View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14353_low_31 (Length: 430)
Name: NF14353_low_31
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_31 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 9)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 414
Target Start/End: Original strand, 51035421 - 51035819
Alignment:
| Q |
1 |
aagaggcctccttgaagcctaaccattttgctaccacagagtttactccatcacacccaatcaataccttttccacaaattgcaaacaataattatttta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51035421 |
aagaggcctccttgaagcctaaccattttgctaccacagagtttactccatcacacccaatcaataccttttccacaaattgcaaacaataattatttta |
51035520 |
T |
|
| Q |
101 |
attagaccaacaacttgaactctcaatggaagtttttctcttcatatataatgtcttacatattttgttgtttaattaccttagttttgatggttgttcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51035521 |
attagaccaacaacttgaactctcaatggaagtt---------------aatgtcttacatattttgttgtttaattaccttagttttgatggttgttcc |
51035605 |
T |
|
| Q |
201 |
atcagcaagatggattatcttagacaagccagattcttgaatagcaacaacctttgacatgtatctaatggtgccactaggaagttcattggcaagggct |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51035606 |
atcagcaagatggagtatcttagacaagccagattcttgaatagcaacaacctttgacatgtatctaatggtgccactaggaagttcattggcaagggct |
51035705 |
T |
|
| Q |
301 |
tccaacaataatttccttcgaacttcacaggctcctccactgcatggcataaaaacacacatcatagaaagaattagaataatggaattgtaacaattta |
400 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51035706 |
tccaacaataatttccttcgaacttcataggctcctccactgcatggcataaaaacacacatcatagaaagaattagaataatggaattgtaacaattta |
51035805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 51031182 - 51031330
Alignment:
| Q |
3 |
gaggcctccttgaagcctaaccattttgctaccacagagtttactccatcacacccaatcaataccttttccacaaattgcaaacaataattattttaat |
102 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51031182 |
gaggcttccttgaaccctaaccattttgccaccacagagtttactccatcacacccaatcaataccttttccacaaattgcaaacaataattattttaat |
51031281 |
T |
|
| Q |
103 |
tagaccaacaacttgaactctcaatggaagtttttctcttcatatataa |
151 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
51031282 |
tagactaacaacttgaactctcaaaggaagtttttatcttcatatataa |
51031330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 3 - 151
Target Start/End: Original strand, 51063934 - 51064082
Alignment:
| Q |
3 |
gaggcctccttgaagcctaaccattttgctaccacagagtttactccatcacacccaatcaataccttttccacaaattgcaaacaataattattttaat |
102 |
Q |
| |
|
||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51063934 |
gaggcttccttgaaccctaaccattttgccaccacagagtttactccatcacacccaatcaataccttttccacaaattgcaaacaataattattttaat |
51064033 |
T |
|
| Q |
103 |
tagaccaacaacttgaactctcaatggaagtttttctcttcatatataa |
151 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
51064034 |
tagactaacaacttgaactctcaaaggaagtttttatcttcatatataa |
51064082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 167 - 318
Target Start/End: Original strand, 51031381 - 51031532
Alignment:
| Q |
167 |
gttgtttaattaccttagttttgatggttgttccatcagcaagatggattatcttagacaagccagattcttgaatagcaacaacctttgacatgtatct |
266 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||| | ||| || || || |||||||| | |||||||||||||||||||||||| || |
|
|
| T |
51031381 |
gttgtttaattaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcctcaatagcaacaacctttgacatgtacct |
51031480 |
T |
|
| Q |
267 |
aatggtgccactaggaagttcattggcaagggcttccaacaataatttcctt |
318 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51031481 |
aatggtgccattgggaagttcattggcaagggcttccaacaataatttcctt |
51031532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 167 - 311
Target Start/End: Original strand, 51064129 - 51064273
Alignment:
| Q |
167 |
gttgtttaattaccttagttttgatggttgttccatcagcaagatggattatcttagacaagccagattcttgaatagcaacaacctttgacatgtatct |
266 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||| | ||| || || || |||||||| | |||||||||||||||||||||||| || |
|
|
| T |
51064129 |
gttgtttaattaccttggttttgatggttgttccatcaacaagatgtagtattttggaaaaaccagattcctcaatagcaacaacctttgacatgtacct |
51064228 |
T |
|
| Q |
267 |
aatggtgccactaggaagttcattggcaagggcttccaacaataa |
311 |
Q |
| |
|
|||||||||| | ||||||||||| |||||||||||||||||||| |
|
|
| T |
51064229 |
aatggtgccattgggaagttcatttgcaagggcttccaacaataa |
51064273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 176 - 311
Target Start/End: Complemental strand, 40616650 - 40616515
Alignment:
| Q |
176 |
ttaccttagttttgatggttgttccatcagcaagatggattatcttagacaagccagattcttgaatagcaacaacctttgacatgtatctaatggtgcc |
275 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||| ||||||| | || |||||||| |||||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
40616650 |
ttaccttggttttgatggttgttccatcggcaagatggagtatcttaaagaaaccagattcctgaatagcaacaacctttgacaagtacctaatagtgcc |
40616551 |
T |
|
| Q |
276 |
actaggaagttcattggcaagggcttccaacaataa |
311 |
Q |
| |
|
||| ||||| ||| | |||||||||||||||||||| |
|
|
| T |
40616550 |
acttggaagctcactagcaagggcttccaacaataa |
40616515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 176 - 311
Target Start/End: Original strand, 51069541 - 51069676
Alignment:
| Q |
176 |
ttaccttagttttgatggttgttccatcagcaagatggattatcttagacaagccagattcttgaatagcaacaacctttgacatgtatctaatggtgcc |
275 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||| | ||| ||| | || |||||||| | |||||||| || ||||||||||| |||||||||| |
|
|
| T |
51069541 |
ttacctttgttttgatggttgttccatcaacaagatgtagtattttaaagaatccagattcctctatagcaacgacttttgacatgtacctaatggtgct |
51069640 |
T |
|
| Q |
276 |
actaggaagttcattggcaagggcttccaacaataa |
311 |
Q |
| |
|
| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
51069641 |
atttggaagttcattgccaagggcttccaacaataa |
51069676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 40616822 - 40616751
Alignment:
| Q |
1 |
aagaggcctccttgaagcctaaccattttgctaccacagagtttactccatcacacccaatcaatacctttt |
72 |
Q |
| |
|
||||||||||||||||||||| ||| |||||||||| |||||| |||||||||||||| ||||||||||||| |
|
|
| T |
40616822 |
aagaggcctccttgaagcctagccactttgctaccaaagagttaactccatcacacccgatcaatacctttt |
40616751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 51069396 - 51069463
Alignment:
| Q |
5 |
ggcctccttgaagcctaaccattttgctaccacagagtttactccatcacacccaatcaatacctttt |
72 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||| | ||||||||| || ||||||||||||| |
|
|
| T |
51069396 |
ggcctccttgaagcctaaccactttgcaaccacagagttgattccatcacatcctatcaatacctttt |
51069463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University