View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_3 (Length: 812)
Name: NF14353_low_3
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 682; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 15 - 796
Target Start/End: Complemental strand, 47292922 - 47292143
Alignment:
| Q |
15 |
ttattcttaagtgactttgtatttgattatcagattcaaaatcagtatcagaactaaatccatacttcagtaaaataagacaaggatagaagtagataca |
114 |
Q |
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| T |
47292922 |
ttattcttaagtgactttgtatttgattatcagattcaaaatcagtatcagaactaaatccatacttcagtaaaataagacaaggatagaagcagataca |
47292823 |
T |
|
| Q |
115 |
agcaaatatcaagcctgacacggtcttttaaatattaatacggttctatttccatttcacccagaaaacaagcatagattgttgattgaagcgccaataa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292822 |
agcaaatatcaagcctgacacggtcttttaaatattaatacggttctatttccatttcacccagaaaacaagcatagattgttgattgaagcgccaataa |
47292723 |
T |
|
| Q |
215 |
gcatcttaaaaatattaatatttgattttcagattaaaatcattctgctagttaatctatctgcagagaaaataaaacatacgaaaaatttattttcctt |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47292722 |
gcatcttaaaaatattaatatttgattttcagattaaaatcattctgctagttaatctatctgcagagaaaataaaacatacgaaaaatttattttcctt |
47292623 |
T |
|
| Q |
315 |
tcctaatcacttaagtcattgagttgtaaaaaaa-tctaacaagatnnnnnnnnnnnnnnnnnnnctttaaaccatgacataagttgctttagagttcag |
413 |
Q |
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| T |
47292622 |
tcctaatcact-aagtcattgagttgtaaaaaaaatctaacaaga--ataaaaaaaaaaaaaaaactttattccatggcataagttgctttagagttcag |
47292526 |
T |
|
| Q |
414 |
agatctaacaattaacagttacggaaatgaagagacatcatgatcaactcacctcaagaacaggcccaaccttaaaggaccccatgatacgctctttgga |
513 |
Q |
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| T |
47292525 |
agatctaacaattaacagttacggaaatgaagaaacatcatgatcaactcacctcaagaacaggcccaaccttaaaggaccccatgatacgctctttgga |
47292426 |
T |
|
| Q |
514 |
gactaatgtgaggaggggaatcaatgcaaagggaatttgtatggactgaagcacattgagccattcattcaaaacatccaatgaggcttctgacctgtta |
613 |
Q |
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| T |
47292425 |
gactaatgtgaggaggggaatcaatgcaaagggaatttgtatggactgaagcacattgagccattcattcaaaacatccaatgaggcttctgacctgtta |
47292326 |
T |
|
| Q |
614 |
taaacaatagctacaattatagttggcacaattgcacaactccgagtgatcaatgctctcaaccatttctttaatcgaaggtttaggaaaccccccatta |
713 |
Q |
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| T |
47292325 |
taaacaatagctacaattatagttggcacaattgcacaactccgagtgatcaatgctctcaaccatttctttaatcgaaggtttaggaaaccccccatta |
47292226 |
T |
|
| Q |
714 |
tgaattgcccagcatatgtgccagtgatagtgctactttgtccggccgccagtaacccaattccccatatataaagaataggg |
796 |
Q |
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| T |
47292225 |
tgaattgcccagcatatgtgccagtgatagtgctactttgtccggccgccagtaacccaattccccatatataaagaataggg |
47292143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 19 - 259
Target Start/End: Complemental strand, 47293306 - 47293058
Alignment:
| Q |
19 |
tcttaagtgactttgtatttgattatcagattcaaaatcagtatcaga---actaaatccat----acttcagtaaaataagacaaggatagaagtagat |
111 |
Q |
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||||||||||||| |||||| |||||| || ||||||||||||| ||| ||||||| ||| |||| |||| || |||||||||||||||| | || |
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| T |
47293306 |
tcttaagtgacttggtattttattatcggactcaaaatcagtattagatgaactaaatgcatctaaacttgagtagaacaagacaaggatagaagcatat |
47293207 |
T |
|
| Q |
112 |
acaagcaaatatcaagcctgacacggtcttttaaat-attaatacggttctatttccatttcacccagaaaacaagcatagattgttgattgaagcgcca |
210 |
Q |
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| T |
47293206 |
acagacaaatatcaagcttgacgcagtcttttaaaacattgctacggttctatttccattttacctagaaaacaagcatagattg-taattgaatattga |
47293108 |
T |
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| Q |
211 |
ataagcatcttaaaa-atattaatatttgattttcagattaaaatcattc |
259 |
Q |
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| T |
47293107 |
atatgcatcttaaaataacttgatatttgattatcagattaaaatcattc |
47293058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 9e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 538 - 686
Target Start/End: Complemental strand, 10389589 - 10389441
Alignment:
| Q |
538 |
tgcaaagggaatttgtatggactgaagcacattgagccattcattcaaaacatccaatgaggcttctgacctgttataaacaatagctacaattatagtt |
637 |
Q |
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|||||| ||||||||||| | ||||||||||| ||||||||||||||| ||||||||| ||||||| | ||| ||||||| |||||||| |||||| |
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| T |
10389589 |
tgcaaaaggaatttgtattgcttgaagcacattaagccattcattcaaagtatccaatgaaccttctgaagtattaaaaacaattgctacaatcatagtt |
10389490 |
T |
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| Q |
638 |
ggcacaattgcacaactccgagtgatcaatgctctcaaccatttcttta |
686 |
Q |
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| T |
10389489 |
ggaacaatagcacaacttctagtgatcaatgcccttaaccattttttta |
10389441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 701 - 786
Target Start/End: Original strand, 5803430 - 5803515
Alignment:
| Q |
701 |
aaaccccccattatgaattgcccagcatatgtgccagtgatagtgctactttgtccggccgccagtaacccaattccccatatata |
786 |
Q |
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| T |
5803430 |
aaaccacccatgatgaattgtccagcatatgtaccagtaatagtgctactttgaccagctgctaataacccaataccccatatata |
5803515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 529 - 597
Target Start/End: Original strand, 5803258 - 5803326
Alignment:
| Q |
529 |
gggaatcaatgcaaagggaatttgtatggactgaagcacattgagccattcattcaaaacatccaatga |
597 |
Q |
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| T |
5803258 |
gggaatcaatgcgaaagggatttgcactgactgaagaacattaagccattcattcaaaacatctaatga |
5803326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 635 - 786
Target Start/End: Complemental strand, 39674167 - 39674016
Alignment:
| Q |
635 |
gttggcacaattgcacaactccgagtgatcaatgctctcaaccatttctttaatcgaaggtttaggaaaccccccattatgaattgcccagcatatgtgc |
734 |
Q |
| |
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||||| || |||||| |||| ||||| |||||||| |||| ||||||||| || | | ||||| || || ||||| || ||||| |||||||| || | |
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| T |
39674167 |
gttgggactattgcaaaactacgagtaatcaatgccctcatccatttcttcaaccttaaatttagaaagcctcccatgataaattgtccagcataagtac |
39674068 |
T |
|
| Q |
735 |
cagtgatagtgctactttgtccggccgccagtaacccaattccccatatata |
786 |
Q |
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| T |
39674067 |
cagttatagtgctactttgaccagctgctaacaacccaataccccatatata |
39674016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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