View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14353_low_41 (Length: 367)

Name: NF14353_low_41
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14353_low_41
NF14353_low_41
[»] chr5 (10 HSPs)
chr5 (259-355)||(3577764-3577860)
chr5 (17-68)||(3578389-3578440)
chr5 (271-342)||(13639617-13639688)
chr5 (268-339)||(39741522-39741593)
chr5 (271-340)||(14626208-14626277)
chr5 (281-333)||(42552556-42552608)
chr5 (295-341)||(3577572-3577618)
chr5 (272-342)||(5548096-5548166)
chr5 (280-346)||(13360999-13361065)
chr5 (274-339)||(11488860-11488925)
[»] chr3 (12 HSPs)
chr3 (260-355)||(39450615-39450710)
chr3 (260-355)||(25189636-25189731)
chr3 (263-342)||(38018459-38018538)
chr3 (268-355)||(38216321-38216408)
chr3 (286-339)||(11256774-11256827)
chr3 (260-340)||(32109775-32109855)
chr3 (271-355)||(49726409-49726493)
chr3 (268-346)||(39450872-39450950)
chr3 (285-355)||(39492524-39492594)
chr3 (286-342)||(14742204-14742260)
chr3 (272-355)||(38018255-38018338)
chr3 (263-328)||(14741938-14742003)
[»] scaffold0157 (2 HSPs)
scaffold0157 (262-355)||(21372-21465)
scaffold0157 (305-342)||(21174-21211)
[»] chr4 (12 HSPs)
chr4 (262-355)||(12499012-12499105)
chr4 (260-355)||(18879327-18879422)
chr4 (260-355)||(44362907-44363002)
chr4 (260-342)||(44363375-44363457)
chr4 (263-355)||(6216196-6216287)
chr4 (268-341)||(43365802-43365875)
chr4 (263-347)||(38435084-38435168)
chr4 (268-355)||(1351270-1351357)
chr4 (268-355)||(36061022-36061107)
chr4 (284-346)||(51871595-51871657)
chr4 (305-342)||(12499266-12499303)
chr4 (305-341)||(36061270-36061306)
[»] chr7 (9 HSPs)
chr7 (268-355)||(37327300-37327387)
chr7 (263-347)||(23416131-23416214)
chr7 (260-342)||(29366603-29366685)
chr7 (260-342)||(44858068-44858149)
chr7 (263-338)||(42055285-42055358)
chr7 (261-328)||(29366347-29366414)
chr7 (263-342)||(37327549-37327628)
chr7 (281-355)||(35651979-35652053)
chr7 (262-355)||(27567845-27567937)
[»] chr8 (9 HSPs)
chr8 (262-358)||(3207845-3207941)
chr8 (260-341)||(20771678-20771759)
chr8 (260-341)||(20781472-20781553)
chr8 (261-342)||(24587084-24587165)
chr8 (267-346)||(32089276-32089355)
chr8 (272-342)||(13267801-13267870)
chr8 (285-347)||(30537667-30537729)
chr8 (271-339)||(39186159-39186228)
chr8 (286-338)||(3207640-3207692)
[»] chr6 (6 HSPs)
chr6 (268-355)||(6198076-6198163)
chr6 (260-355)||(28587611-28587706)
chr6 (264-342)||(28587867-28587945)
chr6 (263-341)||(10244542-10244620)
chr6 (286-342)||(4838055-4838111)
chr6 (309-353)||(24800114-24800158)
[»] chr2 (6 HSPs)
chr2 (260-343)||(1602881-1602964)
chr2 (262-355)||(40609896-40609989)
chr2 (268-347)||(1602644-1602722)
chr2 (285-342)||(35695325-35695382)
chr2 (274-339)||(964093-964158)
chr2 (274-338)||(37400688-37400752)
[»] chr1 (9 HSPs)
chr1 (268-355)||(42508258-42508345)
chr1 (268-342)||(26767623-26767696)
chr1 (280-346)||(15061696-15061761)
chr1 (260-354)||(43670692-43670786)
chr1 (286-342)||(15061471-15061527)
chr1 (260-355)||(43344794-43344889)
chr1 (261-355)||(38275753-38275847)
chr1 (286-355)||(6638392-6638461)
chr1 (305-346)||(12857519-12857560)
[»] scaffold0122 (1 HSPs)
scaffold0122 (286-342)||(17780-17836)
[»] scaffold0062 (2 HSPs)
scaffold0062 (262-342)||(20220-20300)
scaffold0062 (262-342)||(30388-30468)


Alignment Details
Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 259 - 355
Target Start/End: Complemental strand, 3577860 - 3577764
Alignment:
Q  259 caggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| ||||||||    
T  3577860 caggcttatttgcagttttagtccctctattttcaccattttgaagaattggtccccctattttaaaatttgacagttttggcctctcgctcatatt 3577764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 3578440 - 3578389
Alignment:
Q  17 ttttaattatttgtgtcatttctatcactttacttcaaaaacacaacagacg 68  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3578440 ttttaattatttgtgtcatttctatcactttacttcaaaaacacaacagacg 3578389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 342
Target Start/End: Complemental strand, 13639688 - 13639617
Alignment:
