View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_45 (Length: 355)
Name: NF14353_low_45
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 345
Target Start/End: Complemental strand, 3686285 - 3685958
Alignment:
| Q |
18 |
caaacaaattccatatctagatgccttagcagaaatgacgatatctagagcttggtcactccctcacaaaaccactcagcaactagcaagtaaccacttt |
117 |
Q |
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| T |
3686285 |
caaacaaattccatatcttgatgccttggcagaaatgacgatatctagagcttggtccctccctcacaaaaccactcggcaactagcaagtaaccacttt |
3686186 |
T |
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| Q |
118 |
cttttttcttttctccctaacataactgtcatattttatttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatacgtgt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3686185 |
cttttttcttttctccctaacataactgtcatattttttttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatacgtgt |
3686086 |
T |
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| Q |
218 |
ggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttataagaaccaatcacttactgccacatcagttcg |
317 |
Q |
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| T |
3686085 |
ggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttaaaagaaccaatcacttactgccacatcagttcg |
3685986 |
T |
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| Q |
318 |
cgatgcgttcgtgatctatattcttcga |
345 |
Q |
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| T |
3685985 |
cgatgcgttcgtgatctatattcttcga |
3685958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 145 - 344
Target Start/End: Complemental strand, 3693925 - 3693725
Alignment:
| Q |
145 |
gtcatattttatttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgta |
244 |
Q |
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| T |
3693925 |
gtcatattttatttctagtactgttgtttatcaaaaacacacctcatcatgatcttcccgaatcgatacgtgttgtaattataaaggaagaagcagtgta |
3693826 |
T |
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| Q |
245 |
tagttcatgaatgagcggaaatcacagtgtgtatgtgttataag-aaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatattcttc |
343 |
Q |
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| T |
3693825 |
tggttcaggaatgagcggaaatcacagtgtgtatgtgttataagaaaccaatcacttactgccaaatcagttcgtgatgcgttattgatcaatattcttc |
3693726 |
T |
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| Q |
344 |
g |
344 |
Q |
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| T |
3693725 |
g |
3693725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 138 - 326
Target Start/End: Complemental strand, 3679409 - 3679213
Alignment:
| Q |
138 |
cataactgtcatatttt-atttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatac---gt----gtggtaattataaa |
229 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| || || |||||||| || |
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| T |
3679409 |
cataactgtcatattttcatttctagtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaa |
3679310 |
T |
|
| Q |
230 |
ggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttataag-aaccaatcacttactgccacatcagttcgcgatgcgtt |
326 |
Q |
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| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| |||| |||| |||||||| |
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| T |
3679309 |
g-aagaagtagtgtatagttcaggaatgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtt |
3679213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 150 - 344
Target Start/End: Complemental strand, 3675716 - 3675532
Alignment:
| Q |
150 |
attttatttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagtt |
249 |
Q |
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||||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
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| T |
3675716 |
attttatttctagtactactatttatcaagaacacatctcaccatgatcttcccgaatcgattcgtgttgtaattataaaggaagaagcagtgtatagtt |
3675617 |
T |
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| Q |
250 |
catgaatgagcggaaatcacagtgtgtatgtgttataagaaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatattcttcg |
344 |
Q |
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| |||||||||||||| |||| ||| |||||||| ||||| ||||||||||| | |||||||||||||||||||||||||| |
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| T |
3675616 |
ctggaatgagcggaaatgacagcacgtaagtgttata----------acttataaccacatcagtttgtgatgcgttcgtgatctatattcttcg |
3675532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Complemental strand, 3703333 - 3703297
Alignment:
| Q |
18 |
caaacaaattccatatctagatgccttagcagaaatg |
54 |
Q |
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|||| |||||||||||||||||||||||||| ||||| |
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| T |
3703333 |
caaataaattccatatctagatgccttagcaaaaatg |
3703297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 34676702 - 34676634
Alignment:
| Q |
64 |
agagcttggtcactccctcacaaaaccactcagcaactagcaagtaaccactttcttttttcttttctc |
132 |
Q |
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||||||| ||| |||||||||| ||||||||| ||||| | | ||||||||||| |||||||||||| |
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| T |
34676702 |
agagctttgtctctccctcacataaccactcaagaactacccaataaccactttcccttttcttttctc |
34676634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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