View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14353_low_39 (Length: 375)

Name: NF14353_low_39
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14353_low_39
NF14353_low_39
[»] chr8 (27 HSPs)
chr8 (17-273)||(3099574-3099831)
chr8 (274-358)||(3101050-3101134)
chr8 (133-263)||(8903853-8903983)
chr8 (133-263)||(1977222-1977352)
chr8 (133-251)||(28413918-28414036)
chr8 (133-251)||(31301128-31301245)
chr8 (133-270)||(9952806-9952943)
chr8 (133-266)||(32072095-32072228)
chr8 (133-219)||(17499282-17499368)
chr8 (156-225)||(6387600-6387669)
chr8 (133-217)||(23685178-23685262)
chr8 (133-217)||(43506582-43506666)
chr8 (172-215)||(36804927-36804970)
chr8 (133-263)||(8914772-8914902)
chr8 (137-198)||(35819198-35819259)
chr8 (55-119)||(6098781-6098845)
chr8 (133-263)||(16983395-16983525)
chr8 (52-118)||(16983507-16983573)
chr8 (55-129)||(24055929-24056003)
chr8 (133-219)||(24055974-24056060)
chr8 (159-225)||(34861262-34861328)
chr8 (129-217)||(13407368-13407457)
chr8 (159-216)||(33417730-33417787)
chr8 (178-219)||(35151823-35151864)
chr8 (134-251)||(41727443-41727560)
chr8 (159-263)||(5979881-5979985)
chr8 (133-177)||(7493391-7493435)
[»] chr3 (29 HSPs)
chr3 (131-270)||(55452062-55452199)
chr3 (133-268)||(46450063-46450197)
chr3 (133-258)||(24734711-24734836)
chr3 (133-258)||(41451944-41452069)
chr3 (133-225)||(18427199-18427291)
chr3 (135-269)||(37776754-37776888)
chr3 (133-269)||(28529248-28529382)
chr3 (133-262)||(8825028-8825157)
chr3 (133-249)||(26310495-26310611)
chr3 (133-263)||(46160950-46161078)
chr3 (133-263)||(20493494-20493624)
chr3 (172-269)||(46237134-46237231)
chr3 (156-219)||(13809126-13809189)
chr3 (133-216)||(19345049-19345132)
chr3 (128-263)||(52124000-52124135)
chr3 (129-258)||(27243051-27243181)
chr3 (128-217)||(20791343-20791432)
chr3 (159-264)||(24748985-24749090)
chr3 (128-216)||(2419508-2419596)
chr3 (52-120)||(24734816-24734884)
chr3 (52-120)||(41451896-41451964)
chr3 (137-195)||(752461-752519)
chr3 (55-129)||(28529353-28529427)
chr3 (172-225)||(21232610-21232663)
chr3 (135-204)||(41707490-41707559)
chr3 (58-111)||(49418426-49418479)
chr3 (52-129)||(52123957-52124034)
chr3 (137-225)||(22604599-22604687)
chr3 (48-116)||(39186079-39186147)
[»] chr7 (27 HSPs)
chr7 (133-268)||(33008100-33008235)
chr7 (133-263)||(31502513-31502643)
chr7 (128-269)||(11824066-11824207)
chr7 (58-189)||(36845498-36845627)
chr7 (137-263)||(32205080-32205203)
chr7 (133-269)||(22189934-22190070)
chr7 (133-268)||(6442161-6442296)
chr7 (159-225)||(17354602-17354668)
chr7 (134-263)||(48374489-48374616)
chr7 (133-263)||(46517294-46517422)
chr7 (133-204)||(9648984-9649055)
chr7 (133-204)||(27888342-27888413)
chr7 (133-251)||(7459356-7459474)
chr7 (133-219)||(12263485-12263571)
chr7 (159-263)||(22786152-22786256)
chr7 (159-227)||(25428554-25428622)
chr7 (159-225)||(7775039-7775105)
chr7 (137-223)||(10934018-10934104)
chr7 (137-219)||(11692224-11692306)
chr7 (43-120)||(11824182-11824257)
chr7 (159-233)||(19494414-19494488)
chr7 (159-268)||(13919776-13919885)
chr7 (186-263)||(19422936-19423013)
chr7 (52-129)||(27949375-27949452)
chr7 (52-120)||(6580003-6580071)
chr7 (175-219)||(12271031-12271075)
chr7 (133-217)||(25686884-25686968)
[»] chr4 (33 HSPs)
chr4 (133-263)||(20225390-20225518)
chr4 (133-263)||(43771127-43771257)
chr4 (133-263)||(45081791-45081921)
chr4 (128-269)||(8108951-8109092)
chr4 (133-217)||(24834625-24834709)
chr4 (133-277)||(49077236-49077380)
chr4 (128-251)||(50164408-50164531)
chr4 (137-219)||(22542426-22542508)
chr4 (133-219)||(39471202-39471288)
chr4 (162-250)||(22592318-22592406)
chr4 (175-267)||(43958148-43958240)
chr4 (52-129)||(39471259-39471336)
chr4 (133-225)||(24938464-24938556)
chr4 (133-204)||(13520009-13520080)
chr4 (128-263)||(33653533-33653668)
chr4 (133-219)||(26361357-26361443)
chr4 (140-264)||(46242000-46242122)
chr4 (133-225)||(29699528-29699619)
chr4 (133-225)||(50481594-50481686)
chr4 (161-249)||(50879471-50879559)
chr4 (133-216)||(4138913-4138996)
chr4 (154-217)||(39016710-39016773)
chr4 (133-204)||(48339389-48339460)
chr4 (193-272)||(50571856-50571935)
chr4 (159-269)||(13069936-13070045)
chr4 (133-263)||(34129449-34129579)
chr4 (52-129)||(8109058-8109135)
chr4 (133-258)||(20454546-20454669)
chr4 (133-217)||(722204-722288)
chr4 (57-129)||(722259-722331)
chr4 (179-267)||(1559812-1559900)
chr4 (195-267)||(39016777-39016849)
chr4 (133-209)||(49242225-49242301)
[»] scaffold0018 (2 HSPs)
scaffold0018 (133-218)||(27858-27943)
scaffold0018 (48-129)||(27914-27995)
[»] chr6 (18 HSPs)
chr6 (133-269)||(445813-445949)
chr6 (133-267)||(34905333-34905467)
chr6 (133-256)||(31116173-31116296)
chr6 (138-225)||(31443998-31444085)
chr6 (157-219)||(12327278-12327340)
chr6 (133-219)||(32598997-32599083)
chr6 (137-217)||(17144724-17144804)
chr6 (59-119)||(32112725-32112785)
chr6 (133-217)||(32112766-32112850)
chr6 (133-216)||(16852022-16852105)
chr6 (133-219)||(16436110-16436195)
chr6 (133-217)||(12780808-12780892)
chr6 (133-216)||(32122843-32122926)
chr6 (133-251)||(5106311-5106429)
chr6 (128-217)||(21987339-21987428)
chr6 (52-129)||(34905438-34905515)
chr6 (159-268)||(35128798-35128907)
chr6 (159-219)||(19090290-19090350)
[»] chr2 (27 HSPs)
chr2 (133-269)||(26767810-26767946)
chr2 (133-267)||(9470078-9470212)
chr2 (133-251)||(30718376-30718493)
chr2 (133-269)||(12989186-12989322)
chr2 (141-266)||(6980177-6980302)
chr2 (133-217)||(37652294-37652378)
chr2 (133-200)||(10981582-10981649)
chr2 (159-268)||(15508910-15509019)
chr2 (50-130)||(12989292-12989372)
chr2 (159-263)||(42182890-42182994)
chr2 (180-263)||(45554568-45554651)
chr2 (159-269)||(28898112-28898222)
chr2 (55-129)||(45554661-45554735)
chr2 (53-118)||(34142141-34142206)
chr2 (133-269)||(18511258-18511394)
chr2 (156-263)||(1110199-1110306)
chr2 (179-266)||(4602962-4603049)
chr2 (58-129)||(6980127-6980198)
chr2 (133-264)||(16719479-16719610)
chr2 (131-268)||(24895313-24895449)
chr2 (134-217)||(43414402-43414485)
chr2 (133-204)||(44274294-44274365)
chr2 (52-119)||(44274346-44274413)
chr2 (80-129)||(9470183-9470232)
chr2 (128-217)||(30849284-30849373)
chr2 (159-268)||(11539419-11539530)
chr2 (133-217)||(38464210-38464294)
[»] chr1 (32 HSPs)
chr1 (137-216)||(1093126-1093205)
chr1 (133-263)||(931375-931505)
chr1 (139-249)||(24911480-24911588)
chr1 (133-216)||(33193098-33193181)
chr1 (133-225)||(41958122-41958214)
chr1 (52-119)||(16948530-16948597)
chr1 (133-204)||(30678960-30679031)
chr1 (133-263)||(6133674-6133803)
chr1 (133-263)||(25543341-25543470)
chr1 (133-251)||(26980311-26980429)
chr1 (128-219)||(2225269-2225360)
chr1 (133-244)||(15928575-15928686)
chr1 (133-263)||(3872683-3872812)
chr1 (159-269)||(11135734-11135844)
chr1 (135-221)||(11987669-11987755)
chr1 (133-263)||(22540369-22540499)
chr1 (52-117)||(39974201-39974266)
chr1 (137-217)||(8741276-8741356)
chr1 (133-225)||(32211833-32211925)
chr1 (172-216)||(39974282-39974326)
chr1 (159-263)||(44739119-44739223)
chr1 (211-267)||(50773105-50773161)
chr1 (159-270)||(11430435-11430546)
chr1 (155-225)||(50773182-50773252)
chr1 (172-225)||(50539163-50539216)
chr1 (58-118)||(8741230-8741290)
chr1 (133-217)||(15523257-15523341)
chr1 (133-217)||(15531251-15531335)
chr1 (128-263)||(19101645-19101780)
chr1 (159-267)||(41095684-41095792)
chr1 (133-217)||(44271965-44272049)
chr1 (133-225)||(49730903-49730995)
[»] chr5 (19 HSPs)
chr5 (133-225)||(5413786-5413878)
chr5 (128-219)||(41330437-41330528)
chr5 (140-225)||(34384747-34384832)
chr5 (159-268)||(42224666-42224775)
chr5 (137-204)||(10950146-10950213)
chr5 (133-263)||(34368361-34368491)
chr5 (161-270)||(13381857-13381965)
chr5 (133-269)||(17537151-17537287)
chr5 (133-209)||(25919266-25919342)
chr5 (133-225)||(36337939-36338031)
chr5 (133-268)||(28223825-28223960)
chr5 (133-204)||(37455409-37455479)
chr5 (133-225)||(43405432-43405524)
chr5 (172-218)||(25564034-25564080)
chr5 (133-217)||(1923601-1923685)
chr5 (159-263)||(4959279-4959383)
chr5 (133-225)||(10142025-10142117)
chr5 (187-263)||(32050413-32050489)
chr5 (89-129)||(43405495-43405535)
[»] scaffold0543 (1 HSPs)
scaffold0543 (137-217)||(9711-9791)
[»] scaffold0492 (1 HSPs)
scaffold0492 (137-217)||(11257-11337)
[»] scaffold0204 (1 HSPs)
scaffold0204 (133-204)||(26911-26982)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 3099574 - 3099831
Alignment:
Q  17 cataggggcactctttacgaatcttaaatgggtagtgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattg 116  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||  ||| ||||||||||||||||||||| || |||||| ||||||||||||    
T  3099574 catagggacactctttacgaatcttaaatgagtagtgttaacaacactct--tattaatattttctctaattttcactcttttattggtttaaatcattg 3099671  T
Q  117 tgggac---tatacttctcattggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaat 213  Q
    |||||    ||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3099672 tgggatcattatacttttcattggtttaaattattgtgagactatactttggaaatataactcacacaaaatggtggaacatacattgattccatctaat 3099771  T
Q  214 aaaagaatgagtacgagagataatgttcaaaagtgagtattgctaacatttctcatctta 273  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  3099772 aaaagaatgagtacgggagatagtgttcaaaaatgagtattgctaacatttctcatctta 3099831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 274 - 358
Target Start/End: Original strand, 3101050 - 3101134
Alignment:
Q  274 aatatgagttggaagaagaaaaagaaagaagtccatgagtcacatgtgtaatgttttttctgcttcactctccatatataaaatt 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  3101050 aatatgagttggaagaagaaaaagaaagaagtccatgagtcacatgtgtaatgttttttctgtttcactctccatatataaaatt 3101134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 8903983 - 8903853
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| | ||| |||||| ||||  |||| ||||||| |||||| ||||||||||||| |||| ||||||  | ||||||| ||||    
T  8903983 attggtttaaatcattgtgggtctacactttgaaaattgaaccgacacaaagtggtgggacatacattgatttcatcaaataaacaagtgagtactagag 8903884  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
    | | |||| |||| ||||| |||||||||||    
T  8903883 agagtgttgaaaaatgagtgttgctaacatt 8903853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 133 - 263
Target Start/End: Original strand, 1977222 - 1977352
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||||||||||||||||||   ||| |||||| ||||  |||||||||||| |||| | ||||||||||||| |||| || | |||| ||||| | ||||    
T  1977222 attggtttaaatcattgtggatctacactttgaaaattgaacccacacaaagtggttggacatacattgatttcatccaacagaagagtgagtgctagag 1977321  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
    | | |||| ||||||||||||||||| ||||    
T  1977322 agagtgttaaaaagtgagtattgctagcatt 1977352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 28413918 - 28414036
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||||||||||||||| || | |||||||||| ||||  ||| |||||||| |||||| ||||||||||||| |||| ||||||| | ||||  | ||||    
T  28413918 attggtttaaatcattatgggtctatactttgaaaattgaactcacacaaagtggtgggacatacattgatttcatcgaataaaaaagtgagcgctagag 28414017  T
Q  233 ataatgttcaaaagtgagt 251  Q
    | | |||| ||||||||||    
T  28414018 agagtgttgaaaagtgagt 28414036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 251
Target Start/End: Complemental strand, 31301245 - 31301128
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||||||||||| ||| |||  ||| || ||| ||||| ||| |||||||| |||||||||||||||||||| |||| ||||||||| ||||| |  ||     
T  31301245 attggtttaaattattatgat-ctacacattgaaaatagaactcacacaaagtggtggaacatacattgatttcatccaataaaagagtgagtgccggaa 31301147  T
Q  233 ataatgttcaaaagtgagt 251  Q
    ||| |||||||||||||||    
T  31301146 atagtgttcaaaagtgagt 31301128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 270
Target Start/End: Original strand, 9952806 - 9952943
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| |  || |||||| ||||  ||| |||||||| |||||| |||| |||||||| |||| ||||||| ||||||| | ||||    
T  9952806 attggtttaaatcattgtgggtttacactttgaaaattgaactcacacaaagtggtgggacatgcattgatttcatccaataaaaaaatgagtgctagag 9952905  T
Q  233 ataatgttcaaaagtgagtattgctaacatttctcatc 270  Q
    | | |||| |||||| | | || ||| |||||||||||    
T  9952906 agagtgttgaaaagtaaatgttactagcatttctcatc 9952943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 133 - 266
Target Start/End: Complemental strand, 32072228 - 32072095
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||| ||||||| |||||| | ||| |||||  ||||  |||||||||||| |||||| ||||||||| ||| |||| ||||||||| ||||| | ||||    
