View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14353_low_37 (Length: 385)

Name: NF14353_low_37
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14353_low_37
NF14353_low_37
[»] chr7 (4 HSPs)
chr7 (78-273)||(18103107-18103301)
chr7 (104-275)||(18066461-18066632)
chr7 (21-262)||(18129667-18129897)
chr7 (282-323)||(35290033-35290074)
[»] scaffold0027 (1 HSPs)
scaffold0027 (274-355)||(42722-42803)
[»] chr4 (3 HSPs)
chr4 (274-321)||(20960674-20960721)
chr4 (274-355)||(31041348-31041429)
chr4 (291-355)||(4702574-4702638)
[»] scaffold0896 (1 HSPs)
scaffold0896 (274-355)||(3138-3218)
[»] chr6 (3 HSPs)
chr6 (274-355)||(8810637-8810717)
chr6 (302-354)||(6365984-6366036)
chr6 (277-321)||(10278484-10278528)
[»] scaffold0334 (1 HSPs)
scaffold0334 (274-321)||(5213-5260)
[»] chr3 (2 HSPs)
chr3 (274-333)||(8174289-8174347)
chr3 (272-321)||(14030716-14030765)
[»] chr1 (5 HSPs)
chr1 (274-321)||(42440131-42440178)
chr1 (275-333)||(1579432-1579490)
chr1 (274-351)||(13234079-13234156)
chr1 (274-355)||(31979418-31979499)
chr1 (274-323)||(41950067-41950116)
[»] chr8 (2 HSPs)
chr8 (306-355)||(9639995-9640044)
chr8 (273-321)||(943128-943176)
[»] chr2 (1 HSPs)
chr2 (274-322)||(4138021-4138069)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 78 - 273
Target Start/End: Original strand, 18103107 - 18103301
Alignment:
Q  78 caataattacttgtgaagtagataagtcacgttgagatgatttctgtgagggaagtagaagtattcctgcaatagtaacattataatacactttgcatta 177  Q
    |||||| ||| ||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  18103107 caataactacctgtgaagtagataagtcacgttgagatgatttctccgagggaagtagaagtatgcctgcaatattaacattaaaatacactttgcatta 18103206  T
Q  178 ctctattcgtcgtaagttataactcacgttggaaaaaacaatttgtctcaaattagaaatcatttgactatattaatgaaacattattgtttcctc 273  Q
    ||| |||||||||||||||||| |||||||| |||||| |||||||||||| ||| ||||||||||| |||| ||||||||||||||| |||||||    
T  18103207 ctcgattcgtcgtaagttataagtcacgttgcaaaaaataatttgtctcaacttaaaaatcatttgagtata-taatgaaacattattttttcctc 18103301  T

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Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 104 - 275
Target Start/End: Original strand, 18066461 - 18066632
Alignment:
Q  104 tcacgttgagatgatttctgtgagggaagtagaagtattcctgcaatagtaacattataatacactttgcattactctattcgtcgtaagttataactca 203  Q
    ||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||    
T  18066461 tcacgttgagatggtttctgcgagggaagtagaagtatacctgcaatagtaacattaaaatacactttgcattactctatttgtcgtaagttataagtca 18066560  T
Q  204 cgttggaaaaaacaatttgtctcaaattagaaatcatttgactatattaatgaaacattattgtttcctctt 275  Q
    ||||| |||||| ||||||| | ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  18066561 cgttgcaaaaaataatttgtttaaaattagaaatcatttgactatattcataaaacattattgtttcctctt 18066632  T