Q  271 cagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    ||||||| |||||| |||||||| ||||||| | |||||||| |||||||||||||||  | ||||||||||    
T  13639688 cagttttggtccctttattttcatcattttgcaaaattggtccccctattttaaaattctaaaattttggtc 13639617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 339
Target Start/End: Complemental strand, 39741593 - 39741522
Alignment:
Q  268 ttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttg 339  Q
    |||||||||||||||||||||||||| |||||||   | ||| ||||| |||||||||||| || |||||||    
T  39741593 ttgcagttttagtccctctattttcatcattttgtgaatttgatctccttattttaaaattcgataattttg 39741522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 340
Target Start/End: Original strand, 14626208 - 14626277
Alignment:
Q  271 cagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttgg 340  Q
    ||||||| |||||| |||||||||  ||||  ||||||||||  ||||||||||||||||||| ||||||    
T  14626208 cagttttggtccctttattttcacttttttacagaattggtcctcctattttaaaatttgacagttttgg 14626277  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 333
Target Start/End: Original strand, 42552556 - 42552608
Alignment:
Q  281 ccctctattttcaccattttgaagaattggtctccctattttaaaatttgaca 333  Q
    ||||||||||||||||||||| |||||||||| |  |||||||||||| ||||    
T  42552556 ccctctattttcaccattttgtagaattggtccctgtattttaaaattcgaca 42552608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 3577572 - 3577618
Alignment:
Q  295 cattttgaagaattggtctccctattttaaaatttgacaattttggt 341  Q
    ||||||| | ||||||||| |||||||||||||| ||||||||||||    
T  3577572 cattttgcaaaattggtcttcctattttaaaattcgacaattttggt 3577618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 5548096 - 5548166
Alignment:
Q  272 agttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    ||||||||||||| |||||| |  ||||||   |||||||| | ||||||||||||| |||||||||||||    
T  5548096 agttttagtccctttatttttattattttgttaaattggtccctctattttaaaattcgacaattttggtc 5548166  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 346
Target Start/End: Original strand, 13360999 - 13361065
Alignment:
Q  280 tccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctc 346  Q
    ||||||||||||||  ||||||   ||||| ||||| |||||||||||| |||||||||| ||||||    
T  13360999 tccctctattttcattattttgcgaaattgatctccttattttaaaattcgacaattttgatctctc 13361065  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 339
Target Start/End: Original strand, 11488860 - 11488925
Alignment:
Q  274 ttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttg 339  Q
    |||| |||| |||||||| | | |||||| ||||||||| ||||||||||||| | ||||||||||    
T  11488860 ttttggtccttctatttttatctttttgaggaattggtccccctattttaaaactcgacaattttg 11488925  T

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Target: chr3 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 260 - 355
Target Start/End: Original strand, 39450615 - 39450710
Alignment:
Q  260 aggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    ||||||| |||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| || |||| |||||||    
T  39450615 aggcttaattgcagtttttgtccccctattttcaccattttgcagaattggtccccctattttaaaatttgacagttttgatccctccatcatatt 39450710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 260 - 355
Target Start/End: Complemental strand, 25189731 - 25189636
Alignment:
Q  260 aggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    ||||||| |||||||||| ||||| ||||||| ||||||||| |||||||||| |||||||||||||||  ||| |||||||| |||| |||||||    
T  25189731 aggcttaattgcagttttggtccccctatttttaccattttgcagaattggtccccctattttaaaattcaacagttttggtccctccatcatatt 25189636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 263 - 342
Target Start/End: Complemental strand, 38018538 - 38018459
Alignment:
Q  263 cttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    |||| |||||||||| ||||| ||||||||  ||||||  |||||||||||| |||||||||||||||||||||||||||    
T  38018538 cttaattgcagttttggtccccctattttcttcattttatagaattggtctctctattttaaaatttgacaattttggtc 38018459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 38216408 - 38216321
Alignment:
Q  268 ttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    |||||||||| ||||| ||||||||||||||||| | |||||||| ||||||||||||||| |||| ||||||||  ||| |||||||    
T  38216408 ttgcagttttggtccccctattttcaccattttgcataattggtccccctattttaaaattcgacacttttggtcattccatcatatt 38216321  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 11256774 - 11256827
Alignment:
Q  286 tattttcaccattttgaagaattggtctccctattttaaaatttgacaattttg 339  Q
    |||||||||||||||| ||||||| ||  |||||||||||||||||||||||||    
T  11256774 tattttcaccattttggagaattgatcctcctattttaaaatttgacaattttg 11256827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 260 - 340
Target Start/End: Complemental strand, 32109855 - 32109775
Alignment:
Q  260 aggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttgg 340  Q
    ||||||| |||||||||| ||||||||||||| | | |||||  ||||||||| |||||||| |||||| |||| ||||||    
T  32109855 aggcttaattgcagttttggtccctctattttgatctttttgttgaattggtccccctatttcaaaattcgacagttttgg 32109775  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 271 - 355
Target Start/End: Original strand, 49726409 - 49726493
Alignment:
Q  271 cagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    |||||||  ||||| |||||||| ||||||  ||||||| | | ||||||||||||||||||| |||||||| |||| |||||||    
T  49726409 cagttttgatccctttattttcatcattttatagaattgattttcctattttaaaatttgacagttttggtccctccatcatatt 49726493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 346
Target Start/End: Complemental strand, 39450950 - 39450872
Alignment:
Q  268 ttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctc 346  Q
    |||||||||| ||||  ||||||| | |||| || | ||||||||  ||||||||||||||| ||||||||||||||||    
T  39450950 ttgcagttttggtcctcctatttttatcattatgcaaaattggtccacctattttaaaatttaacaattttggtctctc 39450872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 285 - 355
Target Start/End: Complemental strand, 39492594 - 39492524
Alignment:
Q  285 ctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    ||||||||||||||||| |||||||||| || |||||||| ||| | || |||||||| |||| |||||||    
T  39492594 ctattttcaccattttgcagaattggtccccgtattttaacattcgtcagttttggtccctccatcatatt 39492524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 14742260 - 14742204
Alignment:
Q  286 tattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    |||||||| |||||||   |||||||| ||||||||||||||| |||||||||||||    
T  14742260 tattttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtc 14742204  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 355
Target Start/End: Original strand, 38018255 - 38018338
Alignment:
Q  272 agttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    |||||| ||||  ||||||||||||||||  ||||||| || |  |||||||||||| |||||| |||||| |||| |||||||    
T  38018255 agttttggtcctcctattttcaccattttacagaattgatcccattattttaaaattcgacaatcttggtccctccatcatatt 38018338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 14741938 - 14742003
Alignment:
Q  263 cttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatt 328  Q
    |||| |||||||||| ||||| |||||||||||| |||| | |||||||| | ||| |||||||||    
T  14741938 cttaattgcagttttggtccccctattttcaccactttgcaaaattggtccctctaatttaaaatt 14742003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 262 - 355
Target Start/End: Complemental strand, 21465 - 21372
Alignment:
Q  262 gcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    ||||||||||||||||  |||| ||||||||||||||||| |||||||||| ||||||||||||||| |||| |||||||| |||| |||||||    
T  21465 gcttatttgcagttttgatccccctattttcaccattttgcagaattggtccccctattttaaaattcgacagttttggtccctccatcatatt 21372  T

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Target: scaffold0157; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 21174 - 21211
Alignment:
Q  305 aattggtctccctattttaaaatttgacaattttggtc 342  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  21174 aattggtccccctattttaaaattcgacaattttggtc 21211  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 262 - 355
Target Start/End: Original strand, 12499012 - 12499105
Alignment:
Q  262 gcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    ||||||||||||||||  |||| ||||||||||||||||| |||||||||| ||||||||||||||| |||| |||||||| |||| |||||||    
T  12499012 gcttatttgcagttttgatccccctattttcaccattttgcagaattggtccccctattttaaaattcgacagttttggtccctccatcatatt 12499105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 260 - 355
Target Start/End: Complemental strand, 18879422 - 18879327
Alignment:
Q  260 aggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    ||||||| ||||| |||| ||||| ||||||||||||||||| | ||||| || ||||| ||||||||||||||||||||||| |||| |||||||    
T  18879422 aggcttaattgcaattttggtccccctattttcaccattttgcataattgatccccctaatttaaaatttgacaattttggtccctccatcatatt 18879327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 260 - 355
Target Start/End: Original strand, 44362907 - 44363002
Alignment:
Q  260 aggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    ||||||| |||||||||| ||||| ||||||||||||||||| |||||||||| |||| |||||||| | |||| |||||||| |||| |||||||    
T  44362907 aggcttaattgcagttttggtccccctattttcaccattttgtagaattggtccccctgttttaaaactcgacagttttggtccctccatcatatt 44363002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 44363457 - 44363375
Alignment:
Q  260 aggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    ||||||| |||||||||| |||||  |||||||| |||||||   |||||||| ||||||||||||||| |||||||||||||    
T  44363457 aggcttaattgcagttttggtccccttattttcatcattttgcgaaattggtccccctattttaaaattcgacaattttggtc 44363375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 355
Target Start/End: Original strand, 6216196 - 6216287
Alignment:
Q  263 cttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    |||| ||||| |||| ||||| |||||||||||| |||| |||||||||| ||||||||||||||| || | |||||||| |||| |||||||    
T  6216196 cttaattgcaattttggtccc-ctattttcaccactttgcagaattggtccccctattttaaaattcgatagttttggtccctccatcatatt 6216287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 341
Target Start/End: Original strand, 43365802 - 43365875
Alignment:
Q  268 ttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggt 341  Q
    ||||||||||  |||||||||||| ||||||||| | ||||||||  | |||||||||||| |||| |||||||    
T  43365802 ttgcagtttttatccctctatttttaccattttgcaaaattggtcctcatattttaaaattcgacagttttggt 43365875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 347
Target Start/End: Original strand, 38435084 - 38435168
Alignment:
Q  263 cttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctcc 347  Q
    |||| ||||||||||  |||  |||||| || |||||||  |||| ||||| ||||||||||||||||||| |||||||| ||||    
T  38435084 cttaattgcagttttgatcctcctatttccatcattttgtggaatcggtcttcctattttaaaatttgacagttttggtccctcc 38435168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 1351270 - 1351357
Alignment:
Q  268 ttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    ||||| |||| ||||  |||||||||| | |||| |||||||||  || |||||||||||| ||||||||||||| |||  |||||||    
T  1351270 ttgcaattttggtcctcctattttcacaactttgcagaattggttcccttattttaaaattcgacaattttggtccctctatcatatt 1351357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 36061022 - 36061107
Alignment:
Q  268 ttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    |||||||||| || |  ||||||||||||||||| ||||  |||| ||||||||||||||| |||| |||||||| |||| |||||||    
T  36061022 ttgcagttttggttctcctattttcaccattttgtagaaa-ggtc-ccctattttaaaattcgacagttttggtccctccatcatatt 36061107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 346
Target Start/End: Original strand, 51871595 - 51871657
Alignment:
Q  284 tctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctc 346  Q
    |||||||||||||||||    ||||||||||| |||||||||||||||||  ||| |||||||    
T  51871595 tctattttcaccattttatgaaattggtctccgtattttaaaatttgacagctttagtctctc 51871657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 342
Target Start/End: Complemental strand, 12499303 - 12499266
Alignment:
Q  305 aattggtctccctattttaaaatttgacaattttggtc 342  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  12499303 aattggtccccctattttaaaattcgacaattttggtc 12499266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 341