T  32072228 attgatttaaataattgtgggtctacactttaaaaattgaacccacacaaagtggtgggacatacattcatttcatccaataaaagagtgagtgctagag 32072129  T
Q  233 ataatgttcaaaagtgagtattgctaacatttct 266  Q
    | | |||| |||||||| | |||||| |||||||    
T  32072128 agagtgttgaaaagtgaatgttgctagcatttct 32072095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 17499282 - 17499368
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    |||||||||||||||||||   ||| |||||| ||||  |||| |||||||||||||| ||||| ||||||| |||| |||||||||    
T  17499282 attggtttaaatcattgtggatctacactttgaaaattgaaccaacacaaaatggtgggacatatattgatttcatccaataaaaga 17499368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 225
Target Start/End: Complemental strand, 6387669 - 6387600
Alignment:
Q  156 tatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    ||||||||||||||  |||||||| |||||||||| |||||||||||||  ||| ||||||||| |||||    
T  6387669 tatactttggaaatggaacccacataaaatggtgggacatacattgattttatccaataaaagagtgagt 6387600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 23685262 - 23685178
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    ||||||||||||||||| ||  ||| |||||||||||| ||| | || ||| |||||| ||||||||||||| |||| |||||||    
T  23685262 attggtttaaatcattgcgaatctacactttggaaatagaactcgcataaagtggtgggacatacattgatttcatccaataaaa 23685178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 43506666 - 43506582
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    ||||| ||||||||||||| | ||| || ||| || || |||||||||||| ||||||||||||||||||||  ||| |||||||    
T  43506666 attggcttaaatcattgtgggtctacacattgaaagtagaacccacacaaagtggtggaacatacattgattatatccaataaaa 43506582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 36804927 - 36804970
Alignment:
Q  172 aacccacacaaaatggtggaacatacattgattccatctaataa 215  Q
    ||||||||||||||||||| |||||||||||||||||| |||||    
T  36804927 aacccacacaaaatggtgggacatacattgattccatccaataa 36804970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 8914902 - 8914772
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| | ||| |||||| |||   |||||||||||| |||||| |||||||||| ||  ||| ||| ||||| |||||   ||||    
T  8914902 attggtttaaatcattgtgggtctacactttgaaaaatgaacccacacaaagtggtgggacatacattggttttatccaatgaaagagtgagtgttagag 8914803  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
    | |  | |||||||||||| |||||| ||||    
T  8914802 agagcgctcaaaagtgagtgttgctagcatt 8914772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 35819259 - 35819198
Alignment:
Q  137 gtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacataca 198  Q
    ||||||||||||||| | |||||||||| ||||  | ||||||||||||||||| |||||||    
T  35819259 gtttaaatcattgtgggtctatactttgaaaattgagcccacacaaaatggtgggacataca 35819198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 6098781 - 6098845
Alignment:
Q  55 taacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgg 119  Q
    ||||||||||||||| | || ||| ||||||||  |||| ||||||||||||||||| |||||||    
T  6098781 taacaacactctcttttaaacattctctctaatactcactctcttattgatttaaattattgtgg 6098845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 16983525 - 16983395
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||||| ||| |||||| ||||  ||||| |||||| || ||| ||||| | |||||  ||| ||||||  | ||||| | |||     
T  16983525 attggtttaaatcattgtgagtctacactttgaaaattgaacccccacaaagtgatgggacataaaatgattttatccaataaatcagtgagtgctagat 16983426  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
    | | |||| |||||||||| |||||| ||||    
T  16983425 agagtgttgaaaagtgagtgttgctagcatt 16983395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 16983573 - 16983507
Alignment:
Q  52 tgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtg 118  Q
    ||||| |||||||||||| |||| | | ||||||||  |||| ||||||||| ||||||||||||||    
T  16983573 tgctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtg 16983507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 129
Target Start/End: Original strand, 24055929 - 24056003
Alignment:
Q  55 taacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgggactatactt 129  Q
    ||||||||||||||| |||| | |||||||||   |||| ||||||||| ||||||| |||||||| ||| ||||    
T  24055929 taacaacactctcttttgaacactttctctaacactcactctcttattggtttaaataattgtgggtctacactt 24056003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 24055974 - 24056060
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    |||||||||||| |||||| | ||| |||||| ||||  |||  ||||||| |||||| ||||||||| ||| ||||| ||||||||    
T  24055974 attggtttaaataattgtgggtctacactttgaaaattgaacttacacaaagtggtgggacatacattaatttcatctgataaaaga 24056060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 34861262 - 34861328
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    |||||| ||||  |||| ||||||| |||||| ||||||||||||| |||| ||||||||| |||||    
T  34861262 actttgaaaattgaacctacacaaagtggtgggacatacattgatttcatccaataaaagagtgagt 34861328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 217
Target Start/End: Original strand, 13407368 - 13407457
Alignment:
Q  129 tctcattggtttaaatcattgtgagac-tatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    ||||||||| |||||||| |||| | | || |||||| ||||| |||||||  |||||||||| |||||||||||||  ||| |||||||    
T  13407368 tctcattgggttaaatcaatgtgggtcatacactttgaaaatagaacccacttaaaatggtgggacatacattgattttatccaataaaa 13407457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 216
Target Start/End: Complemental strand, 33417787 - 33417730
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaa 216  Q
    |||||||||||  |||||||| ||| ||||||||||| |||||||| || ||||||||    
T  33417787 actttggaaatgaaacccacataaagtggtggaacatgcattgatttcacctaataaa 33417730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 35151823 - 35151864
Alignment:
Q  178 cacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    ||||||||||||| ||||||||||||| |||| |||||||||    
T  35151823 cacaaaatggtgggacatacattgatttcatccaataaaaga 35151864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 251
Target Start/End: Complemental strand, 41727560 - 41727443
Alignment:
Q  134 ttggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagaga 233  Q
    ||||||||||||||| |||| ||| || ||  ||| | |||| |||||||  ||||| |||||||||||||  |||||| |||||| ||| | | | |||    
T  41727560 ttggtttaaatcattatgagtctacacattaaaaacagaacctacacaaagcggtgggacatacattgattttatctaacaaaagagtgattgctaaaga 41727461  T
Q  234 taatgttcaaaagtgagt 251  Q
     | |||||||||||||||    
T  41727460 gagtgttcaaaagtgagt 41727443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 5979985 - 5979881
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgcta 258  Q
    |||||| ||||  |||||||||||| |||||| ||||||||||||  |||| |||| |||| ||  ||| ||||| | |||| |||||| ||| ||||||    
T  5979985 actttgaaaattgaacccacacaaagtggtgggacatacattgatctcatccaatagaagagtgtctactagagagagtgttgaaaagtaagtgttgcta 5979886  T
Q  259 acatt 263  Q
     ||||    
T  5979885 gcatt 5979881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 177
Target Start/End: Original strand, 7493391 - 7493435
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataaccca 177  Q
    ||||||||||||||||||||| ||| |||||| ||||| ||||||    
T  7493391 attggtttaaatcattgtgagtctacactttgaaaatagaaccca 7493435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 131 - 270
Target Start/End: Original strand, 55452062 - 55452199
Alignment:
Q  131 tcattggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgag 230  Q
    |||||||||||||||||| |||| ||| |||||||||||| |||||||||||| |||||| ||||||||  |||||||| ||||||||| ||||||| ||    
T  55452062 tcattggtttaaatcattatgagtctacactttggaaatagaacccacacaaagtggtgggacatacatgtattccatccaataaaagagtgagtaccag 55452161  T
Q  231 agataatgttcaaaagtgagtattgctaacatttctcatc 270  Q
    ||  | ||||||||||||||| ||||||||||| ||||||    
T  55452162 ag--agtgttcaaaagtgagtgttgctaacattcctcatc 55452199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 46450197 - 46450063
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaa-tggtggaacatacattgattccatctaataaaagaatgagtacgaga 231  Q
    ||||||||||||||||||| | ||| |||||| ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||| ||||| | |||    
T  46450197 attggtttaaatcattgtgggtctacactttgcaaatagaacccacacaaaagtggtgggacatacattgattccatctaataaaagagtgagtgctaga 46450098  T
Q  232 gataatgttcaaaagtgagtattgctaacatttctca 268  Q
    |  | ||||||||||||||| |||||| |||| ||||    
T  46450097 g--agtgttcaaaagtgagtgttgctagcattcctca 46450063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 133 - 258
Target Start/End: Complemental strand, 24734836 - 24734711
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| | |||  ||||| ||||  |||||||||||| |||||| |||||| |||||| |||| ||||||||| ||||||| ||||    
T  24734836 attggtttaaatcattgtgggcctactctttgaaaattgaacccacacaaagtggtgggacatactttgatttcatccaataaaagagtgagtactagag 24734737  T
Q  233 ataatgttcaaaagtgagtattgcta 258  Q
    ||  |||| |||||||||| ||||||    
T  24734736 attgtgttgaaaagtgagtgttgcta 24734711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 133 - 258
Target Start/End: Original strand, 41451944 - 41452069
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| | |||  ||||| ||||  |||||||||||| |||||| |||||| |||||| |||| ||||||||| ||||||| ||||    
T  41451944 attggtttaaatcattgtgggtctactctttgaaaattgaacccacacaaagtggtgggacatactttgatttcatccaataaaagagtgagtactagag 41452043  T
Q  233 ataatgttcaaaagtgagtattgcta 258  Q
    ||  |||| |||||||||| ||||||    
T  41452044 attgtgttgaaaagtgagtgttgcta 41452069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 18427199 - 18427291
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    ||||||||||||||||||| | ||| |||||| ||||| ||||||||||||||||||| ||||||||||||| |||| |||||| || |||||    
T  18427199 attggtttaaatcattgtgggtctacactttgaaaatagaacccacacaaaatggtgggacatacattgatttcatccaataaatgagtgagt 18427291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 135 - 269
Target Start/End: Original strand, 37776754 - 37776888
Alignment:
Q  135 tggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagat 234  Q
    ||||||||||||||||  | ||| |||||| ||||  |||||||||||| |||| | ||||||||||||| |||||||||||||| ||||| |  ||||     
T  37776754 tggtttaaatcattgtaggtctacactttgaaaattgaacccacacaaagtggtaggacatacattgatttcatctaataaaagagtgagtgctggagaa 37776853  T
Q  235 aatgttcaaaagtgagtattgctaacatttctcat 269  Q
    | |||| |||||||||| |||||| |||| |||||    
T  37776854 agtgttgaaaagtgagtgttgctagcattcctcat 37776888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 28529382 - 28529248
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| | ||| |||||| ||||  ||||||||||   |||||| ||||||||||||| |||| ||||||||| ||||| | ||||    
T  28529382 attggtttaaatcattgtgggtctacactttgaaaattgaacccacacag--tggtgggacatacattgatttcatccaataaaagagtgagtgctagag 28529285  T
Q  233 ataatgttcaaaagtgagtattgctaacatttctcat 269  Q
    | | |||| |||||||||| |||||| |||| |||||    
T  28529284 agagtgttgaaaagtgagtgttgctagcattcctcat 28529248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 133 - 262
Target Start/End: Original strand, 8825028 - 8825157
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||||||||||| ||||||||  || |||||| ||||  ||||| || |||||||||| ||||| ||||||| |||||||||||||  ||||||| ||||    
T  8825028 attggtttaaattattgtgagtgtagactttgaaaattgaacccgcataaaatggtgggacatatattgatttcatctaataaaagggtgagtactagag 8825127  T
Q  233 ataatgttcaaaagtgagtattgctaacat 262  Q
    | |  ||| |||||||||| ||| ||||||    
T  8825128 agatggttgaaaagtgagtgttggtaacat 8825157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 249
Target Start/End: Original strand, 26310495 - 26310611
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||||||||||||||| || | ||| |||||| ||||  |||| ||| |||||||||| ||||||||||||| |||| ||||||||| | ||| | ||||    
T  26310495 attggtttaaatcattatgggtctacactttgaaaattgaaccaacaaaaaatggtgggacatacattgatttcatccaataaaagagtaagtgctagag 26310594  T
Q  233 ataatgttcaaaagtga 249  Q
    | | |||| ||||||||    
T  26310595 agagtgttgaaaagtga 26310611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 46161078 - 46160950
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||||||||||||||| ||   ||| |||||||||||| |||| ||||||| |||| | ||||  ||||||| |||| ||||||||| ||||| | ||||    
T  46161078 attggtttaaatcattatggatctacactttggaaatagaaccaacacaaagtggtcggacatgtattgatttcatccaataaaagagtgagtgctagag 46160979  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
      | ||||||||||||||| |||||| ||||    
T  46160978 --agtgttcaaaagtgagtgttgctagcatt 46160950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 263
Target Start/End: Original strand, 20493494 - 20493624
