|
||||| ||||||||||||||||| |
|
|
| T |
17051765 |
ccaattgcggggaagcagattaac |
17051788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 153 - 476
Target Start/End: Complemental strand, 17230076 - 17229753
Alignment:
| Q |
153 |
aatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaa |
252 |
Q |
| |
|
|||||||||||||| |||| |||||||| || |||| |||||| || ||||||||||||| |||||||||||| |||||| ||||||| |||||||| |
|
|
| T |
17230076 |
aatgaaggaagttcatatgaggaaaatgcaaaccaaaaactgagacataagatgagtatacttaaggtatatgatcttatgaattcagtaaatggcaaac |
17229977 |
T |
|
| Q |
253 |
taagaaaagtggagataattgagcttttgaatgacagtggatttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattg |
352 |
Q |
| |
|
|||||| | |||||| ||| | | |||||||| ||||| ||||| |||||| | |||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
17229976 |
aaagaaaggaggagatcattaatgtattgaatgaaagtggctttgggggaatggttcatatctgcaactggaacagagtccacactttctttgtggattg |
17229877 |
T |
|
| Q |
353 |
ggttgttagaaactttgagaaagagcacatgtggattacattaagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagctt |
452 |
Q |
| |
|
| | |||| ||||||||| ||| | |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||| |
|
|
| T |
17229876 |
gatagttaaaaactttgacaaaaaaaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagctt |
17229777 |
T |
|
| Q |
453 |
ccaatgtcggggaagcagattaac |
476 |
Q |
| |
|
|||||| ||||||||||||||||| |
|
|
| T |
17229776 |
ccaatggcggggaagcagattaac |
17229753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 155; Significance: 4e-82; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 174 - 476
Target Start/End: Original strand, 19379 - 19681
Alignment:
| Q |
174 |
gaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagataattg |
273 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||| |||||| | |||||| ||| |
|
|
| T |
19379 |
gaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggaggagatcatta |
19478 |
T |
|
| Q |
274 |
agcttttgaatgacagtggatttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaactttgagaa |
373 |
Q |
| |
|
| | |||||||| ||||| ||||| |||||| | ||||||||||||| || | ||||||||||||||||||||||||| | |||| ||||||||| || |
|
|
| T |
19479 |
acgtattgaatgaaagtggctttgggggaatggttcatatctgcaactagaacagagtccacactttctttgtggattggatagttaaaaactttgacaa |
19578 |
T |
|
| Q |
374 |
agagcacatgtggattacattaagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatgtcggggaagcagatt |
473 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||||||| |||||||||||||| |
|
|
| T |
19579 |
agagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaatggcggggaagcagatt |
19678 |
T |
|
| Q |
474 |
aac |
476 |
Q |
| |
|
||| |
|
|
| T |
19679 |
aac |
19681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 169 - 476
Target Start/End: Complemental strand, 4224 - 3917
Alignment:
| Q |
169 |
atgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagat |
268 |
Q |
| |
|
|||| |||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||| |||||| | ||||| |
|
|
| T |
4224 |
atgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggatgagat |
4125 |
T |
|
| Q |
269 |
aattgagcttttgaatgacagtggatttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaacttt |
368 |
Q |
| |
|
||| | | |||||||| ||||| ||||| |||||| | |||||||| ||||||| | |||||| |||||||||||||||||| | |||| ||||||| |
|
|
| T |
4124 |
cattaacgtattgaatgaaagtggctttgggggaatggttcatatctggaactggagcagagtccatactttctttgtggattggatagttaaaaacttt |
4025 |
T |
|
| Q |
369 |
gagaaagagcacatgtggattacattaagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatgtcggggaagc |
468 |
Q |
| |
|
|| |||||| |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||| ||||||||||||||| |||||||| |
|
|
| T |
4024 |
gacaaagagaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagcttccaatggtggggaagc |
3925 |
T |
|