Target Start/End: Complemental strand, 36061306 - 36061270
Alignment:
Q  305 aattggtctccctattttaaaatttgacaattttggt 341  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  36061306 aattggtccccctattttaaaattggacaattttggt 36061270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 37327300 - 37327387
Alignment:
Q  268 ttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    ||||||||||  |||| ||||||||||||||||| |||| ||||| ||||||||||||||| |||||||||||||||||  |||||||    
T  37327300 ttgcagttttgatccccctattttcaccattttgcagaaatggtccccctattttaaaattcgacaattttggtctctctatcatatt 37327387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 263 - 347
Target Start/End: Complemental strand, 23416214 - 23416131
Alignment:
Q  263 cttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctcc 347  Q
    |||| |||||||| | |||| |||||||||||||||||| ||  |||||| |||||||||||||||||||| |||||||| ||||    
T  23416214 cttaattgcagttctggtccttctattttcaccattttgcagttttggtc-ccctattttaaaatttgacagttttggtccctcc 23416131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 29366685 - 29366603
Alignment:
Q  260 aggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    ||||||| |||||||||| ||||||||||||||| || |||| | ||||| |  | ||||||||| |||||||||||||||||    
T  29366685 aggcttaattgcagttttggtccctctattttcatcaatttgcaaaattgattcctctattttaatatttgacaattttggtc 29366603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 44858149 - 44858068
Alignment:
Q  260 aggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    ||||||| ||||||||||  |||| ||||||| ||||||||| | ||| |||| |||||||||||||||||||| ||||||||    
T  44858149 aggcttaattgcagttttgatccccctatttttaccattttgcaaaat-ggtccccctattttaaaatttgacagttttggtc 44858068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 338
Target Start/End: Original strand, 42055285 - 42055358
Alignment:
Q  263 cttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaatttt 338  Q
    |||| |||||||||| ||||| ||||||| ||||||||| |||||||||| || ||||||||||||||||| ||||    
T  42055285 cttaattgcagttttggtccc-ctatttttaccattttgtagaattggtc-ccttattttaaaatttgacagtttt 42055358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 261 - 328
Target Start/End: Original strand, 29366347 - 29366414
Alignment:
Q  261 ggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatt 328  Q
    |||||| ||| |||||| ||||| |||||||||| |||||| | |||||||| || ||||||||||||    
T  29366347 ggcttaattgtagttttggtccccctattttcacaattttgcaaaattggtccccatattttaaaatt 29366414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 342
Target Start/End: Complemental strand, 37327628 - 37327549
Alignment:
Q  263 cttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    |||| |||||||||| ||||  |  |||||| |||||||   |||||||| ||||||||||||||| |||||||||||||    
T  37327628 cttaattgcagttttggtcctccacttttcatcattttgcgaaattggtccccctattttaaaattggacaattttggtc 37327549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 355
Target Start/End: Original strand, 35651979 - 35652053
Alignment:
Q  281 ccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    |||||| ||||| |||||||  |||||||||| |||||||||||||||| | | |||||||  |||| |||||||    
T  35651979 ccctctgttttcgccattttacagaattggtccccctattttaaaatttcatagttttggttcctccatcatatt 35652053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 355
Target Start/End: Complemental strand, 27567937 - 27567845
Alignment:
Q  262 gcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    ||||| ||||||||||  |||| ||||||||| | ||| |  ||||||||| ||||||||||||||| |||| |||||||| |||  |||||||    
T  27567937 gcttaattgcagttttgatccc-ctattttcatcttttcgtggaattggtccccctattttaaaattcgacagttttggtccctctatcatatt 27567845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 262 - 358
Target Start/End: Complemental strand, 3207941 - 3207845
Alignment:
Q  262 gcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatattctt 358  Q
    ||||| ||||| |||| ||||| |||||||||| |||||| |||||||||| ||||||||||||||| || | |||||||| |||| ||||||||||    