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| | ||| |||||| | ||  ||||| |||||| |||| | ||||||||||||| |||| |||||| || |||||   ||||    
T  20493494 attggtttaaatcattgtgggtctacactttgaatattgaacccccacaaagtggtaggacatacattgatttcatccaataaatgagtgagtgttagag 20493593  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
    | | |||| |||||||||| |||||| ||||    
T  20493594 agagtgttgaaaagtgagtgttgctagcatt 20493624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 269
Target Start/End: Original strand, 46237134 - 46237231
Alignment:
Q  172 aacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgctaacatttctcat 269  Q
    |||||||| ||| |||||| ||||||||||||| |||| ||||||||| ||| | | ||||| | || ||||||| |||| ||||||||| |||||||    
T  46237134 aacccacataaagtggtgggacatacattgatttcatccaataaaagagtgattgctagagagagtgctcaaaagagagtgttgctaacacttctcat 46237231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 13809189 - 13809126
Alignment:
Q  156 tatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    ||||||||||||||  |||||||| |||||||||| |||||||||||||  ||| |||||||||    
T  13809189 tatactttggaaatggaacccacataaaatggtgggacatacattgattttatccaataaaaga 13809126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 19345049 - 19345132
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaa 216  Q
    ||||||||||||||||||||| ||| | |||| ||||  |||||  ||||| |||||| ||||||||||||| |||| ||||||    
T  19345049 attggtttaaatcattgtgagtctacaatttgaaaattgaaccccaacaaagtggtgggacatacattgatttcatccaataaa 19345132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 263
Target Start/End: Original strand, 52124000 - 52124135
Alignment:
Q  128 ttctcattggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtac 227  Q
    |||| ||||||||||||||||||| | ||| |||||| ||||  ||||| |||||||| |||| ||||||||| ||| |||| || |||  | ||||| |    
T  52124000 ttcttattggtttaaatcattgtgggtctacactttgaaaattgaacccccacaaaatagtgggacatacattaatttcatccaacaaataagtgagtgc 52124099  T
Q  228 gagagataatgttcaaaagtgagtattgctaacatt 263  Q
     ||||| |  ||| |||||||||| |||||| ||||    
T  52124100 tagagagagcgttaaaaagtgagtgttgctagcatt 52124135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 258
Target Start/End: Complemental strand, 27243181 - 27243051
Alignment:
Q  129 tctcattggtttaaatcattgtgagac-tatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtac 227  Q
    ||||||||| |||||||| |||| | | || |||||||||||  |||||||| ||| |||||| |||| ||||||||  ||| ||||||||| |||||      
T  27243181 tctcattgggttaaatcaatgtgggtcatacactttggaaatggaacccacataaagtggtgggacatgcattgattttatccaataaaagagtgagtgt 27243082  T
Q  228 gagagataatgttcaaaagtgagtattgcta 258  Q
     ||||| | |||||||||| |||| ||||||    
T  27243081 tagagagagtgttcaaaagagagtgttgcta 27243051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 20791432 - 20791343
Alignment:
Q  128 ttctcattggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    |||| ||||||||||||||||| |   ||| |||||||||||| ||| | || ||| |||||| ||||||||||||| |||| |||||||    
T  20791432 ttcttattggtttaaatcattgcggatctacactttggaaatagaactcgcataaagtggtgggacatacattgatttcatccaataaaa 20791343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 264
Target Start/End: Original strand, 24748985 - 24749090
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgcta 258  Q
    ||||| |||||  |||||||| |||||||||| ||||||||||||  || |  ||||||||||||||   ||||| |  ||||||||| || ||||||||    
T  24748985 actttagaaatggaacccacataaaatggtgggacatacattgatatcaccccataaaagaatgagtgttagagagagcgttcaaaagagaatattgcta 24749084  T
Q  259 acattt 264  Q
    ||||||    
T  24749085 acattt 24749090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 2419508 - 2419596
Alignment:
Q  128 ttctcattggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaa 216  Q
    |||| ||||||||||||||||||| | ||| || ||||||||| ||| ||  |||| |||| | |||| ||||||||||||| ||||||    
T  2419508 ttcttattggtttaaatcattgtgggtctacacattggaaatagaactcatgcaaagtggtaggacatgcattgattccatccaataaa 2419596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 120
Target Start/End: Complemental strand, 24734884 - 24734816
Alignment:
Q  52 tgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtggg 120  Q
    ||||| |||||||||||| |||| | | ||||||||  |||| ||||||||| ||||||||||||||||    
T  24734884 tgctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtggg 24734816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 41451896 - 41451964
Alignment:
Q  52 tgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtggg 120  Q
    ||||| |||||||||||| |||| | | ||||||||  |||| ||||||||| ||||||||||||||||    
T  41451896 tgctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtggg 41451964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 195
Target Start/End: Complemental strand, 752519 - 752461
Alignment:
Q  137 gtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacat 195  Q
    ||||||||||||||| | ||| ||||| |||||| |||||||||||| |||||| ||||    
T  752519 gtttaaatcattgtgggtctacactttagaaatagaacccacacaaagtggtgggacat 752461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 28529427 - 28529353
Alignment:
Q  55 taacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgggactatactt 129  Q
    ||||||||||||||| |||| |   ||||||||  |||| ||||||||| |||||||||||||||| ||| ||||    
T  28529427 taacaacactctcttttgaacaccctctctaatactcactctcttattggtttaaatcattgtgggtctacactt 28529353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Original strand, 21232610 - 21232663
Alignment:
Q  172 aacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    |||||||| ||| |||||||||||||||||||| || | ||||||| |||||||    
T  21232610 aacccacataaagtggtggaacatacattgatttcacccaataaaaaaatgagt 21232663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 135 - 204
Target Start/End: Original strand, 41707490 - 41707559
Alignment:
Q  135 tggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgatt 204  Q
    |||||||||| |||||| | |||||||||  ||||  |||||||||||| || || ||||||||||||||    
T  41707490 tggtttaaattattgtgggtctatactttaaaaattgaacccacacaaagtgatgaaacatacattgatt 41707559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 49418426 - 49418479
Alignment:
Q  58 caacactctcttatgaatattttctctaattttcacactcttattgatttaaat 111  Q
    |||||||||||| |||| ||| |||||| | ||||| |||||||||||||||||    
T  49418426 caacactctcttttgaacattctctctagtattcactctcttattgatttaaat 49418479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 52123957 - 52124034
Alignment:
Q  52 tgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgggactatactt 129  Q
    ||||| |||||||||||| |||| | | ||||||||  ||||  |||||||| |||||||||||||||| ||| ||||    
T  52123957 tgctagcaacactctcttttgaacactctctctaatactcactttcttattggtttaaatcattgtgggtctacactt 52124034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 22604687 - 22604599
Alignment:
Q  137 gtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    ||||||||||||||||| ||| | |||| ||||  ||| | ||||||||||||| ||||||||| |||  ||| |||||| || |||||    
T  22604687 gtttaaatcattgtgagtctacattttgaaaattgaactcccacaaaatggtgggacatacattaattttatccaataaatgagtgagt 22604599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 116
Target Start/End: Complemental strand, 39186147 - 39186079
Alignment:
Q  48 gtagtgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattg 116  Q
    ||||||||| |||||||||||| |||||| | |||| |||   | | ||||||||||||||||||||||    
T  39186147 gtagtgctatcaacactctcttttgaatactctctccaataccctctctcttattgatttaaatcattg 39186079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 33008235 - 33008100
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| | ||| || ||||||||| |||||||||||| |||||| ||||||| ||||| |||| ||||||||| ||||| | ||||    
T  33008235 attggtttaaatcattgtgggtctacacattggaaatagaacccacacaaagtggtgggacatacaatgatttcatccaataaaagagtgagtgctagag 33008136  T
Q  233 ataatgttcaaaagtgagtattgctaacatttctca 268  Q
    ||| ||||||||||||||| |||||| |||| ||||    
T  33008135 atagtgttcaaaagtgagtgttgctagcattcctca 33008100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 263
Target Start/End: Original strand, 31502513 - 31502643
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||||| ||| |||||| ||||  ||| ||||||||||||||| |||||| |||||| |||| ||||||||| |||||   ||||    
T  31502513 attggtttaaatcattgtgagtctacactttgaaaattgaacgcacacaaaatggtgggacataccttgatttcatccaataaaagagtgagtgttagag 31502612  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
    | | |||| |||||||||| |||||| ||||    
T  31502613 agactgttgaaaagtgagtgttgctagcatt 31502643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 269
Target Start/End: Complemental strand, 11824207 - 11824066
Alignment:
Q  128 ttctcattggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtac 227  Q
    |||| |||| |||||||||||||| |  || |||||| ||||  || | |||||||||||||| ||||||||||||| |||| ||||||||| ||||| |    
T  11824207 ttcttattgatttaaatcattgtgggtttacactttgaaaattgaagctacacaaaatggtgggacatacattgatttcatccaataaaagagtgagtgc 11824108  T
Q  228 gagagataatgttcaaaagtgagtattgctaacatttctcat 269  Q
     ||||| |  ||| |||| ||||| |||||||||||||||||    
T  11824107 tagagagagcgttgaaaaatgagtgttgctaacatttctcat 11824066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 58 - 189
Target Start/End: Original strand, 36845498 - 36845627
Alignment:
Q  58 caacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgggactatacttctcattggtttaaatcattgtgagacta 157  Q
    ||||||||| || |||||| | |||  ||| ||||| ||||||||| |||||||||||||||| ||| |  ||| ||||||||||||||||||| | |||    
T  36845498 caacactctattttgaatactctctagaatattcactctcttattggtttaaatcattgtgggtctaca--tcttattggtttaaatcattgtgggtcta 36845595  T
Q  158 tactttggaaatataacccacacaaaatggtg 189  Q
    ||||||| ||||  |||||||||||| |||||    
T  36845596 tactttgaaaattgaacccacacaaattggtg 36845627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 137 - 263
Target Start/End: Complemental strand, 32205203 - 32205080
Alignment:
Q  137 gtttaaatcattgtgagac-tatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagata 235  Q
    |||||||||||||| |||| ||||||||  ||||  ||||||||||||||||| | ||||||||||||| |||| ||||||||| |||||   ||||| |    
T  32205203 gtttaaatcattgt-agacctatactttaaaaattgaacccacacaaaatggtaggacatacattgatttcatccaataaaagagtgagt---agagaga 32205108  T
Q  236 atgttcaaaagtgagtattgctaacatt 263  Q
     ||||||||||||||| |||||| ||||    
T  32205107 gtgttcaaaagtgagtgttgctagcatt 32205080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 22190070 - 22189934
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||| | | ||| |||||| ||||  |||||||||||| ||||||  |||||||||||| |||| ||||||||| ||||| | ||||    
T  22190070 attggtttaaatcattgcgggtctacactttgaaaattgaacccacacaaagtggtgggccatacattgatttcatccaataaaagagtgagtgctagag 22189971  T
Q  233 ataatgttcaaaagtgagtattgctaacatttctcat 269  Q
    | | |||| |||| ||||| || ||| |||| |||||    
T  22189970 agagtgttgaaaaatgagtgtttctagcattcctcat 22189934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 6442296 - 6442161
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| | ||| |||||| ||||  || || ||||||||||||||||||||||||||| |||  |||||| || |||||   ||||    
T  6442296 attggtttaaatcattgtgggtctacactttgaaaattgaatccccacaaaatggtggaacatacattgatttcatacaataaatgactgagtgatagag 6442197  T
Q  233 ataatgttcaaaagtgagtattgctaacatttctca 268  Q
    | | |||| |||| ||||| ||| ||||||| ||||    
T  6442196 agagtgttgaaaaatgagtgttgttaacattcctca 6442161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 225
Target Start/End: Original strand, 17354602 - 17354668
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    |||||||||||| |||||||| ||| |||||| ||||||||||||| |||| |||||||||||||||    
T  17354602 actttggaaatagaacccacataaagtggtgggacatacattgatttcatccaataaaagaatgagt 17354668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 263
Target Start/End: Original strand, 48374489 - 48374616
Alignment:
Q  134 ttggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagaga 233  Q
    ||||||||||| ||||||||  || |||||||||||| |||||| | ||| |||||| |||| |||  |||||||  ||||||||| ||||||| ||||     
T  48374489 ttggtttaaattattgtgagtatacactttggaaatagaacccatagaaagtggtgggacatgcatgaattccattcaataaaagagtgagtactagag- 48374587  T
Q  234 taatgttcaaaagtgagtattgctaacatt 263  Q
     | ||||||||||||||| |||||| ||||    
T  48374588 -agtgttcaaaagtgagtgttgctagcatt 48374616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 46517422 - 46517294
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||||| ||| |||||| ||||  ||||| |||| |||||||| | |||||||||||  ||| |||||| || ||||| | ||||    
