View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_30 (Length: 434)
Name: NF14353_low_30
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Original strand, 25309030 - 25309448
Alignment:
| Q |
13 |
aatatattaactaagtttctaattatgctcttgtttgtaatcaattcaatcaccaccaaatggaatgttttgtattcttctaaagatgggtaaactgtat |
112 |
Q |
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| T |
25309030 |
aatatattaactatgtttctaattatgctcttgtttgtaatcaattcaaccaccaccatatggaatgttttatattcttctaaagatgagtgaactgtat |
25309129 |
T |
|
| Q |
113 |
agtttaaatataagttgttcattaattaggacattttgagtaacaaatggttatttctcgatagaaatgagtatgatcagtgattcttttaagacctgca |
212 |
Q |
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| T |
25309130 |
agtttaaatataagttgttcattaattaggacattttgagtaacaaatggttatttctcgatagaaatgagtatgatcagtgattcttttaagacctgca |
25309229 |
T |
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| Q |
213 |
catcaccttcaacggagaaaaatgtacgaggcagaaggagtgtttattttgtttctgctttcttttctgtatgtctagctgtatgctccctttgtgtcat |
312 |
Q |
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| T |
25309230 |
catcaccttcaacggagaaaaatgtacgaggcagaaggagtgtttattttgtttctgctttattttctatatgtctagctgtataccccctttgtgtcat |
25309329 |
T |
|
| Q |
313 |
ta-ttttcatttaagctaatgtgtacacaataagacaattatcaatattactgattcgcattgtaaaataactatttttggttagtgttgtcgttaaata |
411 |
Q |
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|| ||||||||||| |||||||||||||||||||| |||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25309330 |
tatttttcatttaatctaatgtgtacacaataagaaaattattaatattactgattcacatcgtaaaataactatttttggttagtgttgtcgttaaata |
25309429 |
T |
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| Q |
412 |
gaataaaaggattataact |
430 |
Q |
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||||||||||||||||||| |
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| T |
25309430 |
gaataaaaggattataact |
25309448 |
T |
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