T  3207941 gcttaattgcactttttgtccccctattttcactattttgcagaattggtccccctattttaaaattcgatagttttggtcactccatcatattctt 3207845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 20771759 - 20771678
Alignment:
Q  260 aggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggt 341  Q
    ||||||| ||| |||||| ||||| ||||||||| ||||||| | |||||||| | |||||||||||||| ||| |||||||    
T  20771759 aggcttaattgtagttttggtccccctattttcatcattttgcaaaattggtccctctattttaaaatttaacatttttggt 20771678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 341
Target Start/End: Complemental strand, 20781553 - 20781472
Alignment:
Q  260 aggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggt 341  Q
    ||||||| ||| |||||| ||||| ||||||||| ||||||| | |||||||| | |||||||||||||| ||| |||||||    
T  20781553 aggcttaattgtagttttggtccccctattttcatcattttgcaaaattggtccctctattttaaaatttaacatttttggt 20781472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 24587084 - 24587165
Alignment:
Q  261 ggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    |||||| ||| |||||| || || ||||||| || |||||| ||  ||||||||| |||||||||||| |||||||||||||    
T  24587084 ggcttaattgtagttttggttcccctatttttactattttgtagttttggtctccatattttaaaattcgacaattttggtc 24587165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 32089355 - 32089276
Alignment:
Q  267 tttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctc 346  Q
    ||||||||||| ||||| ||||||||| | |||||   |||||||| ||||||||| || || |||| ||||||||||||    
T  32089355 tttgcagttttggtccccctattttcatctttttgtgaaattggtccccctattttgaagttcgacagttttggtctctc 32089276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 342
Target Start/End: Original strand, 13267801 - 13267870
Alignment:
Q  272 agttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    |||||| ||||| ||||||| || |||||| | |||||||| ||||||||||||||| |||| ||||||||    
T  13267801 agttttggtccccctatttttactattttgtaaaattggtc-ccctattttaaaattcgacagttttggtc 13267870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 347
Target Start/End: Original strand, 30537667 - 30537729
Alignment:
Q  285 ctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctcc 347  Q
    |||||||| |||||||  | |||||||| | |||||| ||||| |||||||||||||||||||    
T  30537667 ctattttctccattttacataattggtccctctatttaaaaatatgacaattttggtctctcc 30537729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 339
Target Start/End: Original strand, 39186159 - 39186228
Alignment:
Q  271 cagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaa-tttgacaattttg 339  Q
    ||||||| ||||  ||||||||| ||||||| | |||||||| ||||||||||||| || ||||||||||    
T  39186159 cagttttggtcctcctattttcatcattttgcaaaattggtccccctattttaaaacttcgacaattttg 39186228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 338
Target Start/End: Original strand, 3207640 - 3207692
Alignment:
Q  286 tattttcaccattttgaagaattggtctccctattttaaaatttgacaatttt 338  Q
    |||||||| ||||||  | |||||||||| ||||||||||||| |||||||||    
T  3207640 tattttcatcattttacaaaattggtctctctattttaaaattcgacaatttt 3207692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 268 - 355
Target Start/End: Complemental strand, 6198163 - 6198076
Alignment:
Q  268 ttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    |||||||||| |||| |||||||||||||||||| |||||||||| ||||||||||||||| | || ||||| || |||| |||||||    
T  6198163 ttgcagttttggtccatctattttcaccattttgtagaattggtccccctattttaaaattcgtcagttttgctccctccatcatatt 6198076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 260 - 355
Target Start/End: Original strand, 28587611 - 28587706
Alignment:
Q  260 aggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    ||||||| |||||||||| ||||| || |||||||||||||| | | |||||| ||||||||||||||| |||| |||| ||| |||| |||||||    
T  28587611 aggcttaattgcagttttggtccccctgttttcaccattttgcaaatttggtccccctattttaaaattcgacagttttcgtccctccatcatatt 28587706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 264 - 342
Target Start/End: Complemental strand, 28587945 - 28587867
Alignment:
Q  264 ttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    |||||||||||||| ||||| ||||||||||||||||| | | |||| | ||||||||||||||| |||| ||||||||    