T  46517422 attggtttaaatcattgtgagtctacactttgaaaattgaacccccacagaatggtgggatatacattgattttatccaataaatgagtgagtgctagag 46517323  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
      | |||| |||||||||| |||||| ||||    
T  46517322 --agtgttaaaaagtgagtgttgctagcatt 46517294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 9649055 - 9648984
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgatt 204  Q
    ||||||||||||||||||| |  || || ||||||| | ||||| |||||| ||||||||||||||||||||    
T  9649055 attggtttaaatcattgtgggtatacacattggaaacagaacccgcacaaagtggtggaacatacattgatt 9648984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 27888413 - 27888342
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgatt 204  Q
    ||||||||||||||||||| | ||| |||||  ||||  |||||||||||| |||||| |||||||||||||    
T  27888413 attggtttaaatcattgtgggtctacactttaaaaattgaacccacacaaagtggtgggacatacattgatt 27888342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 251
Target Start/End: Complemental strand, 7459474 - 7459356
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||||||||||| ||||||   ||||| |||| ||||  | | |||| ||| |||||||| |||||||||||  ||| ||||||||||||||||  | ||    
T  7459474 attggtttaaattattgtggatctatattttgaaaattgagctcacataaagtggtggaatatacattgattttatcgaataaaagaatgagtattatag 7459375  T
Q  233 ataatgttcaaaagtgagt 251  Q
    | |||||| ||||||||||    
T  7459374 agaatgttaaaaagtgagt 7459356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 12263485 - 12263571
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    ||||||||||||||||||| | ||| |||||| ||||  | || ||||||| || ||| ||||||||||||||||||  ||||||||    
T  12263485 attggtttaaatcattgtgggtctacactttgaaaattgatcctacacaaagtgatgggacatacattgattccatccgataaaaga 12263571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 22786256 - 22786152
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgcta 258  Q
    |||||||||||  |||||||| ||| |||||  ||||||||||||| || ||||||||| | ||||| | ||||| | || ||||||| |||| ||||||    
T  22786256 actttggaaatggaacccacataaagtggtgagacatacattgatttcacctaataaaaaagtgagtgctagagagagtgctcaaaagagagtgttgcta 22786157  T
Q  259 acatt 263  Q
     ||||    
T  22786156 gcatt 22786152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 25428554 - 25428622
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtac 227  Q
    ||||||||||| ||||||||| ||| |||||| ||||||||||||| ||   ||||||||| |||||||    
T  25428554 actttggaaatgtaacccacataaagtggtgggacatacattgatttcacacaataaaagagtgagtac 25428622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 7775105 - 7775039
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    |||||| ||||  ||| |||||||| |||||| ||||||||||||| |||| ||||||||| |||||    
T  7775105 actttgaaaattgaactcacacaaagtggtgggacatacattgatttcatccaataaaagagtgagt 7775039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 223
Target Start/End: Original strand, 10934018 - 10934104
Alignment:
Q  137 gtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatga 223  Q
    ||||||||||||||| |  ||||||||||||||| || ||| ||||| |||||  ||||| ||| |||  ||| |||||||||||||    
T  10934018 gtttaaatcattgtgggtttatactttggaaatagaaaccatacaaagtggtgagacatatattaattttatccaataaaagaatga 10934104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 11692306 - 11692224
Alignment:
Q  137 gtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    |||||||||| ||||||  || |||||| ||||  |||| ||||||| |||| | ||||||||||||| |||| |||||||||    
T  11692306 gtttaaatcactgtgagtttacactttgaaaattgaacctacacaaagtggtaggacatacattgatttcatccaataaaaga 11692224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 120
Target Start/End: Complemental strand, 11824257 - 11824182
Alignment:
Q  43 aatgggtagtgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtggg 120  Q
    |||| ||| |||||||||||||||||| |||| | |  |||||||  ||||  |||||||||||||||||||||||||    
T  11824257 aatgagtaatgctaacaacactctcttttgaacact--ctctaatactcactttcttattgatttaaatcattgtggg 11824182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 19494414 - 19494488
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagaga 233  Q
    |||||| ||||  |||||||| ||| |||||| ||||||||||||| || | ||||||||| ||||||| |||||    
T  19494414 actttgaaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtactagaga 19494488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 268
Target Start/End: Complemental strand, 13919885 - 13919776
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgcta 258  Q
    |||||| ||||  |||||||| ||| |||||| ||||||||||||| || | |||||| ||  |||| | ||||| | || ||||||| |||| ||||||    
T  13919885 actttgaaaatggaacccacataaagtggtgggacatacattgatttcacccaataaatgagcgagtgctagagagagtgctcaaaagagagtgttgcta 13919786  T
Q  259 acatttctca 268  Q
     |||||||||    
T  13919785 gcatttctca 13919776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 263
Target Start/End: Original strand, 19422936 - 19423013
Alignment:
Q  186 ggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgctaacatt 263  Q
    ||||| ||||||||||||| |||| ||| ||||| |||||   ||||| | |||| |||||||||| |||||||||||    
T  19422936 ggtgggacatacattgatttcatccaatgaaagagtgagtgatagagagagtgttgaaaagtgagtgttgctaacatt 19423013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 27949452 - 27949375
Alignment:
Q  52 tgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgggactatactt 129  Q
    ||||| |||||||||||| |||| | | ||||||||  |||| ||||||||  |||||||||||||||| ||| ||||    
T  27949452 tgctagcaacactctcttttgaacactctctctaatactcactctcttattagtttaaatcattgtgggtctacactt 27949375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 6580003 - 6580071
Alignment:
Q  52 tgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtggg 120  Q
    ||||| |||||||||||| |||| | | ||||||||  |||| ||||||||| ||||||| ||||||||    
T  6580003 tgctaccaacactctcttttgaacactctctctaatactcactctcttattggtttaaattattgtggg 6580071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 12271075 - 12271031
Alignment:
Q  175 ccacacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    ||||||||| |||||| ||||||||||||| ||||| ||||||||    
T  12271075 ccacacaaagtggtgggacatacattgatttcatctgataaaaga 12271031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 25686884 - 25686968
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    ||||||||||||||||||| | ||| |||||| ||||  |||||| | ||| ||||   ||||||||||||| |||| |||||||    
T  25686884 attggtttaaatcattgtgggtctacactttgaaaattgaacccataaaaagtggtatgacatacattgatttcatcaaataaaa 25686968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 263
Target Start/End: Original strand, 20225390 - 20225518
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||||| ||| |||||||||||| |||||||| ||| |||||| |||| ||| ||||||||| ||||||||| ||||| | ||||    
T  20225390 attggtttaaatcattgtgagtctacactttggaaatagaacccacaaaaagtggtgggacatgcatggattccatccaataaaagagtgagtgctagag 20225489  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
      | ||||||||||||||| |||||| ||||    
T  20225490 --agtgttcaaaagtgagtgttgctagcatt 20225518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 43771257 - 43771127
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| | ||| |||||| ||||  |||||||||| | |||||| ||||||||||||| |||| ||||||||| |||||   ||||    
T  43771257 attggtttaaatcattgtgggtctacactttgaaaattgaacccacacagagtggtgggacatacattgatttcatccaataaaagagtgagtcatagag 43771158  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
    | | ||||||||||||||| |||||| ||||    
T  43771157 agagtgttcaaaagtgagtgttgctaccatt 43771127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 133 - 263
Target Start/End: Original strand, 45081791 - 45081921
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||||||||||| ||||||||  || ||||||||||||  |||||||||||||||| |||||| |||  |||||||| ||||||||||| ||| | | |     
T  45081791 attggtttaaattattgtgagtgtacactttggaaataggacccacacaaaatggtagaacatgcatgtattccatcaaataaaagaataagtgctaaaa 45081890  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
    | |||||||||||| || | |||||||||||    
T  45081891 agaatgttcaaaagagaatgttgctaacatt 45081921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 128 - 269
Target Start/End: Complemental strand, 8109092 - 8108951
Alignment:
Q  128 ttctcattggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtac 227  Q
    |||| ||||||||||||||||||| | ||| |||||| ||||  |||  ||||||| | |||| ||||||||||||| || | ||||||||| ||||| |    
T  8109092 ttcttattggtttaaatcattgtgggtctacactttgaaaattgaacaaacacaaattagtgggacatacattgatttcacccaataaaagagtgagtgc 8108993  T
Q  228 gagagataatgttcaaaagtgagtattgctaacatttctcat 269  Q
     ||||| | |||| |||||||||| |||||| ||||||||||    
T  8108992 tagagagagtgttgaaaagtgagtgttgctagcatttctcat 8108951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 24834709 - 24834625
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    |||||||||||| |||||| | ||| |||||| ||||  ||||||||||||||||||| |||||||||||||||||| |||||||    
T  24834709 attggtttaaattattgtgggtctacactttgaaaattgaacccacacaaaatggtgggacatacattgattccatccaataaaa 24834625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 133 - 277
Target Start/End: Complemental strand, 49077380 - 49077236
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| | ||| |||||  ||||  |||||||||||| |||||| ||||| ||| |||  ||||||||||||||||||| | | ||    
T  49077380 attggtttaaatcattgtgggtctacactttaaaaattgaacccacacaaagtggtgggacatatattaattttatctaataaaagaatgagtgctaaag 49077281  T
Q  233 ataatgttcaaaagtgagtattgctaacatttctcatcttaaata 277  Q
    | |||||| |||| ||||| |||||| |||| |||| || |||||    
T  49077280 agaatgttgaaaactgagtgttgctagcattcctcaactaaaata 49077236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 251
Target Start/End: Complemental strand, 50164531 - 50164408
Alignment:
Q  128 ttctcattggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtac 227  Q
    |||| ||||||||||||||||||||| ||| |||||| ||||  ||||| ||||||||||||| | |||||||||||  ||| |||||| || ||||| |    
T  50164531 ttcttattggtttaaatcattgtgagtctacactttgaaaattgaacccccacaaaatggtgggagatacattgattttatccaataaatgagtgagtgc 50164432  T
Q  228 gagagataatgttcaaaagtgagt 251  Q
     ||||| | |||| ||||||||||    
T  50164431 tagagagagtgttaaaaagtgagt 50164408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 219
Target Start/End: Complemental strand, 22542508 - 22542426
Alignment:
Q  137 gtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    ||||||||||||||| |||||| ||||| ||||  |||||||||||| ||||||||||||| |||||| |||  |||||||||    
T  22542508 gtttaaatcattgtgggactattctttgaaaattgaacccacacaaagtggtggaacatactttgatttcattcaataaaaga 22542426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 39471288 - 39471202
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    ||||||||||||||||||| | ||| |||||| | ||  |||| ||||||| |||||| ||||||||||||| ||||||||||||||    
T  39471288 attggtttaaatcattgtgggtctacactttgaagattgaaccaacacaaagtggtgggacatacattgatttcatctaataaaaga 39471202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 22592406 - 22592318
Alignment:
Q  162 ttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgag 250  Q
    ||||||||| |||| ||||||| |||||| ||| ||||| ||| |||| ||||||||| ||||| | ||||| ||||||||||||||||    
T  22592406 ttggaaatagaacctacacaaagtggtgggacaaacatttatttcatccaataaaagagtgagtgccagagagaatgttcaaaagtgag 22592318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 175 - 267
Target Start/End: Complemental strand, 43958240 - 43958148
Alignment:
Q  175 ccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgctaacatttctc 267  Q
    ||||| |||||||||| |||||||||||||| ||  ||||||||| ||| | | ||||| |||||| |||| ||||| |||||||||||||||    
T  43958240 ccacataaaatggtgggacatacattgattctattcaataaaagagtgaatgctagagagaatgttaaaaactgagtgttgctaacatttctc 43958148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 39471336 - 39471259
Alignment:
Q  52 tgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgggactatactt 129  Q
    |||||||||||||||||| | || ||| ||||||||  |||| ||||||||| |||||||||||||||| ||| ||||    
T  39471336 tgctaacaacactctcttttaaacattctctctaatactcactctcttattggtttaaatcattgtgggtctacactt 39471259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 24938464 - 24938556
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    ||||||||||||||||||  | ||| |||||  ||||  || ||| |||||||||||| ||||||||||||| |||| ||||||||| |||||    
T  24938464 attggtttaaatcattgtaggtctacactttaaaaattgaatccaaacaaaatggtgggacatacattgattacatccaataaaagagtgagt 24938556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 13520080 - 13520009
