View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_42 (Length: 366)
Name: NF14353_low_42
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 37420411 - 37420056
Alignment:
| Q |
1 |
cacaagtgttttatcacggaggtggatatacatgtggacgtttgtcacaaaactatattttggagataaaccaatctataagttaaagaaaactagattt |
100 |
Q |
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| T |
37420411 |
cacaagtgttttatcacggaggtggatatacatgtggacgtttgtcacaaaactatattttggagataaaccaatctataagttaaagaaaactagattt |
37420312 |
T |
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| Q |
101 |
atgaactttgtatgcagggtgttgtttcatctgaatagtgcaagcatcgattcattttctttttatctttcagagcagtatgatccctacattatcagtc |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37420311 |
atgaactttgtatgcagggtgttgtttcatcttaatagtgcaagcatcgattcattttctttttatctttcagagcagtatgatccctacattatcagtc |
37420212 |
T |
|
| Q |
201 |
agtggatatctgttgtttcaaatagaaaagtaaaaaagattcatttacgttcgcttgaagaatgcaacatttcagtttatcccattttcaaatgccagac |
300 |
Q |
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| T |
37420211 |
agtggatatctgttgtttcaaatagaaaagtaaaaaagattcatttacgttcgcttgaagaatgcaacatttcagtttatcccattttcaaatgccagac |
37420112 |
T |
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| Q |
301 |
cttggaggaattggtgctggcgttgggtcattctattgtccaatttccatcctttg |
356 |
Q |
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| T |
37420111 |
cttggaggaattggtgctggcgttgggtcattctactgtccgatttccatcctttg |
37420056 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 51939719 - 51939668
Alignment:
| Q |
5 |
agtgttttatcacggaggtggatatacatgtggacgtttgtcacaaaactat |
56 |
Q |
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| T |
51939719 |
agtgctttatcacagaggtggaggtacatgtggacgtttgtcacaaaactat |
51939668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 318
Target Start/End: Complemental strand, 51939429 - 51939388
Alignment:
| Q |
277 |
ttatcccattttcaaatgccagaccttggaggaattggtgct |
318 |
Q |
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| T |
51939429 |
ttatccccttttcaaatgtcagtccttggaggaattggtgct |
51939388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 34747487 - 34747430
Alignment:
| Q |
5 |
agtgttttatcacggaggtggatatacatgtggacgtttgtcacaaaactatattttg |
62 |
Q |
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|||||||||||| ||||||||||||| | ||||| ||| ||||||||||| |||||| |
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| T |
34747487 |
agtgttttatcaaagaggtggatatacctatggacatttatcacaaaactagattttg |
34747430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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