View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_40 (Length: 370)
Name: NF14353_low_40
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 5e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 13 - 224
Target Start/End: Original strand, 39789259 - 39789470
Alignment:
| Q |
13 |
aatattagtggtcacctatatataataagagatgaccctagttttatt-ataaaaatcaaattgttctgagttgttctctactgctacaaaattcttttc |
111 |
Q |
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| T |
39789259 |
aatatcagtggtcacctatatataataagagatgaccctagttttatttataaaaatcaaattgttctgagttgttctctactgctacaaaattcttttc |
39789358 |
T |
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| Q |
112 |
tgtcatctgataactctccacaatctaaaaaggtattggcnnnnnnnnnnnnaattaaatggtattgcttctttcttctcctttgtgttgtagttatgtc |
211 |
Q |
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| T |
39789359 |
tgtcatctg-taactctccacaatctaaaaaggtattggctttttcttttttaattaaatggtattgcttctttcttctcctttgtgttgtagttatgcc |
39789457 |
T |
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| Q |
212 |
aaattccaattac |
224 |
Q |
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||||||||||||| |
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| T |
39789458 |
aaattccaattac |
39789470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 289 - 353
Target Start/End: Original strand, 39789535 - 39789599
Alignment:
| Q |
289 |
atacttgtattccaaaagcaaagaatcaagggacaaccttataaaagttattctcaaactcaatc |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39789535 |
atacttgtattccaaaagcaaagaatcaagggacaaccttataaaagttattctcatactcaatc |
39789599 |
T |
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