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgatt 204  Q
    ||||||||||||||||||| |  || || ||||||| | ||||| |||||| ||||||||||||||||||||    
T  13520080 attggtttaaatcattgtgggtatacacattggaaacagaacccgcacaaagtggtggaacatacattgatt 13520009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 263
Target Start/End: Original strand, 33653533 - 33653668
Alignment:
Q  128 ttctcattggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtac 227  Q
    |||| |||||||||||||||||||   | ||| |||| ||||  || || ||||||||||||| ||||||||||||| |||| |||||| || ||| ||     
T  33653533 ttcttattggtttaaatcattgtggatcaatattttgaaaattgaaaccccacaaaatggtgggacatacattgatttcatcaaataaatgagtgattaa 33653632  T
Q  228 gagagataatgttcaaaagtgagtattgctaacatt 263  Q
     ||||| | |||| |||| ||||| |||||| ||||    
T  33653633 tagagagagtgttgaaaactgagtgttgctagcatt 33653668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 26361357 - 26361443
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    |||||||||||||||| || | ||| |||||| | ||  |||||||||||||||||||  |||||||||| | |||| |||||||||    
T  26361357 attggtttaaatcattatgggtctacactttgaatattgaacccacacaaaatggtgggtcatacattgacttcatccaataaaaga 26361443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 264
Target Start/End: Original strand, 46242000 - 46242122
Alignment:
Q  140 taaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgt 239  Q
    |||||||||||| | ||||| |||| ||||  |||| |||||||||||||| ||||||| ||||| ||||  |||||||  ||||| | ||||  | |||    
T  46242000 taaatcattgtgggtctatattttgaaaattgaacctacacaaaatggtgggacatacaatgatttcatcccataaaagtgtgagttctagag--agtgt 46242097  T
Q  240 tcaaaagtgagtattgctaacattt 264  Q
    | |||||||||| ||| ||||||||    
T  46242098 taaaaagtgagtgttgataacattt 46242122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 29699619 - 29699528
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    |||| |||||||||||||  | ||||||||| |||||| |||| ||||||| |||||| ||||  ||||||| |||| ||||||||| |||||    
T  29699619 attgttttaaatcattgtcgggctatacttt-gaaatagaaccaacacaaagtggtgggacatgtattgatttcatccaataaaagagtgagt 29699528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 50481594 - 50481686
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    |||||||||||| |||||| | ||| |||||| ||||| || ||| ||||| |||||  |||||| |||||| |||| ||||||||| |||||    
T  50481594 attggtttaaatgattgtgtgtctacactttgaaaatagaaaccatacaaagtggtgagacatactttgatttcatccaataaaagagtgagt 50481686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 249
Target Start/End: Complemental strand, 50879559 - 50879471
Alignment:
Q  161 tttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtga 249  Q
    |||||||||| |||||||| |||||||||| |||| |||  |||||||  ||||||||| ||||| | ||| | | |||||||||||||    
T  50879559 tttggaaatagaacccacataaaatggtgggacatgcatgaattccattcaataaaagagtgagtgctagaaagagtgttcaaaagtga 50879471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 4138996 - 4138913
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaa 216  Q
    |||| ||||||| |||| ||| ||| |||||||||||| || ||| | || ||||||| ||||||||||||| |||| ||||||    
T  4138996 attgatttaaattattgcgagtctacactttggaaatagaatccataaaatatggtgggacatacattgatttcatccaataaa 4138913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 217
Target Start/End: Complemental strand, 39016773 - 39016710
Alignment:
Q  154 actatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    |||| |||||||||||  |||||||  |||||||||| ||||||||||||| |||| |||||||    
T  39016773 actacactttggaaatggaacccacgtaaaatggtgggacatacattgatttcatccaataaaa 39016710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 48339389 - 48339460
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgatt 204  Q
    ||||||||||| |||| || | |||  ||||| ||||  |||||||||||| ||||||||||||||||||||    
T  48339389 attggtttaaagcattatgggtctacgctttgaaaattgaacccacacaaagtggtggaacatacattgatt 48339460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 193 - 272
Target Start/End: Complemental strand, 50571935 - 50571856
Alignment:
Q  193 catacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgctaacatttctcatctt 272  Q
    |||||||||||| |||||||||||||| | ||| | ||||| | |||| |||||||| | ||||||||||| ||| ||||    
T  50571935 catacattgatttcatctaataaaagagtaagtgctagagagagtgttgaaaagtgactgttgctaacattcctcttctt 50571856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 13070045 - 13069936
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgcta 258  Q
    |||||| ||||  |||||||| ||| |||||||||||||||||||| || | ||||||||| ||||| | |||||   || ||||||| ||||||| |||    
T  13070045 actttgaaaatggaacccacataaagtggtggaacatacattgatttca-ccaataaaagagtgagtgctagagagtgtgctcaaaagagagtattccta 13069947  T
Q  259 acatttctcat 269  Q
     |||| |||||    
T  13069946 gcattcctcat 13069936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 263
Target Start/End: Original strand, 34129449 - 34129579
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||| ||||||||| | | |||||| ||||  ||| |||||||| |||||| | ||||||||||  |||| |||| |||| ||||| | ||||    
T  34129449 attggtttaaaccattgtgagtccacactttgaaaattgaacacacacaaagtggtgggatatacattgatctcatccaatagaagagtgagtgctagag 34129548  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
    | | | || |||||||| | |||||| ||||    
T  34129549 agagttttgaaaagtgaatgttgctaccatt 34129579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 8109135 - 8109058
Alignment:
Q  52 tgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgggactatactt 129  Q
    ||||| |||||||||||| |||| | | ||||||||  ||||  |||||||| |||||||||||||||| ||| ||||    
T  8109135 tgctagcaacactctcttttgaacactctctctaatactcactttcttattggtttaaatcattgtgggtctacactt 8109058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 258
Target Start/End: Complemental strand, 20454669 - 20454546
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||| ||||||||||||||   ||| |||||| ||||  |||| ||||||| || |||| ||||||||||||  ||||||||||||| ||||| | ||||    
T  20454669 attgatttaaatcattgtggatctacactttgaaaattgaaccaacacaaagtg-tgga-catacattgattttatctaataaaagagtgagtgctagag 20454572  T
Q  233 ataatgttcaaaagtgagtattgcta 258  Q
    | | |||| |||||| ||| ||||||    
T  20454571 agagtgttgaaaagtaagtgttgcta 20454546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 722288 - 722204
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    ||||||||||||||||||| | ||| |||||  ||||  |||  ||||||| |||||| |||||| |||||| |||| |||||||    
T  722288 attggtttaaatcattgtgggtctacactttaaaaattgaacttacacaaagtggtgggacatactttgatttcatccaataaaa 722204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 129
Target Start/End: Complemental strand, 722331 - 722259
Alignment:
Q  57 acaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgggactatactt 129  Q
    |||||||| |||| |||| | | ||||||||  |||| ||||||||| |||||||||||||||| ||| ||||    
T  722331 acaacactttcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctacactt 722259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 267
Target Start/End: Original strand, 1559812 - 1559900
Alignment:
Q  179 acaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgctaacatttctc 267  Q
    ||||| |||||| |||||| ||||||||||  |||||| || ||||| | | ||| | ||| ||||||||||| ||||||| |||||||    
T  1559812 acaaattggtgggacatacgttgattccattcaataaaggagtgagtgctaaagagagtgtacaaaagtgagtgttgctaatatttctc 1559900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 39016777 - 39016849
Alignment:
Q  195 tacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgctaacatttctc 267  Q
    ||||||||||  | ||||||||||| | ||| | ||||| | |||||||||| |||| |||||||||||||||    
T  39016777 tacattgattttacctaataaaagagtaagtgctagagagagtgttcaaaagagagtgttgctaacatttctc 39016849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 49242301 - 49242225
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatc 209  Q
    ||||||||||||||||||||  ||| || ||| ||||  |||||||||||| || ||| ||||| ||||||| ||||    
T  49242301 attggtttaaatcattgtgaatctacacattgaaaattgaacccacacaaagtgatgggacatatattgatttcatc 49242225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 27943 - 27858
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaag 218  Q
    ||||||||||||||||||| | ||| |||||||||||| |||||||||||| |||||| |||||||||||||||||| ||||||||    
T  27943 attggtttaaatcattgtgggtctacactttggaaatagaacccacacaaagtggtgggacatacattgattccatccaataaaag 27858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 27995 - 27914
Alignment:
Q  48 gtagtgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgggactatactt 129  Q
    ||||||||| |||||| ||||| |||| | | ||| ||||  |||| ||||||||| |||||||||||||||| ||| ||||    
T  27995 gtagtgctagcaacaccctcttttgaacactctctttaatactcactctcttattggtttaaatcattgtgggtctacactt 27914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 445949 - 445813
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||||  ||| |||||| ||||  |||||||||||| |||||  ||||||||||||| |||| ||||||| | ||||| | ||||    
T  445949 attggtttaaatcattgtgactctagactttgaaaattgaacccacacaaagtggtgtgacatacattgatttcatccaataaaaaagtgagtgctagag 445850  T
Q  233 ataatgttcaaaagtgagtattgctaacatttctcat 269  Q
    ||| |||| |||| |||||||||||| |||| |||||    
T  445849 atagtgttgaaaaatgagtattgctagcattcctcat 445813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 133 - 267
Target Start/End: Complemental strand, 34905467 - 34905333
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| | ||| |||||| ||||  |||||| ||||| |||||| ||||||||||||| |||| ||||||||| |||||   ||||    
T  34905467 attggtttaaatcattgtgggtctacactttgaaaattgaacccaaacaaagtggtgggacatacattgatttcatccaataaaagagtgagtgttagag 34905368  T
Q  233 ataatgttcaaaagtgagtattgctaacatttctc 267  Q
    | | |||| |||| ||||| |||||| ||||||||    
T  34905367 agagtgttgaaaaatgagtgttgctagcatttctc 34905333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 256
Target Start/End: Original strand, 31116173 - 31116296
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| |  || || ||||||||| ||| |||||||| | |||| ||||||||||||| |||| |||| |||| ||| |   ||||    
T  31116173 attggtttaaatcattgtgggtttacacattggaaatagaacacacacaaagtagtgggacatacattgatttcatccaatagaagagtgaatgttagag 31116272  T
Q  233 ataatgttcaaaagtgagtattgc 256  Q
    | | ||||||||||||||| ||||    
T  31116273 agagtgttcaaaagtgagtgttgc 31116296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 225
Target Start/End: Complemental strand, 31444085 - 31443998
Alignment:
Q  138 tttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    |||||||| ||||||| | | |||||| ||||  |||| |||||||||||||||||||| ||| ||| |||| |||||||||||||||    
T  31444085 tttaaatccttgtgagtcaacactttgaaaattgaaccgacacaaaatggtggaacataaattaatttcatccaataaaagaatgagt 31443998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 12327278 - 12327340
Alignment:
Q  157 atactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    |||| ||||||||| ||||||||||||||||| | |||||||||||||| ||| |||||||||    
T  12327278 atacattggaaatagaacccacacaaaatggtaggacatacattgattctatccaataaaaga 12327340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 219
Target Start/End: Original strand, 32598997 - 32599083
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    |||| |||||||||||||||  ||| ||||||||||||  ||||||||||| ||| || ||||||||  |||||||| |||||||||    
T  32598997 attgatttaaatcattgtgaatctacactttggaaatagcacccacacaaagtggcgggacatacatgtattccatccaataaaaga 32599083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 17144724 - 17144804
Alignment:
Q  137 gtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    ||||||||||||||| | ||| |||||| |||| ||||| |||||||| ||||||||||| ||||||| |||  |||||||    
T  17144724 gtttaaatcattgtgggtctacactttgaaaatttaacctacacaaaacggtggaacatatattgatttcattcaataaaa 17144804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 59 - 119
Target Start/End: Original strand, 32112725 - 32112785
Alignment:
Q  59 aacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgg 119  Q
    ||||||||||| |||| ||| |||||||| ||||| ||||||||| |||||||||||||||    
T  32112725 aacactctcttttgaacattctctctaatattcactctcttattgttttaaatcattgtgg 32112785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 32112766 - 32112850
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    |||| ||||||||||||||   ||| |||||| ||||| ||||||||||||||||||  |||| |||||||| |||| |||||||    
T  32112766 attgttttaaatcattgtggatctacactttgaaaataaaacccacacaaaatggtgtgacatgcattgatttcatccaataaaa 32112850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 216
Target Start/End: Original strand, 16852022 - 16852105
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaa 216  Q