| Q |
469 |
agattaac |
476 |
Q |
| |
|
|||||||| |
|
|
| T |
3924 |
agattaac |
3917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 152 - 469
Target Start/End: Complemental strand, 19850391 - 19850074
Alignment:
| Q |
152 |
taatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaa |
251 |
Q |
| |
|
||||||||||||||| ||||| |||||||| || || |||||||||| |||||||||||| ||| ||||||||| |||||| ||||||| |||||||| |
|
|
| T |
19850391 |
taatgaaggaagttcagatgaggaaaatgcaaagtaacgactgaggcataagatgagtatatctatggtatatgatcttatgaattcagtaaatggcaaa |
19850292 |
T |
|
| Q |
252 |
ataagaaaagtggagataattgagcttttgaatgacagtggatttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggatt |
351 |
Q |
| |
|
|||||| | |||||| ||| | | |||||||| ||||| ||||| |||||| | |||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
19850291 |
caaagaaaggaggagatcattaacgtattgaatgaaagtggctttgggggaatggttcatatctgcaactggaacagagtccacactttctttgtggatt |
19850192 |
T |
|
| Q |
352 |
gggttgttagaaactttgagaaagagcacatgtggattacattaagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagct |
451 |
Q |
| |
|
|| | |||| ||||||||| ||| | |||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
19850191 |
ggatagttaaaaactttgacaaataaaacatgtggatagcattaagcaagaccgaggtacttccattgaaagaggaagatgtacatcgggtctatgagct |
19850092 |
T |
|
| Q |
452 |
tccaatgtcggggaagca |
469 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
19850091 |
tccaatggcggggaagca |
19850074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 193 - 472
Target Start/End: Complemental strand, 107838 - 107559
Alignment:
| Q |
193 |
tgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagataattgagcttttgaatgacagtgg |
292 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| || ||| | ||| | |||| |||| |||||||| |||||||| | ||||||||||| ||||| |
|
|
| T |
107838 |
tgaggcacaagcttagcatacctaaggtctatgacctaatgaagtcaatagatggaaaaagaagaaaagaccagataattcaacttttgaatgagagtgg |
107739 |
T |
|
| Q |
293 |
atttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaactttgagaaagagcacatgtggattaca |
392 |
Q |
| |
|
|||||||||||| | ||||| ||||| ||||||||| ||||||| ||||||||||| |||||||| ||| ||||||| || ||| | |||||||| | | |
|
|
| T |
107738 |
gtttggaggaatggttcatatatgcaaatggacaaaaatccacacattctttgtggaatgggttgtcagacactttgaaaaggagaatatgtggataaga |
107639 |
T |
|
| Q |
393 |
ttaagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatgtcggggaagcagat |
472 |
Q |
| |
|
| |||||||| || | || ||||||||||| || ||||| || || |||||| | || |||||| ||||| ||||||| |
|
|
| T |
107638 |
ctgagcaagacggatgtgctcccattgaaagaagaagatgtgcacagagtgtatcatctcccaatggcgggggagcagat |
107559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 193 - 472
Target Start/End: Original strand, 21157632 - 21157911
Alignment:
| Q |
193 |
tgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagataattgagcttttgaatgacagtgg |
292 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| |||||| | ||| | |||| |||| |||||||| |||||||| | ||||||||||| ||||| |
|
|
| T |
21157632 |
tgaggcacaagcttagcatacctaaggtctatgaccttatgaagtcaatagatggaaaaagaagaaaagaccagataattcaacttttgaatgagagtgg |
21157731 |
T |
|
| Q |
293 |
atttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaactttgagaaagagcacatgtggattaca |
392 |
Q |
| |
|
|||||||||||| | ||||| ||||| ||||||||| ||||||| ||||||||||| |||||||| | | ||||||| || ||| | |||||||| | | |
|
|
| T |
21157732 |
gtttggaggaatggttcatatatgcaaatggacaaaaatccacacattctttgtggaatgggttgtcaaacactttgaaaaggagaatatgtggataaga |
21157831 |
T |
|
| Q |
393 |
ttaagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatgtcggggaagcagat |
472 |
Q |
| |
|
| |||||||| || | || ||||||||||| || ||||| || || |||||| | || |||||| ||||| ||||||| |
|
|
| T |
21157832 |
ctgagcaagacggatgtgctcccattgaaagaagaagatgtgcacagagtgtatcatctcccaatggcgggggagcagat |
