View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14353_low_38 (Length: 377)
Name: NF14353_low_38
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 34303059 - 34303271
Alignment:
| Q |
1 |
caataaagcatttagttaattgatcattagtggttgatttatgcaccttaatgatgttgactatacttttgttatcccattcaagaagattatttttatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34303059 |
caataaagcatttagttaattgatcattagtggttgatttatgcaccttaatgatgttgactatacttttgttatcccattcaagaagattatttttatc |
34303158 |
T |
|
| Q |
101 |
tattcacaaatagggcatatttgaattgacttgtttgagcttttctaccgacataagcccttgtaagactgtttcggacaatttatataaacaacttact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34303159 |
tattcacaaatagggcatatttgaattgacttgtttgagcttatctaccgacataagcccttgtaagactgtttcggacaatttatataaacaacttact |
34303258 |
T |
|
| Q |
201 |
agatgttcgtaag |
213 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
34303259 |
agatgttcttaag |
34303271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 206 - 365
Target Start/End: Original strand, 34303288 - 34303447
Alignment:
| Q |
206 |
ttcgtaagctcttcatagtagcttatgaaagagtttataactagcttgacaaaagcttgtactaaaagtgcttacttaaactgtttattgaaatgtggcc |
305 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
34303288 |
ttcgtaagttcttcatagtagcttatgaaacagtttataactagcttcacaaaagcttatactaaaagtgcttacttaaactgtatattgaaatgtggcc |
34303387 |
T |
|
| Q |
306 |
gatatttgagctacaattcctattgtaatcttaaactattcatccatcattggaaatatt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34303388 |
gatatttgagctacaattcctattgtaatcttaaactattcatccatcattggaaatatt |
34303447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 27807260 - 27807210
Alignment:
| Q |
124 |
aattgacttgtttgagcttttctaccgacataagcccttgtaagactgttt |
174 |
Q |
| |
|
||||||||| ||||| ||||||||| ||||||||| |||||||||||||| |
|
|
| T |
27807260 |
aattgacttatttgaacttttctactgacataagcatttgtaagactgttt |
27807210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 174
Target Start/End: Complemental strand, 2457090 - 2457036
Alignment:
| Q |
120 |
tttgaattgacttgtttgagcttttctaccgacataagcccttgtaagactgttt |
174 |
Q |
| |
|
|||| |||| ||| |||||| || ||||||||||||||| ||||||||||||||| |
|
|
| T |
2457090 |
tttggattggcttatttgagattatctaccgacataagcacttgtaagactgttt |
2457036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 184
Target Start/End: Complemental strand, 41057313 - 41057240
Alignment:
| Q |
111 |
tagggcatatttgaattgacttgtttgagcttttctaccgacataagcccttgtaagactgtttcggacaattt |
184 |
Q |
| |
|
|||||| ||||||||||| ||| ||||||||| ||||| ||||||| ||||| ||||||||| ||| ||||| |
|
|
| T |
41057313 |
tagggcctatttgaattggcttatttgagcttatctacatgcataagcacttgtgagactgtttgggagaattt |
41057240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 1821980 - 1821928
Alignment:
| Q |
118 |
tatttgaattgacttgtttgagcttttctaccgacataagcccttgtaagact |
170 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
1821980 |
tatttgaattgacttatttgagcttagataccgacataaacacttgtaagact |
1821928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 1856425 - 1856373
Alignment:
| Q |
118 |
tatttgaattgacttgtttgagcttttctaccgacataagcccttgtaagact |
170 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||| | ||||||||||| |
|
|
| T |
1856425 |
tatttgaattgacttatttgagcttagataccgacataaacacttgtaagact |
1856373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University