    ||||||||||||||||||| | ||| |||||| ||||  |||||  ||||| |||||| ||||||||| ||| |||||||||||    
T  16852022 attggtttaaatcattgtgggtctacactttgaaaattgaacccctacaaagtggtgggacatacatttatttcatctaataaa 16852105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 219
Target Start/End: Complemental strand, 16436195 - 16436110
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    ||||||||||||| || || | ||| ||||| |||||| |||||||||||||||||||  |||||||||||| ||| |||| |||||    
T  16436195 attggtttaaatctttttgggtctacactttagaaatagaacccacacaaaatggtgg-gcatacattgatttcatataatgaaaga 16436110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 12780808 - 12780892
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    |||||||||||||||||||   ||| |||||| ||||  |||| ||||||| | |||  |||||||||||||||| |||||||||    
T  12780808 attggtttaaatcattgtggatctacactttgaaaattgaaccaacacaaagtagtgagacatacattgattccacctaataaaa 12780892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 32122926 - 32122843
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaa 216  Q
    ||||| ||||||||||||| | ||| |||||| ||||  ||| | ||||||||||||| ||||| ||||||| |||| ||||||    
T  32122926 attggcttaaatcattgtgggtctacactttgaaaattgaactcccacaaaatggtgggacatatattgatttcatccaataaa 32122843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 251
Target Start/End: Complemental strand, 5106429 - 5106311
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||| ||||| |  || |||||| ||||  | |||||||||| |||||| |||||||||||||  ||| ||||||| | |||||   ||||    
T  5106429 attggtttaaatccttgtgggtgtacactttgaaaattgatcccacacaaagtggtgggacatacattgattttatccaataaaaaagtgagtgttagag 5106330  T
Q  233 ataatgttcaaaagtgagt 251  Q
    | | |||| ||||||||||    
T  5106329 aaagtgttgaaaagtgagt 5106311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 21987428 - 21987339
Alignment:
Q  128 ttctcattggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    |||| ||||||||||||||||| |   ||| |||||||||||| ||| | || ||| |||||| | ||||||||||| |||| |||||||    
T  21987428 ttcttattggtttaaatcattgcggatctacactttggaaatagaactcgcataaagtggtgggatatacattgatttcatccaataaaa 21987339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 34905515 - 34905438
Alignment:
Q  52 tgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgggactatactt 129  Q
    ||||| |||||||||||| |||| |   ||||||||  |||| ||||||||| |||||||||||||||| ||| ||||    
T  34905515 tgctagcaacactctcttttgaacaccctctctaatactcactctcttattggtttaaatcattgtgggtctacactt 34905438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 268
Target Start/End: Original strand, 35128798 - 35128907
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgcta 258  Q
    |||||| ||||  |||||||| ||| |||||| |||||||||||||  | | ||||||||| ||| | | ||||| | |||||||||| |||| ||||||    
T  35128798 actttgaaaatggaacccacataaagtggtgggacatacattgattttacccaataaaagagtgactgctagagagagtgttcaaaagagagtgttgcta 35128897  T
Q  259 acatttctca 268  Q
     || ||||||    
T  35128898 gcacttctca 35128907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 19090290 - 19090350
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    |||||||||||  |||||||| ||| |||||| ||||||||||||| || | |||||||||    
T  19090290 actttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaaga 19090350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 26767810 - 26767946
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||||| ||| | |||| ||||  ||||| |||||| |||||| ||||||||||||| |||| | ||||||| | ||| | ||||    
T  26767810 attggtttaaatcattgtgagtctacaatttgaaaattgaaccctcacaaagtggtgggacatacattgatttcatccagtaaaagagtaagtgctagag 26767909  T
Q  233 ataatgttcaaaagtgagtattgctaacatttctcat 269  Q
    | |||||| |||||||||| |||||| |||| |||||    
T  26767910 agaatgttgaaaagtgagtgttgctagcattcctcat 26767946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 133 - 267
Target Start/End: Complemental strand, 9470212 - 9470078
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| | ||| |||||| ||||  |||||| ||||| |||||| ||||||||||||| |||| ||||||||| |||||   ||||    
T  9470212 attggtttaaatcattgtgggtctacactttgaaaattgaacccaaacaaagtggtgggacatacattgatttcatccaataaaagagtgagtgttagag 9470113  T
Q  233 ataatgttcaaaagtgagtattgctaacatttctc 267  Q
    | |  ||| |||| |||||||||||| ||||||||    
T  9470112 agagcgttgaaaaatgagtattgctagcatttctc 9470078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 30718376 - 30718493
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||||| ||| |||||| ||||| || |||||||||||| ||| ||||| || |||| |||| ||||||||| ||||||| ||||    
T  30718376 attggtttaaatcattgtgagtctacactttgaaaatacaatccacacaaaatgatgg-acatatatcgatttcatccaataaaagagtgagtactagag 30718474  T
Q  233 ataatgttcaaaagtgagt 251  Q
    | |||||| |||| |||||    
T  30718475 agaatgtttaaaattgagt 30718493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 133 - 269
Target Start/End: Complemental strand, 12989322 - 12989186
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| | ||| |||| ||||||| || ||| ||||| |||||| ||||||||||||| |||| ||| ||||| |||||  || ||    
T  12989322 attggtttaaatcattgtgggtctacacttcggaaatagaatccatacaaagtggtgggacatacattgatttcatccaatgaaagagtgagtgagaaag 12989223  T
Q  233 ataatgttcaaaagtgagtattgctaacatttctcat 269  Q
    | | |||| |||||||||| |||||| |||| |||||    
T  12989222 agagtgttgaaaagtgagtgttgctagcattcctcat 12989186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 266
Target Start/End: Original strand, 6980177 - 6980302
Alignment:
Q  141 aaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgtt 240  Q
    ||||||||||| | |||||||||| ||||  ||| |||||||| |||| |||||||| |||||| |||| ||||||||| ||||| | ||||| | ||||    
T  6980177 aaatcattgtgggtctatactttgaaaattgaactcacacaaagtggtagaacataccttgatttcatccaataaaagagtgagtgctagagagagtgtt 6980276  T
Q  241 caaaagtgagtattgctaacatttct 266  Q
     |||||||| | |||||| |||||||    
T  6980277 gaaaagtgaatgttgctagcatttct 6980302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 37652294 - 37652378
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    ||||||||||||||||||||  ||| || ||||||||  |||  |||||||  ||||||||||||||||||| ||||||||||||    
T  37652294 attggtttaaatcattgtgaatctacacgttggaaattgaacatacacaaaggggtggaacatacattgatttcatctaataaaa 37652378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 10981649 - 10981582
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacatt 200  Q
    ||||||||||||||||||| | ||| || ||||||||| |||||||||||| |||||| |||||||||    
T  10981649 attggtttaaatcattgtgggtctacacattggaaatagaacccacacaaagtggtgggacatacatt 10981582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 268
Target Start/End: Complemental strand, 15509019 - 15508910
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgcta 258  Q
    |||||||||||  |||||||| |||||||||| ||||||||||||| ||   ||||||||| |||||   ||| | | |||||||||| |||| ||||||    
T  15509019 actttggaaatggaacccacaaaaaatggtgggacatacattgatttcactcaataaaagagtgagtgttagaaagagtgttcaaaagagagtgttgcta 15508920  T
Q  259 acatttctca 268  Q
    ||||| ||||    
T  15508919 acattcctca 15508910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 12989372 - 12989292
Alignment:
Q  50 agtgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgggactatacttc 130  Q
    ||||||| |||||||||||| |||| | | ||||||||  |||| ||||||||| |||||||||||||||| ||| |||||    
T  12989372 agtgctagcaacactctcttttgaacactctctctaatactcactctcttattggtttaaatcattgtgggtctacacttc 12989292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 42182994 - 42182890
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgcta 258  Q
    |||||||||||  |||||||| ||| |||||| ||||||||||||| || | ||||||||| ||||| | ||||| | || ||||||| |||| ||||||    
T  42182994 actttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtgctagagagagtgctcaaaagagagtgttgcta 42182895  T
Q  259 acatt 263  Q
     ||||    
T  42182894 gcatt 42182890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 263
Target Start/End: Complemental strand, 45554651 - 45554568
Alignment:
Q  180 caaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgctaacatt 263  Q
    |||| |||||| ||||||||||||| |||| ||||||||| ||||| | ||||| | |||| |||||||||| |||||| ||||    
T  45554651 caaagtggtgggacatacattgatttcatccaataaaagagtgagtgctagagagagtgttgaaaagtgagtgttgctagcatt 45554568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 269
Target Start/End: Original strand, 28898112 - 28898222
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgcta 258  Q
    |||||||||||  |||||||| ||| |||||| ||||||||||||| || | ||||||||| ||||| | ||||| | || ||||||  |||| ||||||    
T  28898112 actttggaaatgaaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtgctagagagagtgctcaaaaaagagtgttgcta 28898211  T
Q  259 acatttctcat 269  Q
     |||| |||||    
T  28898212 gcattcctcat 28898222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 129
Target Start/End: Complemental strand, 45554735 - 45554661
Alignment:
Q  55 taacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgggactatactt 129  Q
    ||||||||||||||| |||| ||| ||||||||  ||||  |||||||| |||||||||||||||| ||| ||||    
T  45554735 taacaacactctcttttgaacattctctctaatactcactttcttattggtttaaatcattgtgggtctacactt 45554661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 118
Target Start/End: Original strand, 34142141 - 34142206
Alignment:
Q  53 gctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtg 118  Q
    |||| ||||||||||||  ||||||||||| |||| ||||| ||||||||| |||||| |||||||    
T  34142141 gctagcaacactctctttagaatattttctttaatattcactctcttattggtttaaaccattgtg 34142206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 18511258 - 18511394
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||| ||||||  | ||  |||||| ||||  |||||||| ||||| |||| |||||||||||||  ||| ||||||||| |||||   || |    
T  18511258 attggtttaaaacattgtaggtcttcactttgaaaattgaacccacataaaatagtgggacatacattgattttatccaataaaagagtgagtgatagtg 18511357  T
Q  233 ataatgttcaaaagtgagtattgctaacatttctcat 269  Q
    | | |||| |||||||||| |||||| |||| |||||    
T  18511358 agagtgttaaaaagtgagtgttgctagcattcctcat 18511394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 263
Target Start/End: Complemental strand, 1110306 - 1110199
Alignment:
Q  156 tatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattg 255  Q
    ||||||||||||||  |||||||| ||| |||||| ||||||||||||| ||   ||||||||| |||||   ||||| |||| || |||| |||| |||    
T  1110306 tatactttggaaatggaacccacataaagtggtgggacatacattgatttcactcaataaaagagtgagtgttagagagaatgctcgaaagagagtgttg 1110207  T
Q  256 ctaacatt 263  Q
    ||| ||||    
T  1110206 ctagcatt 1110199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 266
Target Start/End: Original strand, 4602962 - 4603049
Alignment:
Q  179 acaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgctaacatttct 266  Q
    ||||| || ||||||||| ||||||| |||| ||||||||| ||||||| | ||  |  ||| |||||||||| ||||||||||||||    
T  4602962 acaaagtgatggaacatatattgatttcatccaataaaagagtgagtaccaaagggagcgttgaaaagtgagtgttgctaacatttct 4603049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 6980127 - 6980198
Alignment:
Q  58 caacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgggactatactt 129  Q
    |||||||||||| |||| | ||||||||||  |||| ||||||||  || ||||||||||||| ||||||||    
T  6980127 caacactctcttttgaacactttctctaatactcactctcttattagttgaaatcattgtgggtctatactt 6980198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 264
Target Start/End: Original strand, 16719479 - 16719610
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||| | | ||| | |||| ||||  |||| |||  ||||||||| | ||||||||||| |||||||||||||| |  || | | ||    
T  16719479 attggtttaaatcattgcgggtctacattttgaaaattgaacctacatgaaatggtgggatatacattgatttcatctaataaaagagtatgtgctaaag 16719578  T
Q  233 ataatgttcaaaagtgagtattgctaacattt 264  Q
    | | |||| |||||||||| |||||| |||||    
T  16719579 acagtgttgaaaagtgagtgttgctagcattt 16719610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 268
Target Start/End: Original strand, 24895313 - 24895449
Alignment:
Q  131 tcattggtttaaatcattgtgagac-tatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacga 229  Q
    ||||||| |||||||| |||| | | || |||||||||||  ||| |||| |||||||||||| |||||||||||  ||| | ||||||| ||||||  |    
T  24895313 tcattgggttaaatcaatgtgggtcatacactttggaaatggaactcacataaaatggtggaatatacattgattttatccattaaaagagtgagtatta 24895412  T
Q  230 gagataatgttcaaaagtgagtattgctaacatttctca 268  Q
    |||  | ||| |||||| |||| |||||| |||||||||    
T  24895413 gag--actgtccaaaagagagtgttgctagcatttctca 24895449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 43414485 - 43414402
