View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_27 (Length: 454)
Name: NF14353_low_27
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_27 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 430; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 8058638 - 8058185
Alignment:
| Q |
1 |
ctgttgtagatgacattgatgatggttaatctctctttcatatttcttatcaacaattattgtaatgagagaattatcaacttcatttccattaataccc |
100 |
Q |
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| T |
8058638 |
ctgttgtagatgacattgatgatggttaacctctctttcatatttcttatcaacaattattgtaatgagagaattatcaacttcatttccattaataccc |
8058539 |
T |
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| Q |
101 |
ttgttgtcatcttgcatttttcttctaagtttctcctctgcttcttgtaagaacttgaatttcggaggaggcgatgactttaatctattgaactctgcat |
200 |
Q |
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| T |
8058538 |
ttgttgtcatcttgcatttttcttctaagtttctcttctgcttcttgtaagaacttgaatttcggaggaggcgatgactttaatctattgaactctgcat |
8058439 |
T |
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| Q |
201 |
cagttgttgattcaaaaagagggttgaatccatgttgattataagggctacaataaggactacaattcataggagtgaaaaaatgtggagatgctatagg |
300 |
Q |
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| T |
8058438 |
cagttgttgattcaaaaagagggttgaatccatgttgattataagggctacaataaggactacaattcataggagtgaaaaaatgtggagatgctatagg |
8058339 |
T |
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| Q |
301 |
tgtcaaataaggtgtttccacatctaacaaatcacctaagcttctacctcttgaatcctttccacatttaccatcttcggattctaaatcctcttttgat |
400 |
Q |
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| T |
8058338 |
tgtcaaataaggtgtttccacatctaacagatcacctaagcttctacctcttgaatcctttccacatttaccgtcttcagattctaaatcctcttttgat |
8058239 |
T |
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| Q |
401 |
tcttcaactatcgtgaacaagaatctcggatgacctaaaaggccgtcgtgatga |
454 |
Q |
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| T |
8058238 |
tcttcaactattgtgaacaagaatctcggatgacctaaaaggccgtcgtgatga |
8058185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 24777045 - 24777145
Alignment:
| Q |
36 |
tttcatatttcttatcaacaattattgtaatgagagaatt-atcaacttcatttccattaatacccttgttgtcatcttgcatttttcttctaagtttct |
134 |
Q |
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| T |
24777045 |
tttcatatttctaatcaacaactattgtaatgagagaaatcatcaactttattttcattaatacccttgttgttatcttgcaaatttcttctaagcttct |
24777144 |
T |
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| Q |
135 |
c |
135 |
Q |
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| T |
24777145 |
c |
24777145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 129 - 216
Target Start/End: Original strand, 24777239 - 24777325
Alignment:
| Q |
129 |
gtttctcctctgcttcttgtaagaacttgaatttcggaggaggcgatgactttaatctattgaactctgcatcagttgttgattcaaa |
216 |
Q |
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| T |
24777239 |
gtttctcttttgcttcttgtaagaacttgaattttggag-aggtgatgactttaatctatggaactctgcatcagttgtcgattcaaa |
24777325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 295 - 364
Target Start/End: Original strand, 10429040 - 10429109
Alignment:
| Q |
295 |
tataggtgtcaaataaggtgtttccacatctaacaaatcacctaagcttctacctcttgaatcctttcca |
364 |
Q |
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| T |
10429040 |
tataagtgtcaaataaggtgttttcaaatctaacaaataacctaagcttctacctattgaatcctttcca |
10429109 |
T |
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