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Target: chr7; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 262
Target Start/End: Original strand, 18129667 - 18129897
Alignment:
Q  21 aatgaagttactatgaatcagtatcattgtgcctatggctaaaaccatggatatggtcaataattacttgtgaagtagataagtcacgttgagatgattt 120  Q
    ||||||||||||| || ||| ||||||||||||||||||||||||||||||||| | |||||| ||| | |||||||||||||||||||||||||  |||    
T  18129667 aatgaagttactacgactcaatatcattgtgcctatggctaaaaccatggatatagccaataactacctttgaagtagataagtcacgttgagattgttt 18129766  T
Q  121 ctgtgagggaagtagaagtattcctgcaatagtaacattataatacactttgcattactctattcgtcgtaagttataactcacgttggaaaaaacaatt 220  Q
    ||  ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||           |||||| ||||    
T  18129767 ctccgagggaagtagaagtattcctgcaatattaacattataatacactttccattactctatttgtcgtaagttata-----------aaaaaataatt 18129855  T
Q  221 tgtctcaaattagaaatcatttgactatattaatgaaacatt 262  Q
    ||| | ||||||||||||||||||||||||| || |||||||    
T  18129856 tgtttaaaattagaaatcatttgactatattcataaaacatt 18129897  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 323
Target Start/End: Complemental strand, 35290074 - 35290033
Alignment:
Q  282 tggtggttcgggtttgaatttcagaccttgcatatattatat 323  Q
    |||||||| ||||||||| |||||||||| ||||||||||||    
T  35290074 tggtggttggggtttgaacttcagaccttccatatattatat 35290033  T

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Target: scaffold0027 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 42803 - 42722
Alignment:
Q  274 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttctaacaagtgggttaagctcacgag 355  Q
    |||||| |||||||| |||||||||| | |||||||| |||||||||||| ||||||||  ||| || |||||| |||||||    
T  42803 tttttttgtggtggtccgggtttgaactacagaccttacatatattatatattgtttcttccaactgagttaagttcacgag 42722  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 20960674 - 20960721
Alignment:
Q  274 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattat 321  Q
    |||||||||||||| | |||||||||||||||| ||||||||||||||    
T  20960674 ttttttggtggtggctggggtttgaatttcagatcttgcatatattat 20960721  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 355
Target Start/End: Original strand, 31041348 - 31041429
Alignment:
Q  274 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttctaacaagtgggttaagctcacgag 355  Q
    ||||||| |||||| | |||||| ||   ||||||||||||||||||||  ||||||||| ||| || ||||||||||||||    
T  31041348 ttttttgatggtggctagggtttaaaccccagaccttgcatatattatacattgtttctaccaaatgagttaagctcacgag 31041429  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 355
Target Start/End: Complemental strand, 4702638 - 4702574
Alignment:
Q  291 gggtttgaatttcagaccttgcatatattatatgttgtttctaacaagtgggttaagctcacgag 355  Q
    ||||||||||  |||||||||||||| |||||||||||| ||| |||  | | ||||||||||||    
T  4702638 gggtttgaatcacagaccttgcatattttatatgttgttcctatcaacagagctaagctcacgag 4702574  T

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Target: scaffold0896 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 3218 - 3138
Alignment:
Q  274 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttctaacaagtgggttaagctcacgag 355  Q
    ||||||| |||||||||||||||||| | ||||||||||||||||||| | |||| | || ||| || | ||||||||||||    
T  3218 ttttttgttggtggttcgggtttgaact-cagaccttgcatatattatgtattgtctttaccaactgagctaagctcacgag 3138  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 274 - 355
Target Start/End: Complemental strand, 8810717 - 8810637
Alignment:
Q  274 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttctaacaagtgggttaagctcacgag 355  Q
    |||||| ||||||||||||||||||| | ||||||||||||||||||| | |||| | || ||| || | ||||||||||||    
T  8810717 tttttttgtggtggttcgggtttgaact-cagaccttgcatatattatgtattgtctttaccaactgagctaagctcacgag 8810637  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 6366036 - 6365984
Alignment:
Q  302 tcagaccttgcatatattatatgttgtttctaacaagtgggttaagctcacga 354  Q
    |||||||||||||||||||||||||||   |||||| || | |||||||||||    
T  6366036 tcagaccttgcatatattatatgttgtccttaacaactgagctaagctcacga 6365984  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 321
Target Start/End: Complemental strand, 10278528 - 10278484
Alignment:
Q  277 tttggtggtggttcgggtttgaatttcagaccttgcatatattat 321  Q
    ||||||||||||| ||||| ||| |||||| ||||||||||||||    
T  10278528 tttggtggtggttggggttcgaacttcagatcttgcatatattat 10278484  T