Alignment:
Q  134 ttggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    ||||||||||||||||||   ||||||| || |||||  ||  || ||||||||| ||||||||||||||| |||| |||||||    
T  43414485 ttggtttaaatcattgtggatctatactctgaaaatagcacttacgcaaaatggtagaacatacattgatttcatccaataaaa 43414402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 44274365 - 44274294
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgatt 204  Q
    |||||||||||||||||||   ||| |||||| || |  |||||||||||| |||||| |||||||||||||    
T  44274365 attggtttaaatcattgtggatctacactttgaaagttgaacccacacaaagtggtgggacatacattgatt 44274294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 44274413 - 44274346
Alignment:
Q  52 tgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgg 119  Q
    |||||||||||||||||| | |||||| |||||||   |||| || |||||| |||||||||||||||    
T  44274413 tgctaacaacactctcttttaaatattctctctaacactcactctgttattggtttaaatcattgtgg 44274346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 9470232 - 9470183
Alignment:
Q  80 tctctaattttcacactcttattgatttaaatcattgtgggactatactt 129  Q
    |||||||| ||||| ||||||||| |||||||||||||||| ||| ||||    
T  9470232 tctctaatattcactctcttattggtttaaatcattgtgggtctacactt 9470183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 217
Target Start/End: Complemental strand, 30849373 - 30849284
Alignment:
Q  128 ttctcattggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    |||| |||| ||||||||||||||    ||| ||||  ||||| |||||| ||||| |||||| || |||||||||| ||||||||||||    
T  30849373 ttcttattgatttaaatcattgtggatttatcctttaaaaatagaacccatacaaattggtgggacgtacattgatttcatctaataaaa 30849284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 268
Target Start/End: Complemental strand, 11539530 - 11539419
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatac--attgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgc 256  Q
    |||||| ||||| ||| |||||||| || ||||||||||  ||||||| |||| ||||||||| ||||| | ||| | | ||||||||| ||||| |||     
T  11539530 actttgaaaatagaactcacacaaagtgatggaacatacatattgatttcatccaataaaagagtgagtgctagaaagagtgttcaaaaatgagtgttgt 11539431  T
Q  257 taacatttctca 268  Q
    || |||| ||||    
T  11539430 tagcattcctca 11539419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 38464294 - 38464210
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    ||||||||||||||||||| | ||| |||||| ||||  ||||||| |||| || ||  ||||||||||||| |||  |||||||    
T  38464294 attggtttaaatcattgtgggtctacactttgaaaattgaacccacgcaaagtgatgagacatacattgatttcatacaataaaa 38464210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 137 - 216
Target Start/End: Original strand, 1093126 - 1093205
Alignment:
Q  137 gtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaa 216  Q
    |||||||||||||||  |||| |||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||    
T  1093126 gtttaaatcattgtggaactacactttggaaatataactcatacaaagtggtggaacatacattgatttcatctaataaa 1093205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 931505 - 931375
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| |  |||| |||| ||||  |||||||| |||||| ||| |||||||||| ||||||  ||||||||| ||||||  ||||    
T  931505 attggtttaaatcattgtgggtgtatattttgaaaattgaacccacaaaaaatgatgggacatacattgcttccattcaataaaagagtgagtattagag 931406  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
    |||  ||| |||||||||| |||||| ||||    
T  931405 atagagttgaaaagtgagtgttgctagcatt 931375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 139 - 249
Target Start/End: Complemental strand, 24911588 - 24911480
Alignment:
Q  139 ttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatg 238  Q
    ||||||||||| |   |||||||||||||||| |||||||| ||| |||||| |||||||| |||| |||| ||||||||||||||| | ||||  | ||    
T  24911588 ttaaatcattgcgtatctatactttggaaataaaacccacaaaaagtggtgggacatacatggatttcatcgaataaaagaatgagtgctagag--agtg 24911491  T
Q  239 ttcaaaagtga 249  Q
    |||||||||||    
T  24911490 ttcaaaagtga 24911480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 133 - 216
Target Start/End: Complemental strand, 33193181 - 33193098
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaa 216  Q
    ||||||||||||||||||| | ||| |||||| ||||  ||||| ||||||||||||| ||||||||||||| |||| ||||||    
T  33193181 attggtttaaatcattgtgggtctacactttgaaaattgaaccctcacaaaatggtggcacatacattgatttcatccaataaa 33193098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 41958214 - 41958122
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    |||||||||||||| |||| | ||| |||||| ||||  ||||| ||||||||||||| ||||||||||||| |||| |||||| || |||||    
T  41958214 attggtttaaatcactgtgggtctacactttgaaaattgaacccccacaaaatggtgggacatacattgatttcatccaataaatgagtgagt 41958122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 119
Target Start/End: Original strand, 16948530 - 16948597
Alignment:
Q  52 tgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtgg 119  Q
    ||||| |||||||||||  |||| ||||||||||||  |||| |||||||||||||||||||||||||    
T  16948530 tgctagcaacactctctgttgaacattttctctaatactcactctcttattgatttaaatcattgtgg 16948597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 30678960 - 30679031
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgatt 204  Q
    ||||| ||||||||||||||| ||| |||||| ||||  |||||||||||| |||||| |||||||||||||    
T  30678960 attggcttaaatcattgtgagtctacactttgaaaattgaacccacacaaagtggtgggacatacattgatt 30679031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 263
Target Start/End: Original strand, 6133674 - 6133803
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||||||||| |||||||| |  || |||||| ||||  ||||||||||| ||||||| ||||| ||||||| |||| ||||||||  ||||| | ||||    
T  6133674 attggtttaa-tcattgtgggtgtagactttgaaaattgaacccacacaatatggtgggacatatattgatttcatccaataaaagggtgagtgctagag 6133772  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
    | | |||| |||||||||| |||||| ||||    
T  6133773 agattgttgaaaagtgagtgttgctagcatt 6133803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 25543470 - 25543341
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||||| ||  || |||| ||||| ||| ||||||| |||||| ||||| ||||||| |||| ||||||||| | |||   ||||    
T  25543470 attggtttaaatcattgtgaggctgcacattgggaatat-acctacacaaagtggtgggacatatattgatttcatcaaataaaagagtaagtgttagag 25543372  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
    | | |||| |||||||||| |||||| ||||    
T  25543371 agagtgtttaaaagtgagtgttgctagcatt 25543341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 26980311 - 26980429
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||| ||||||||||||||    |||| |||| ||||  ||| ||||||||||||||| ||||||||||||| |||| ||||| ||| ||||||  ||||    
T  26980311 attgatttaaatcattgtggatgtatattttgaaaattgaactcacacaaaatggtgggacatacattgatttcatccaataatagagtgagtattagag 26980410  T
Q  233 ataatgttcaaaagtgagt 251  Q
    | | |||| ||||||||||    
T  26980411 agagtgttgaaaagtgagt 26980429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 219
Target Start/End: Complemental strand, 2225360 - 2225269
Alignment:
Q  128 ttctcattggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    |||| |||||||||||||| |||  | ||| |||||| |||   |||||||||||| |||||| ||||||||||||| |||| |||||||||    
T  2225360 ttcttattggtttaaatcactgtcggtctacactttgtaaaccgaacccacacaaagtggtgggacatacattgatttcatccaataaaaga 2225269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 244
Target Start/End: Complemental strand, 15928686 - 15928575
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||||||||||||| ||| || ||| || ||| ||||| ||| ||||||||||||||  ||||||||  |||||||| ||||||||| || || | ||||    
T  15928686 attggtttaaatcactgtaagtctacaccttgaaaatagaactcacacaaaatggtgagacatacatgaattccatcaaataaaagagtgggtgctagag 15928587  T
Q  233 ataatgttcaaa 244  Q
    | | ||||||||    
T  15928586 agagtgttcaaa 15928575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 263
Target Start/End: Original strand, 3872683 - 3872812
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||||||| |||||||||| | ||| |||||||||||  |||| ||||||| |||||  ||||| |||||||  || ||||| |||| ||||| | ||||    
T  3872683 attggtttgaatcattgtgggtctacactttggaaattgaacctacacaaagtggtgtgacatatattgatt-tatttaatagaagagtgagtgctagag 3872781  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
    | | |||| |||||||||| |||||| ||||    
T  3872782 agagtgttgaaaagtgagtgttgctagcatt 3872812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 159 - 269
Target Start/End: Complemental strand, 11135844 - 11135734
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgcta 258  Q
    |||||||||||  |||||||| ||| |||||| ||||||||||||| || | ||||||| | ||||| | ||||| | || ||||||| |||| ||||||    
T  11135844 actttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaatagtgagtgctagagagagtgctcaaaagagagtgttgcta 11135745  T
Q  259 acatttctcat 269  Q
     |||| |||||    
T  11135744 gcattcctcat 11135734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 11987755 - 11987669
Alignment:
Q  135 tggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaat 221  Q
    ||||||||||||||||| | ||| |||||| ||||  ||||| ||| || |||||||||||||||| ||| |||| |||||| ||||    
T  11987755 tggtttaaatcattgtgggtctacactttgaaaattgaacccgcactaagtggtggaacatacattaatttcatccaataaatgaat 11987669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 22540499 - 22540369
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||| |   ||| |||||||||||| ||| | || ||| |||||| ||||||||||||| |||| ||||||| | ||||| | | ||    
T  22540499 attggtttaaatcattgcggatctacactttggaaatagaactcgcataaagtggtgggacatacattgatttcatccaataaaatagtgagtgctaaag 22540400  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
    | | ||| ||||||||| | |||||| ||||    
T  22540399 agagtgtgcaaaagtgaatgttgctagcatt 22540369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 39974201 - 39974266
Alignment:
Q  52 tgctaacaacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgt 117  Q
    |||||||||||||||||| |||| ||| | ||||||  |||| ||||||||| |||||||||||||    
T  39974201 tgctaacaacactctcttttgaacattctttctaatactcactctcttattggtttaaatcattgt 39974266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 217
Target Start/End: Original strand, 8741276 - 8741356
Alignment:
Q  137 gtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    ||||||||||||||| |  ||||||||| ||||  |||||||||||| | |||  ||||||||||||| |||| |||||||    
T  8741276 gtttaaatcattgtgtgtttatactttgaaaattgaacccacacaaattagtgagacatacattgatttcatccaataaaa 8741356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 32211833 - 32211925
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    ||||||||||||||||||| | ||| || ||  ||||  ||| |||||||| | || | ||||||||||||| |||||||||||||| |||||    
T  32211833 attggtttaaatcattgtgggtctacaccttaaaaattgaactcacacaaagtagttggacatacattgatttcatctaataaaagagtgagt 32211925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 39974282 - 39974326
Alignment:
Q  172 aacccacacaaaatggtggaacatacattgattccatctaataaa 216  Q
    |||||| ||||||||||||||||| |||||||| |||||||||||    
T  39974282 aacccatacaaaatggtggaacatccattgatttcatctaataaa 39974326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 44739223 - 44739119
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgcta 258  Q
    |||||||||||| ||| |||| ||| |||||| ||||||||| ||| ||   || |||||| ||||| | ||||| | |||||||||| |||| ||||||    
T  44739223 actttggaaatacaactcacataaagtggtgggacatacattaatttcactcaagaaaagagtgagtgctagagagagtgttcaaaagagagtgttgcta 44739124  T
Q  259 acatt 263  Q
    |||||    
T  44739123 acatt 44739119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 267
Target Start/End: Complemental strand, 50773161 - 50773105
Alignment:
Q  211 aataaaagaatgagtacgagagataatgttcaaaagtgagtattgctaacatttctc 267  Q
    ||||||||||||||| | ||||| | |||||||||| ||||||||||| ||||||||    
T  50773161 aataaaagaatgagtgctagagagagtgttcaaaagagagtattgctagcatttctc 50773105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 270
Target Start/End: Complemental strand, 11430546 - 11430435
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgcta 258  Q
    |||||||||||  |||||||| ||| |||||| ||||||||||||| || | ||||||||| ||||| | ||| | | || ||||||| |||| ||| ||    
T  11430546 actttggaaatggaacccacataaagtggtgggacatacattgatttcacccaataaaagagtgagtgctagaaagagtgctcaaaagagagtgttgtta 11430447  T
Q  259 acatttctcatc 270  Q
     |||| ||||||    
T  11430446 gcattcctcatc 11430435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 50773182 - 50773252
Alignment:
