View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_26 (Length: 456)
Name: NF14353_low_26
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 403; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 16 - 446
Target Start/End: Complemental strand, 10288537 - 10288107
Alignment:
| Q |
16 |
cataaccaatcttttacaaggcatttacattttatgatttagagggccgcaaatcgttgcacaatgattaggttggtgtcctgtgatctagaagtcacat |
115 |
Q |
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| T |
10288537 |
cataaccaatcttttacaaggcatttacattttatgatttagagggccgcaagtcgttgcacaatgattaggttggtgtcctgtgatctagaagtcacat |
10288438 |
T |
|
| Q |
116 |
gtccaaatcataaaaacaacttatctgcttgcagagataagacagtgtacatttacttttaaatactccacatggtggaagcctcatgcactaggctgtc |
215 |
Q |
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| T |
10288437 |
gtccaaatcataaaaacaacttatccgcttgcagagataagacagtgtacatttacttttaaatactccacatggtggaagcctcatgcactaggctgtc |
10288338 |
T |
|
| Q |
216 |
ctttatcgacattctatgatacatctttcaatcatatgattttgggtttggggacctggaggaccctgaaaatatatcacctctatggtgtgcactattt |
315 |
Q |
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| T |
10288337 |
ctttatcgacattctatgatacatctttcaatcatatgattttgggtttggggacctggaggaccctggaaatatatcacctctatggtgtgcacttttt |
10288238 |
T |
|
| Q |
316 |
tcctgaataataagcggttcagagatcccagagacatgagaagtaattccaacaattgcccgcctttctttataagatgtccaggtaacagtatacagac |
415 |
Q |
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| T |
10288237 |
tcctgaataataagtggttcagaggtcccagagacatgagaagtaattccaacaattgcccgcctttctttataagatgtccaggtaacagtatacagac |
10288138 |
T |
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| Q |
416 |
cagcaatgatcaaacacccccctatgctact |
446 |
Q |
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| T |
10288137 |
cagcaatgatcaaacacccccctatgatact |
10288107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 283 - 440
Target Start/End: Complemental strand, 10296826 - 10296669
Alignment:
| Q |
283 |
gaaaatatatcacctctatggtgtgcactattttcctgaataataagcggttcagagatcccagagacatgagaagtaattccaacaattgcccgccttt |
382 |
Q |
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|||||||||| |||||||||||||| ||| ||||| ||||||||||| ||||||||||||| |||| | ||||||||| |||||||| ||||| | |||| |
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| T |
10296826 |
gaaaatatattacctctatggtgtgaacttttttcatgaataataagtggttcagagatccaagagtcgtgagaagtagttccaacagttgcctgtcttt |
10296727 |
T |
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| Q |
383 |
ctttataagatgtccaggtaacagtatacagaccagcaatgatcaaacacccccctat |
440 |
Q |
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|||| |||||| ||||||||||||||| || ||| ||||||||||| |||||||||| |
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| T |
10296726 |
gtttaaaagatgcccaggtaacagtataaagtccaacaatgatcaaagacccccctat |
10296669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 271 - 446
Target Start/End: Complemental strand, 10304218 - 10304046
Alignment:
| Q |
271 |
ctggaggaccctgaaaatatatcacctctatggtgtgcactattttcctgaataataagcggttcagagatcccagagacatgagaagtaattccaacaa |
370 |
Q |
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| T |
10304218 |
ctggaggaccccggaaatatatgatctctttggtgtgcacttttttcatgaataa---gtggttcagaaacccaagagtcatgagaagaaatttcaagag |
10304122 |
T |
|
| Q |
371 |
ttgcccgcctttctttataagatgtccaggtaacagtatacagaccagcaatgatcaaacacccccctatgctact |
446 |
Q |
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| T |
10304121 |
ttgcctgtctttctttataagatgcccaggtaacaccaaagagaccagcaatgatcaaagacccccctatgatact |
10304046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 72 - 175
Target Start/End: Complemental strand, 10297004 - 10296901
Alignment:
| Q |
72 |
ttgcacaatgattaggttggtgtcctgtgatctagaagtcacatgtccaaatcataaaaacaacttatctgcttgcagagataagacagtgtacatttac |
171 |
Q |
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||||||||| || ||||||||||| |||||||||||||||||| | ||||| ||||||||||| | |||||||| ||||||||||| ||| |||||||| |
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| T |
10297004 |
ttgcacaattataaggttggtgtcttgtgatctagaagtcacacattcaaattataaaaacaacctctctgcttgtagagataagaccgtgcacatttac |
10296905 |
T |
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| Q |
172 |
tttt |
175 |
Q |
| |
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|||| |
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|
| T |
10296904 |
tttt |
10296901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 324 - 446
Target Start/End: Original strand, 10278408 - 10278530
Alignment:
| Q |
324 |
aataagcggttcagagatcccagagacatgagaagtaattccaacaattgcccgcctttctttataagatgtccaggtaacagtatacagaccagcaatg |
423 |
Q |
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||||||||| ||||||| || |||| | || ||||||||| |||||||| || | ||||||||||||||| ||| |||||| | || |||||||| ||| |
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| T |
10278408 |
aataagcggctcagagaaccaagagtcgtgggaagtaatttcaacaattccctgtttttctttataagatgcccatgtaacaatgtaaagaccagctatg |
10278507 |
T |
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| Q |
424 |
atcaaacacccccctatgctact |
446 |
Q |
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|||||| | ||||||||| |||| |
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| T |
10278508 |
atcaaagatccccctatgatact |
10278530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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