T  28587945 ttatttgcagttttggtccccctattttcaccattttgtaaatttggcccccctattttaaaattcgacagttttggtc 28587867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 10244620 - 10244542
Alignment:
Q  263 cttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggt 341  Q
    |||| |||||||||| |||   || ||||||| |||||| | |||||||| |||||||||||||||||||| |||||||    
T  10244620 cttaattgcagttttggtcttcctgttttcactattttgcaaaattggtccccctattttaaaatttgacagttttggt 10244542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 4838111 - 4838055
Alignment:
Q  286 tattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    |||||||| |||||||   |||||||| ||||||||||||| |||||||||||||||    
T  4838111 tattttcatcattttgcgaaattggtccccctattttaaaagttgacaattttggtc 4838055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 309 - 353
Target Start/End: Complemental strand, 24800158 - 24800114
Alignment:
Q  309 ggtctccctattttaaaatttgacaattttggtctctccctcata 353  Q
    |||| |||||||||||||||||||||  ||||||||||| |||||    
T  24800158 ggtcaccctattttaaaatttgacaacgttggtctctccatcata 24800114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 260 - 343
Target Start/End: Complemental strand, 1602964 - 1602881
Alignment:
Q  260 aggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtct 343  Q
    ||||||| || || |||| ||||| |||||||||||||||||| || |||||| |||||||||||||| |||||||||||||||    
T  1602964 aggcttaattacaattttggtcccactattttcaccattttgaggatttggtccccctattttaaaatctgacaattttggtct 1602881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 262 - 355
Target Start/End: Complemental strand, 40609989 - 40609896
Alignment:
Q  262 gcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    ||||| |||||||||| ||||  |||||||||| |||||  |||||||||| |||||||||||||||||| | ||||| || |||| |||||||    
T  40609989 gcttaattgcagttttggtcctcctattttcacaattttacagaattggtccccctattttaaaatttgagagttttgatccctccatcatatt 40609896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 347
Target Start/End: Original strand, 1602644 - 1602722
Alignment:
Q  268 ttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctcc 347  Q
    |||||||||||||| | |||||||||||||||||  |||||| || || | ||||||||||||||| |||||||| ||||    
T  1602644 ttgcagttttagtctccctattttcaccattttgcggaattgatc-ccttgttttaaaatttgacagttttggtccctcc 1602722  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 342
Target Start/End: Original strand, 35695325 - 35695382
Alignment:
Q  285 ctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    ||||||||||||||||| | |||||||| || |||||||||||| ||||| |||||||    
T  35695325 ctattttcaccattttgtaaaattggtccccttattttaaaattcgacaactttggtc 35695382  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 339
Target Start/End: Complemental strand, 964158 - 964093
Alignment:
Q  274 ttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttg 339  Q
    |||| |||| |||||||| | | |||||| ||||||||| ||||||||||||||| |||| |||||    
T  964158 ttttggtccttctatttttatctttttgaggaattggtccccctattttaaaattcgacagttttg 964093  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 338
Target Start/End: Complemental strand, 37400752 - 37400688
Alignment:
Q  274 ttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaatttt 338  Q
    ||||||||| |||||||| | | |||||| |||||| || ||||||||||||||| |||| ||||    
T  37400752 ttttagtccttctatttttatctttttgaggaattgatccccctattttaaaattcgacagtttt 37400688  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 42508258 - 42508345
Alignment:
Q  268 ttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    |||||||||| ||||  ||||||||||||||||  |||| ||||| ||||||||||||||| |||| ||||||||  ||| |||||||    
T  42508258 ttgcagttttggtcctcctattttcaccattttacagaaatggtccccctattttaaaattcgacagttttggtccttccgtcatatt 42508345  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 268 - 342
Target Start/End: Original strand, 26767623 - 26767696
Alignment:
Q  268 ttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    |||||||||| ||| | ||||||||||||||||| | ||||| || |||||||||||||||||||| ||||||||    