Q  155 ctatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    ||||| |||||||||  |||||||| ||| |||||||||||| |||||||  ||| ||||||||| |||||    
T  50773182 ctatattttggaaatggaacccacataaagtggtggaacatatattgattttatccaataaaagagtgagt 50773252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 225
Target Start/End: Complemental strand, 50539216 - 50539163
Alignment:
Q  172 aacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    |||||||| ||| ||||||||||||| |||||| |||| ||||||||| |||||    
T  50539216 aacccacataaagtggtggaacatactttgatttcatccaataaaagagtgagt 50539163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 8741230 - 8741290
Alignment:
Q  58 caacactctcttatgaatattttctctaattttcacactcttattgatttaaatcattgtg 118  Q
    |||||||||||| |||| | ||||||||||  |||| ||||||||  ||||||||||||||    
T  8741230 caacactctcttttgaacaatttctctaatactcactctcttattagtttaaatcattgtg 8741290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 15523341 - 15523257
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    ||||||||||||||||| |   ||| ||||| |||||| ||| | || ||| |||||| ||||||||||||| |||| |||||||    
T  15523341 attggtttaaatcattgcggatctacactttagaaatagaactcgcataaagtggtgggacatacattgatttcatccaataaaa 15523257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 15531335 - 15531251
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    ||||||||||||||||| |   ||| ||||| |||||| ||| | || ||| |||||| ||||||||||||| |||| |||||||    
T  15531335 attggtttaaatcattgcggatctacactttagaaatagaactcgcataaagtggtgggacatacattgatttcatccaataaaa 15531251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 263
Target Start/End: Original strand, 19101645 - 19101780
Alignment:
Q  128 ttctcattggtttaaatcattgtgaga-ctatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagta 226  Q
    |||| |||||||||||||||||  ||| ||| |||||| ||||| ||| | || ||| |||||| ||||||||||||| |||| ||||||| | |||||     
T  19101645 ttcttattggtttaaatcattgc-agatctacactttgaaaatagaactcgcataaagtggtgggacatacattgatttcatccaataaaatagtgagtg 19101743  T
Q  227 cgagagataatgttcaaaagtgagtattgctaacatt 263  Q
    | | ||| | ||| ||||||||| | |||||| ||||    
T  19101744 ctaaagagagtgtgcaaaagtgaatgttgctagcatt 19101780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 267
Target Start/End: Original strand, 41095684 - 41095792
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgcta 258  Q
    |||||| ||||  |||||||||| | || ||| ||||||||||||| || | |||||| || ||||| | ||||| | || ||||||| |||| ||||||    
T  41095684 actttgaaaatggaacccacacagagtgatgggacatacattgatttcacccaataaatgagtgagtgctagagagagtgctcaaaagagagtgttgcta 41095783  T
Q  259 acatttctc 267  Q
     ||||||||    
T  41095784 gcatttctc 41095792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 217
Target Start/End: Complemental strand, 44272049 - 44271965
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    |||| |||||||||||||    ||| |||||| ||||  |||| ||| |||||||||||||||||||||||| |||  |||||||    
T  44272049 attgatttaaatcattgttgttctacactttgaaaattgaacctacaaaaaatggtggaacatacattgatttcattcaataaaa 44271965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 49730995 - 49730903
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    ||||||||||||||||||| | ||| |||||| ||||  |||||||||||| | |||  ||||| |||  ||  ||||||||||||| |||||    
T  49730995 attggtttaaatcattgtgggtctacactttgaaaattgaacccacacaaagtagtgtgacatatattagtttaatctaataaaagagtgagt 49730903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 5413786 - 5413878
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    |||||||||||||||| || | ||| |||||| ||||  |||||||||||| |||||| ||||||||||||| |||| ||||||||| |||||    
T  5413786 attggtttaaatcattatgggtctacactttgtaaattgaacccacacaaagtggtgggacatacattgatttcatccaataaaagagtgagt 5413878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 128 - 219
Target Start/End: Original strand, 41330437 - 41330528
Alignment:
Q  128 ttctcattggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaaga 219  Q
    |||| ||||||||||||||||||||| ||| |||||| ||||  |||| ||||||| || ||| ||||||||| ||| ||||||||||||||    
T  41330437 ttcttattggtttaaatcattgtgagtctacactttgaaaattgaacctacacaaagtgatgggacatacattaatttcatctaataaaaga 41330528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 34384747 - 34384832
Alignment:
Q  140 taaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    |||||||||||||| ||||| |||| ||||  ||| |||||||||| |||| ||||||||||||| || | |||||||||||||||    
T  34384747 taaatcattgtgagtctataatttgaaaattgaactcacacaaaatagtgggacatacattgatttcacccaataaaagaatgagt 34384832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 159 - 268
Target Start/End: Original strand, 42224666 - 42224775
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgcta 258  Q
    |||||||||||  |||||||| ||| |||||| ||||||||||||| || ||||||||||| ||||| | ||||| | || ||||||| |||| ||||||    
T  42224666 actttggaaatggaacccacataaagtggtgggacatacattgatttcacctaataaaagagtgagtgctagagagagtgctcaaaagagagtgttgcta 42224765  T
Q  259 acatttctca 268  Q
     |||| ||||    
T  42224766 gcattcctca 42224775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 204
Target Start/End: Complemental strand, 10950213 - 10950146
Alignment:
Q  137 gtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgatt 204  Q
    |||||||||||| |||| |||||||||| ||||| || ||| |||||||||||| |||||||||||||    
T  10950213 gtttaaatcattatgagtctatactttgaaaatagaatccatacaaaatggtgggacatacattgatt 10950146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 133 - 263
Target Start/End: Complemental strand, 34368491 - 34368361
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    ||||||||||||||||||| | ||| |||||| |||   |||||||||||| ||||||||||||||||| ||  ||| ||| ||||| |||||   ||||    
T  34368491 attggtttaaatcattgtgggtctacactttgaaaaatgaacccacacaaagtggtggaacatacattggttttatccaatgaaagagtgagtgttagag 34368392  T
Q  233 ataatgttcaaaagtgagtattgctaacatt 263  Q
    | | ||||||||| | ||| |||||| ||||    
T  34368391 aaagtgttcaaaaataagtgttgctagcatt 34368361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 161 - 270
Target Start/End: Original strand, 13381857 - 13381965
Alignment:
Q  161 tttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgctaac 260  Q
    |||||||||| ||||||| |||| |  ||| | ||||||||||||| || ||||||| |||||||   ||||| | ||||||||||| ||| ||||||||    
T  13381857 tttggaaatagaacccactcaaagtcttgggaaatacattgattccgtccaataaaa-aatgagttgtagagagactgttcaaaagtaagtgttgctaac 13381955  T
Q  261 atttctcatc 270  Q
    ||||||||||    
T  13381956 atttctcatc 13381965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 269
Target Start/End: Original strand, 17537151 - 17537287
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||||||||||||||| ||   ||| |||||| ||||  |||| ||| ||| |||||| |||||||||||||  ||| ||||||||| |||||   ||||    
T  17537151 attggtttaaatcattatggatctacactttgaaaattaaaccaacaaaaattggtgggacatacattgatttgatcaaataaaagagtgagtgatagag 17537250  T
Q  233 ataatgttcaaaagtgagtattgctaacatttctcat 269  Q
    | | |||| |||||||||||||| || |||| |||||    
T  17537251 agagtgttgaaaagtgagtattgttatcattcctcat 17537287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 209
Target Start/End: Complemental strand, 25919342 - 25919266
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatc 209  Q
    ||||||||||||||||||||| ||| |||||| ||||  | ||||||||||||||||  ||||| ||||||| ||||    
T  25919342 attggtttaaatcattgtgagtctacactttgaaaattgatcccacacaaaatggtgagacatatattgatttcatc 25919266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 36337939 - 36338031
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    ||||||||||||||||||| | ||| |||||||||||  |||  |||||||||  ||| ||||||||| ||| |||| ||||||| |||||||    
T  36337939 attggtttaaatcattgtgggtctacactttggaaattgaacatacacaaaattatgggacatacattaatttcatcaaataaaataatgagt 36338031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 268
Target Start/End: Original strand, 28223825 - 28223960
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagag 232  Q
    |||||||||||||||| || | |||||||||| ||||  | |||||||||||| |  ||||||||| | ||| |||  ||||||||||| |||   | ||    
T  28223825 attggtttaaatcattatgggtctatactttgaaaattgagcccacacaaaattggtgaacatacaataatttcattcaataaaagaataagtgttaaag 28223924  T
Q  233 ataatgttcaaaagtgagtattgctaacatttctca 268  Q
     || |||| |||||||||| |||||| |||||||||    
T  28223925 gtagtgttgaaaagtgagtgttgctagcatttctca 28223960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 204
Target Start/End: Complemental strand, 37455479 - 37455409
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgatt 204  Q
    |||||||||| | |||||||| ||| |||||| ||||  ||||| |||||||||||||||||||||||||||    
T  37455479 attggtttaatt-attgtgagtctacactttgaaaattgaacccccacaaaatggtggaacatacattgatt 37455409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 225
Target Start/End: Complemental strand, 43405524 - 43405432
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    |||| |||||||||||||| | ||| |||||||||||| |||  | ||||| |||||  ||||||||||||| |||  ||||||||| |||||    
T  43405524 attgatttaaatcattgtgggtctacactttggaaatagaacatatacaaagtggtgagacatacattgatttcattcaataaaagagtgagt 43405432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 25564034 - 25564080
Alignment:
Q  172 aacccacacaaaatggtggaacatacattgattccatctaataaaag 218  Q
    |||||||||||| |||||||||||||||| ||| |||| ||||||||    
T  25564034 aacccacacaaagtggtggaacatacatttatttcatccaataaaag 25564080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 217
Target Start/End: Original strand, 1923601 - 1923685
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    |||||||||||||||||| | |||| |||||  ||||  ||| |||||||| |||||  |||||||||  || ||||||||||||    
T  1923601 attggtttaaatcattgtaaaactacactttaaaaattgaactcacacaaagtggtgtgacatacattctttgcatctaataaaa 1923685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 263
Target Start/End: Complemental strand, 4959383 - 4959279
Alignment:
Q  159 actttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgcta 258  Q
    |||||| |||| ||||||||| |||||| ||  ||||||||||||| || | ||||||||| || |||  ||||| | || ||||||| |||| ||||||    
T  4959383 actttgaaaatgtaacccacataaaatgatgagacatacattgatttcacccaataaaagagtgggtattagagagagtgctcaaaagagagtgttgcta 4959284  T
Q  259 acatt 263  Q
     ||||    
T  4959283 gcatt 4959279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 225
Target Start/End: Original strand, 10142025 - 10142117
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaagaatgagt 225  Q
    |||| ||||||| |||||  | ||| |||||| ||||  |||| ||||||| |||||| |||||||||||||  ||| ||||||||| |||||    
T  10142025 attgatttaaataattgttggtctacactttgaaaatggaaccaacacaaagtggtgggacatacattgattttatccaataaaagagtgagt 10142117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 32050413 - 32050489
Alignment:
Q  187 gtggaacatacattgattccatctaataaaagaatgagtacgagagataatgttcaaaagtgagtattgctaacatt 263  Q
    |||||||||||||||||| || | ||||||| | ||||| | ||||| |||| ||||||| |||| |||||| ||||    
T  32050413 gtggaacatacattgatttcacccaataaaaaagtgagtgctagagagaatgctcaaaagagagtgttgctagcatt 32050489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 43405535 - 43405495
Alignment:
Q  89 ttcacactcttattgatttaaatcattgtgggactatactt 129  Q
    ||||| |||||||||||||||||||||||||| ||| ||||    
T  43405535 ttcactctcttattgatttaaatcattgtgggtctacactt 43405495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 9791 - 9711
Alignment:
Q  137 gtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    |||||||| |||||||| ||| |||||  ||||  ||||||||||||||||||| | ||||||||||| |||| |||||||    
T  9791 gtttaaattattgtgagtctacacttttaaaattgaacccacacaaaatggtgggatatacattgatttcatccaataaaa 9711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0492 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 11337 - 11257
Alignment:
Q  137 gtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgattccatctaataaaa 217  Q
    |||||||| |||||||| ||| |||||  ||||  ||||||||||||||||||| | ||||||||||| |||| |||||||    
T  11337 gtttaaattattgtgagtctacacttttaaaattgaacccacacaaaatggtgggatatacattgatttcatccaataaaa 11257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 204
Target Start/End: Original strand, 26911 - 26982
Alignment:
Q  133 attggtttaaatcattgtgagactatactttggaaatataacccacacaaaatggtggaacatacattgatt 204  Q
    ||||||||||| |||| || | |||  ||||| ||||  |||||||||||| ||||||||||||||||||||    
T  26911 attggtttaaagcattatgggtctacgctttgaaaattgaacccacacaaagtggtggaacatacattgatt 26982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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