View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_47 (Length: 343)
Name: NF14353_low_47
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 22 - 212
Target Start/End: Complemental strand, 25100247 - 25100057
Alignment:
| Q |
22 |
aattacgttggttgttatttgttaggctttttgtcattgcaattgaagaaaaaattaatttagaaaaataaaatgaggagacacatgaattcaaccaatg |
121 |
Q |
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| T |
25100247 |
aattacgttggttattatttgttaggctttttgtcattgcaattgaagaaaaaattaatttagaaaaataaaatgaggagacacatgaattcaatcaatg |
25100148 |
T |
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| Q |
122 |
aatcacacgtaggttagtggaaagagattgaagctgatgagtaacttctttactcacattttgcacgttcacgtataaattaatagtactg |
212 |
Q |
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| T |
25100147 |
aatcacacgtaggttagtggaaagagattgaagctgatgagtaacttctttactcacattttgcacgttcacgtataaattaatagtactg |
25100057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 261 - 343
Target Start/End: Complemental strand, 25100006 - 25099924
Alignment:
| Q |
261 |
ggaaaatagtactattcatcttttgttgaagaaagtcaaatttcatactatgttttgagaaatatttacttgtgaagttgttt |
343 |
Q |
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| T |
25100006 |
ggaaaatagtactatttatcttttgttgaaaaaagtcaaatttcatactatgttttgagaaatatttacttgtgaagttgttt |
25099924 |
T |
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