T  26767623 ttgcagttttggtctccctattttcaccattttgtaaaattgttc-ccctattttaaaatttgacagttttggtc 26767696  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 346
Target Start/End: Complemental strand, 15061761 - 15061696
Alignment:
Q  280 tccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctc 346  Q
    |||| ||||||| | ||||||| | ||||||||||||||||||| || |||||||||||||||||||    
T  15061761 tccccctatttttatcattttgcaaaattggtctccctattttagaa-ttgacaattttggtctctc 15061696  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 354
Target Start/End: Original strand, 43670692 - 43670786
Alignment:
Q  260 aggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatat 354  Q
    ||||||| |||||||||| ||||| ||||||||||  ||||| | ||||||||  |||||||||||||| |||  | |||||| |||| ||||||    
T  43670692 aggcttaattgcagttttggtccccctattttcactcttttgcaaaattggtcctcctattttaaaattcgactgtcttggtccctccatcatat 43670786  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 342
Target Start/End: Original strand, 15061471 - 15061527
Alignment:
Q  286 tattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    |||||||| ||||||| ||||||| ||  ||||||||||||||||||| ||||||||    
T  15061471 tattttcatcattttgtagaattgatcctcctattttaaaatttgacagttttggtc 15061527  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 355
Target Start/End: Original strand, 43344794 - 43344889
Alignment:
Q  260 aggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    ||||||| ||||| |||| ||| |  ||||||||  |||||| |||||||||| ||||||||||||||| ||||  ||||||| || | |||||||    
T  43344794 aggcttaattgcaattttggtctccatattttcattattttgcagaattggtccccctattttaaaattcgacaggtttggtcccttcatcatatt 43344889  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 355
Target Start/End: Original strand, 38275753 - 38275847
Alignment:
Q  261 ggcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    |||||| |||||  ||| ||||| |||||||||||||||||  || |||||  ||||||||||||||| ||   |||||||| |||| |||||||    
T  38275753 ggcttaattgcatatttggtccccctattttcaccattttgccgagttggtacccctattttaaaattcgatggttttggtccctccatcatatt 38275847  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 6638392 - 6638461
Alignment:
Q  286 tattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtctctccctcatatt 355  Q
    ||||||||||| |||  | | ||||| ||||||||||||||||||| | ||||| ||||||| |||||||    
T  6638392 tattttcaccaatttttatatttggtttccctattttaaaatttgatagttttgatctctccatcatatt 6638461  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 346
Target Start/End: Complemental strand, 12857560 - 12857519
Alignment:
Q  305 aattggtctccctattttaaaatttgacaattttggtctctc 346  Q
    ||||||||  |||||||||||||| |||||||||||||||||    
T  12857560 aattggtcctcctattttaaaattggacaattttggtctctc 12857519  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 342
Target Start/End: Complemental strand, 17836 - 17780
Alignment:
Q  286 tattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    |||||||| ||||||| | |||||||||| || ||||||||||  ||||||||||||    
T  17836 tattttcatcattttgtaaaattggtctctctgttttaaaattccacaattttggtc 17780  T

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Target: scaffold0062 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 342
Target Start/End: Original strand, 20220 - 20300
Alignment:
Q  262 gcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    ||||| ||||| ||||||||||| |||| | | ||||||| | ||||| ||||| |||||| ||||| || ||||||||||    
T  20220 gcttaattgcacttttagtccctttattattagcattttgcaaaattgatctccttatttttaaattcgataattttggtc 20300  T

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Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 342
Target Start/End: Original strand, 30388 - 30468
Alignment:
Q  262 gcttatttgcagttttagtccctctattttcaccattttgaagaattggtctccctattttaaaatttgacaattttggtc 342  Q
    ||||| ||||| ||||||||||| |||| | | ||||||| | ||||| ||||| |||||| ||||| || ||||||||||    
T  30388 gcttaattgcacttttagtccctttattattagcattttgcaaaattgatctccttatttttaaattcgataattttggtc 30468  T

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