21157911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 193 - 472
Target Start/End: Original strand, 44342889 - 44343168
Alignment:
| Q |
193 |
tgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagataattgagcttttgaatgacagtgg |
292 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| |||||| | ||| | |||| |||| |||||||| |||||||| | ||||||||||| ||||| |
|
|
| T |
44342889 |
tgaggcacaagcttagcatacctaaggtctatgaccttatgaagtcaatagatggaaaaagaagaaaagaccagataattcaacttttgaatgagagtgg |
44342988 |
T |
|
| Q |
293 |
atttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaactttgagaaagagcacatgtggattaca |
392 |
Q |
| |
|
|||||||||||| | ||||| ||||| ||||||||| ||||||| ||||||||||| || ||||| ||| ||||||| || ||| | |||||||| | | |
|
|
| T |
44342989 |
gtttggaggaatggttcatatatgcaaatggacaaaaatccacacattctttgtggaatgagttgtcagacactttgaaaaggagaatatgtggataaga |
44343088 |
T |
|
| Q |
393 |
ttaagcaagaccgagatacttccattgaaagaggatgatgtacatagggtgtatgagcttccaatgtcggggaagcagat |
472 |
Q |
| |
|
| ||||||| || | || ||||||||||| || ||||| ||||| |||||| | | |||||| ||||| ||||||| |
|
|
| T |
44343089 |
ctgagcaagatggatgtgctcccattgaaagaagaagatgtgcatagagtgtatcatttcccaatggcgggggagcagat |
44343168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 153 - 231
Target Start/End: Complemental strand, 28050435 - 28050357
Alignment:
| Q |
153 |
aatgaaggaagttcggatgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagctta |
231 |
Q |
| |
|
|||||||||||||| ||||| |||||||| || ||||||||||| || |||| |||||||||||||||||||| |||| |
|
|
| T |
28050435 |
aatgaaggaagttcagatgaggaaaatgcaaagcaaagactgagacataagactagtatacctaaggtatatgatctta |
28050357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 193 - 388
Target Start/End: Original strand, 14621 - 14816
Alignment:
| Q |
193 |
tgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagataattgagcttttgaatgacagtgg |
292 |
Q |
| |
|
||||||||||| | || ||||||||||| ||||| |||||| | ||| | |||| |||| |||||||| |||||||| | ||||||||||| ||||| |
|
|
| T |
14621 |
tgaggcacaagcttagcatacctaaggtctatgaccttatgaagtcaatagatggaaaaagaagaaaagaccagataattcaacttttgaatgagagtgg |
14720 |
T |
|
| Q |
293 |
atttggaggaatgttgcatatctgcaactggacaaaagtccacactttctttgtggattgggttgttagaaactttgagaaagagcacatgtggat |
388 |
Q |
| |
|
|||||||||||| | ||||| ||||| ||||||||| ||||||| ||||||||||| |||||||| | | ||||||| || ||| | |||||||| |
|
|
| T |
14721 |
gtttggaggaatggttcatatatgcaaatggacaaaaatccacacattctttgtggaatgggttgtcaaacactttgaaaaggagaatatgtggat |
14816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 22454 - 22559
Alignment:
| Q |
7 |
aggagtagcaaaggaatatcactgcttcatcatccggtggtgataaaaataaggagcggaaaacaggagaggctaaagataaagaaaagaagcaatacat |
106 |
Q |
| |
|
||||| ||||||||||| ||||| |||||||||| |||| ||||||||||||||||| ||||| |||||||||||||| |||||||||||||| |||| |
|
|
| T |
22454 |
aggaggagcaaaggaatgtcactacttcatcatctggtgatgataaaaataaggagcagaaaataggagaggctaaagggaaagaaaagaagcagcacat |
22553 |
T |
|
| Q |
107 |
aaagaa |
112 |
Q |
| |
|
|||||| |
|
|
| T |
22554 |
aaagaa |
22559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 169 - 305
Target Start/End: Original strand, 30407466 - 30407602
Alignment:
| Q |
169 |
atgatgaaaatgcgaaacaaagactgaggcacaagatgagtatacctaaggtatatgagcttatgcattcagttcatggcaaaataagaaaagtggagat |
268 |
Q |
| |
|
|||| |||||||| || |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| |||||||| |||||| | ||||| |
|
|
| T |
30407466 |
atgaggaaaatgcaaagcaaagactgaggcataagatgagtatacctaaggtatatgatcttatgaattcagtaaatggcaaacaaagaaaggatgagat |
30407565 |
T |
|
| Q |
269 |
aattgagcttttgaatgacagtggatttggaggaatg |
305 |
Q |
| |
|
||| | | |||||||| ||||| ||||| |||||| |
|
|
| T |
30407566 |
cattaacgtattgaatgaaagtggctttgggggaatg |
30407602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University