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Target: scaffold0334 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 321
Target Start/End: Complemental strand, 5260 - 5213
Alignment:
Q  274 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattat 321  Q
    |||||| ||||||||| |||||||||  ||||||||||||||||||||    
T  5260 tttttttgtggtggttggggtttgaacctcagaccttgcatatattat 5213  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 333
Target Start/End: Complemental strand, 8174347 - 8174289
Alignment:
Q  274 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttcta 333  Q
    |||||| ||||||||  ||||||||||| ||||||||||||||||||||| |||| ||||    
T  8174347 tttttttgtggtggtcggggtttgaatt-cagaccttgcatatattatatattgtctcta 8174289  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 321
Target Start/End: Original strand, 14030716 - 14030765
Alignment:
Q  272 tcttttttggtggtggttcgggtttgaatttcagaccttgcatatattat 321  Q
    |||||||||||||||||  ||||||||| | || ||||||||||||||||    
T  14030716 tcttttttggtggtggtcggggtttgaactccaaaccttgcatatattat 14030765  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 274 - 321
Target Start/End: Original strand, 42440131 - 42440178
Alignment:
Q  274 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattat 321  Q
    |||||||||||||||| ||||||||| | |||||||| ||||||||||    
T  42440131 ttttttggtggtggttagggtttgaactccagaccttacatatattat 42440178  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 333
Target Start/End: Complemental strand, 1579490 - 1579432
Alignment:
Q  275 tttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttcta 333  Q
    ||||||||||||||   ||||| ||||||||||||| |||||||||||| |||| ||||    
T  1579490 tttttggtggtggtcgaggtttaaatttcagaccttacatatattatatattgtctcta 1579432  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 351
Target Start/End: Complemental strand, 13234156 - 13234079
Alignment:
Q  274 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttctaacaagtgggttaagctca 351  Q
    |||||| ||||||||  |||||||| | ||||||||||||||||||||  |||||| ||| ||| || | ||||||||    
T  13234156 tttttttgtggtggtcggggtttgattctcagaccttgcatatattatgcgttgttcctaccaactgagctaagctca 13234079  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 355
Target Start/End: Original strand, 31979418 - 31979499
Alignment:
Q  274 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatatgttgtttctaacaagtgggttaagctcacgag 355  Q
    |||||| ||||||||| ||||||||| | || |||||||||||| ||||| |||| |||| ||| |  |||||| |||||||    
T  31979418 tttttttgtggtggttggggtttgaactccaaaccttgcatataatatatattgtctctaccaactaagttaagttcacgag 31979499  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 323
Target Start/End: Original strand, 41950067 - 41950116
Alignment:
Q  274 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattatat 323  Q
    |||||||||||||||  ||||| |||  ||||||||||||||||||||||    
T  41950067 ttttttggtggtggtcggggttcgaacctcagaccttgcatatattatat 41950116  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 306 - 355
Target Start/End: Complemental strand, 9640044 - 9639995
Alignment:
Q  306 accttgcatatattatatgttgtttctaacaagtgggttaagctcacgag 355  Q
    ||||| ||||||||||  |||||||||||||| || ||||||||||||||    
T  9640044 accttacatatattattcgttgtttctaacaactgagttaagctcacgag 9639995  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 273 - 321
Target Start/End: Complemental strand, 943176 - 943128
Alignment:
Q  273 cttttttggtggtggttcgggtttgaatttcagaccttgcatatattat 321  Q
    ||||||||||||||||| ||||| ||||| | |||||||||||| ||||    
T  943176 cttttttggtggtggttggggttcgaattccggaccttgcatattttat 943128  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 322
Target Start/End: Complemental strand, 4138069 - 4138021
Alignment:
Q  274 ttttttggtggtggttcgggtttgaatttcagaccttgcatatattata 322  Q
    |||||| ||||||||  |||||||||| || ||||||||||||||||||    
T  4138069 tttttttgtggtggtcggggtttgaatctcggaccttgcatatattata 4138021  T

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