View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_28 (Length: 445)
Name: NF14353_low_28
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 49004416 - 49004844
Alignment:
| Q |
1 |
tgtacaggaggaaggatttgagactaaccaagttgggtctgaagaaatggagctcaatatttctcttgttcttgagaagattgagaattttacccagagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
49004416 |
tgtacaggaggaaggatttgagactaaccaagttgggtctgaagaaatggagctgaatatttctcttgttcttgagaagattgagaattttactcagagg |
49004515 |
T |
|
| Q |
101 |
gtagctatataaagttacacttacacgctgtttgaaacttgaaatcatactctagatgaatgttaaatctttgaaatgtttaattgtggatttcgtgtag |
200 |
Q |
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|||||||||||| ||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49004516 |
gtagctatataatgttacacttacacactgtttgaagcttgaaatcataagctagatgaatgttaaatctttgaaatgtttaattgtggatttcttgtag |
49004615 |
T |
|
| Q |
201 |
gtatctgagctcttggaatcagggaaaacaatgtttaaggagctatgcaatgaatttgaagagaaactgattatgtgagtaatgaagttaccattgaaca |
300 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49004616 |
gtatctgagcttttggaatcagggaaaacaatgcttaaggagctatgcaatgaatttgaagagaaactgattatgtgagttatgaagttaccattgaaca |
49004715 |
T |
|
| Q |
301 |
ttcaatgtttaaactatctttcac-ttaaatattgttagtttttgactttttatggtgtgattcttttaactttcaaataagcaggattcacaaggagca |
399 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49004716 |
ttcaatgtttaaactatctttcactttaaatattgttagtttttgactttttatggtgtgattcttttaactttcaaataagcaggattcacaaggagca |
49004815 |
T |
|
| Q |
400 |
ggttgaaaaatggcaggaagaaatcaaag |
428 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
49004816 |
ggttgaaaaatggcaggaagaaatcaaag |
49004844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 38160439 - 38160867
Alignment:
| Q |
1 |
tgtacaggaggaaggatttgagactaaccaagttgggtctgaagaaatggagctcaatatttctcttgttcttgagaagattgagaattttacccagagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| |||||| |
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| T |
38160439 |
tgtacaggaggaaggatttgagactaaccaaattgggtctgaggaaatggaactcaatgtttctcttgttcttgagaagattgagaattttactcagagg |
38160538 |
T |
|
| Q |
101 |
gtagctatataaagttacacttacacgctgtttgaaacttgaaatcatactctagatgaatgttaaatctttgaaatgtttaattgtggatttcgtgtag |
200 |
Q |
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|||||||||||||||||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38160539 |
gtagctatataaagttacacctacacactgtttgaagcttgaaatcatactgtagatgaatgttaaatctttgaaatgtttaattgtggatttcttgtag |
38160638 |
T |
|
| Q |
201 |
gtatctgagctcttggaatcagggaaaacaatgtttaaggagctatgcaatgaatttgaagagaaactgattatgtgagtaatgaagttaccattgaaca |
300 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
38160639 |
gtatctgagctcttggaatcagggaaaacaatgcttaaggagctatgcaatgaatttgaagagaaactgattatgcgagttatgaagttaccattgaaca |
38160738 |
T |
|
| Q |
301 |
ttcaatgtttaaactatctttcac-ttaaatattgttagtttttgactttttatggtgtgattcttttaactttcaaataagcaggattcacaaggagca |
399 |
Q |
| |
|
||||| | | |||||||||||||| || |||||||||||||||||||||||| |||||| ||||||||||||||| |||| ||||||||||||||||||| |
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| T |
38160739 |
ttcaaagctgaaactatctttcacttttaatattgttagtttttgactttttgtggtgttattcttttaactttccaatatgcaggattcacaaggagca |
38160838 |
T |
|
| Q |
400 |
ggttgaaaaatggcaggaagaaatcaaag |
428 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
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|
| T |
38160839 |
ggtcgaaaaatggcaggaagaaatcaaag |
38160867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 154 - 428
Target Start/End: Original strand, 38116767 - 38117041
Alignment:
| Q |
154 |
agatgaatgttaaatctttgaaatgtttaattgtggatttcgtgtaggtatctgagctcttggaatcagggaaaacaatgtttaaggagctatgcaatga |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116767 |
agatgaatgttaaatctttgaaatgtttaattgtggatttcatgtaggtatctgagctcttggaatcagggaaaacaatgtttaaggagctatgcaatga |
38116866 |
T |
|
| Q |
254 |
atttgaagagaaactgattatgtgagtaatgaagttaccattgaacattcaatgtttaaactatctttcacttaaatattgttagtttttgactttttat |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116867 |
atttgaagagaaactgattatgtgagtaatgaagttaccattgaacattcaatgtttaaactatctttcacttaaatattgttagtttttgactttttat |
38116966 |
T |
|
| Q |
354 |
ggtgtgattcttttaactttcaaataagcaggattcacaaggagcaggttgaaaaatggcaggaagaaatcaaag |
428 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116967 |
ggtgtgattcttttaactttcaaataagcaggattcacaaggagcaggttgaaaaatggcaggaagaaatcaaag |
38117041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 38116635 - 38116760
Alignment:
| Q |
1 |
tgtacaggaggaaggatttgagactaaccaagttgggtctgaagaaatggagctcaatatttctcttgttcttgagaagattgagaattttacccagagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38116635 |
tgtacaggaggaaggatttgagactaaccaagttgggtctgaagaaatggagctcaatatttctcttgttcttgagaagattgagaattttacccagagg |
38116734 |
T |
|
| Q |
101 |
gtagctatataaagttacacttacac |
126 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
38116735 |
gtagctatataaagttacacttacac |
38116760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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