View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_24 (Length: 478)
Name: NF14353_low_24
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_24 |
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| [»] scaffold2107 (1 HSPs) |
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| [»] scaffold0129 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 411; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 13473848 - 13473385
Alignment:
| Q |
1 |
agtagctatacacccgatgatattgcactctgtattctttctaaacttcctgtcaaatctgttaagcggtttacatgcgttcgcaaaccatggtcacttt |
100 |
Q |
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|||||||||| |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13473848 |
agtagctatatacccgatgatattgtact--gtattctctctaaacttcctgtcaaatctgttaagcggtttacatgcgttcgtaaaccatggtcacttt |
13473751 |
T |
|
| Q |
101 |
tgtttggcaatcctactttcctaaccatgttccgcaacaatttggtttccaaatcccattcattgtatgatgacgacgacgatgatgatgtgtgtctcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13473750 |
tgtttggcaatcctactttcctaaccatgttccgcaacaatttggtttccaaatcccattcattgtatgatgacgacgacgacgatgatgtgtgtctcat |
13473651 |
T |
|
| Q |
201 |
cttcaatatgtttttggttccgagtatgttgtatatgctttcaggtgagaggtttgagaataaggttagattagatccaccaccgccatatgatcatcta |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13473650 |
cttcaatatgtttttggtttcgagtatgttgtatatgctttcaggtgagaggtttgagaataaggttagattagatccaccaccgccatatgatcatcta |
13473551 |
T |
|
| Q |
301 |
ccaagtgataattttcttcctcatattttaggttctgctattaatggcattatttgtttctataattgtctcgatcatagaaatgtagtattatggaacc |
400 |
Q |
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|||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13473550 |
ccaagtgacaattttcttcttcatattttaggttctgctattaatggcattatttgtttctataattgtctcgatcatagaaatgtagtattatggaacc |
13473451 |
T |
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| Q |
401 |
cggctactaaggaaattaaggtcgtttaccctagccttaatgagtgtctatctaatgtcactaatg |
466 |
Q |
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| T |
13473450 |
cggctactaaggaaattaaggtcgtttctcctagccttaacgagtgtctatctaatgtcactaatg |
13473385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 9763467 - 9763572
Alignment:
| Q |
1 |
agtagctatacacccgatgatattgcactctgtattctttctaaacttcctgtcaaatctgttaagcggtttacatgcgttcgcaaaccatggtcacttt |
100 |
Q |
| |
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|||||||||| ||| ||||| ||||| |||||||||| |||||||||||||| ||||||||||||| ||| | || ||||||||| ||||||| |||| |
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| T |
9763467 |
agtagctatataccagatgacattgctttctgtattctctctaaacttcctgttaaatctgttaagcatttttcttgtgttcgcaaatcatggtctcttt |
9763566 |
T |
|
| Q |
101 |
tgtttg |
106 |
Q |
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|||||| |
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| T |
9763567 |
tgtttg |
9763572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 7 - 181
Target Start/End: Original strand, 13280256 - 13280430
Alignment:
| Q |
7 |
tatacacccgatgatattgcactctgtattctttctaaacttcctgtcaaatctgttaagcggtttacatgcgttcgcaaaccatggtcacttttgtttg |
106 |
Q |
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|||| |||||||||||||| ||| |||||| |||||||| ||| | ||| | |||| || ||| | || ||||||||| ||||||| | ||| |||| |
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| T |
13280256 |
tatatacccgatgatattgttttctctattctctctaaactccctattaaacatcttaaacgctttgcttgtgttcgcaaatcatggtctcatttatttg |
13280355 |
T |
|
| Q |
107 |
gcaatcctactttcctaaccatgttccgcaacaatttggtttccaaatcccattcattgtatgatgacgacgacg |
181 |
Q |
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|| |||| |||| | | |||||||||||||||| | ||||||||||| || || ||||||||| ||||||| |
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| T |
13280356 |
aaaaccctattttcatgaacatgttccgcaacaatcttgtttccaaatctcaaacagggtatgatgatgacgacg |
13280430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2107 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold2107
Description:
Target: scaffold2107; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Complemental strand, 140 - 55
Alignment:
| Q |
16 |
gatgatattgcactctgtattctttctaaacttcctgtcaaatctgttaagcggtttacatgcgttcgcaaaccatggtcactttt |
101 |
Q |
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|||||||||||| | ||||||| |||||||| ||| |||| ||| | ||||| ||||| |||||||| ||| ||||||| ||||| |
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| T |
140 |
gatgatattgcatttggtattctctctaaactccctatcaagtctctcaagcgatttacttgcgttcgtaaatcatggtctctttt |
55 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 263
Target Start/End: Original strand, 9764 - 9801
Alignment:
| Q |
226 |
atgttgtatatgctttcaggtgagaggtttgagaataa |
263 |
Q |
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||||||||| ||||||| |||||||||||||||||||| |
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| T |
9764 |
atgttgtatttgctttctggtgagaggtttgagaataa |
9801 |
T |
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