View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_5 (Length: 691)
Name: NF14353_low_5
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 265 - 674
Target Start/End: Original strand, 51821586 - 51821995
Alignment:
| Q |
265 |
ttactatagttctattgtctcaatctatataattgatggtgaaaataatgatgcagctactgttgtggaatatttttctgattctaaaaaacaaacaaat |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51821586 |
ttactatagttctattgtctcaatctatataattgatggtgaaaataatgatgcagctactgttgtggaatatttttctgattctaaaaaacaagcaaat |
51821685 |
T |
|
| Q |
365 |
gaagatgattcatcagaggatcccatttacaagtgctatgaggccgttttagattctaaagctaaggatgaaacattggtaagtctgtgcccttttttgt |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
51821686 |
gaagatgattcatcagaggatcccatttacaagtgctatgaggccgttttagattctaaagctagggatgaaacactggtaagtctgtgcccttttttgt |
51821785 |
T |
|
| Q |
465 |
caagtaaagtatactaggaatttcccttcattttttatnnnnnnngtatatcagaaatttgtttttgtaacagaagatcttacagtgttgaattaaacag |
564 |
Q |
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|||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51821786 |
caagtaaagtatactaggaatttccctttattttttataaaaaaagtatatcaggaatttgtttttgtaacagaagatcttacagtgttgaattaaacag |
51821885 |
T |
|
| Q |
565 |
gcattgcaagcaagttgggagccaagatactcaagatgctgccagagaatcccatggcagcaatatgcaaaagtaggagcttctcttcgccattttagtt |
664 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51821886 |
gcattgcaagcaagttgggagccaagatactcaaaatgctgccagagaatcccatggcagcaatatgcaaaagtaggagcttctcttcgccattttagtt |
51821985 |
T |
|
| Q |
665 |
acactgttgt |
674 |
Q |
| |
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|||||||||| |
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|
| T |
51821986 |
acactgttgt |
51821995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 51821337 - 51821532
Alignment:
| Q |
16 |
atatgcatcggcgttggtctttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcgaaacttgaag |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
51821337 |
atatgcatcggcgttggtctttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcaaaacttgaag |
51821436 |
T |
|
| Q |
116 |
gcttagccaactctgtagaaggtaaaaagccaagtcaccacttcattaaagaatattgcttatgtttgtgaaacaagaactgctgaagagtatttg |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51821437 |
gcttagccaactctgtagaaggtaaaaagccaggtcaccacttcattaaagaatattgcttatgtttgtgaaacaagaactgctgaagagtatttg |
51821532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 287 - 674
Target Start/End: Original strand, 51851368 - 51851754
Alignment:
| Q |
287 |
atctatataattgatggtgaaaataatgatgcagctactgttgtggaatatttttctgattctaaaaaacaaacaaatgaagatgattcatcagaggatc |
386 |
Q |
| |
|
|||| ||||||||| |||||| |||||||||| | |||| |||||||||||| ||||||| |||||||| ||||||| ||||||||| ||||||| |
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|
| T |
51851368 |
atctttataattgaatatgaaaacaatgatgcagtttctgtcatggaatatttttatgattctgaaaaacaagcaaatga---tgattcatctgaggatc |
51851464 |
T |
|
| Q |
387 |
ccatttacaagtgctatgaggccgttttagattctaaagctaaggatgaaacattggtaagtctgtg-cccttttttgtcaagtaaagtatactaggaat |
485 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||| |||||||||||||| ||||||| ||| |||||||||||||||||||||||| || ||| |
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| T |
51851465 |
tcatttacaagtgctacgaggccgttttagactctaaatctaaggatgaaacactggtaagctagtgtcccttttttgtcaagtaaagtatataagaaat |
51851564 |
T |
|
| Q |
486 |
ttcccttc--attttttat-nnnnnnngtatatcagaaatttgt-ttttgtaacagaagatcttacagtgttgaattaaacaggcattgcaagcaagttg |
581 |
Q |
| |
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| |||||| |||||||| |||||||||||||| || ||||| | ||||||||| ||| | ||| ||||||||| | ||||||| ||| |
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| T |
51851565 |
tccccttctatttttttataaaagaaagtatatcagaaattggtactttgtgatagaagatct---agtttcgaaataaacaggctatacaagcaaattg |
51851661 |
T |
|
| Q |
582 |
ggagccaagatactcaagatgctgccagagaatcccatggcagcaatatgcaaaagtaggagcttctcttcgccattttagttacactgttgt |
674 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
51851662 |
ggagccaagatactcaagatgctgccacaggatcccatggcagcaatatgcaaaagtaggagctgctcttcgccattttagttacaccgttgt |
51851754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 273 - 439
Target Start/End: Original strand, 51861487 - 51861653
Alignment:
| Q |
273 |
gttctattgtctcaatctatataattgatggtgaaaataatgatgcagctactgttgtggaatatttttctgattctaaaaaacaaacaaatgaagatga |
372 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| ||||||| |||||||| ||||||||||||| |
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| T |
51861487 |
gttctattgtatcaatctatataactgatggtgaaaataatgatgcagttactgttgtggactatttttatgattctgaaaaacaagcaaatgaagatga |
51861586 |
T |
|
| Q |
373 |
ttcatcagaggatcccatttacaagtgctatgaggccgttttagattctaaagctaaggatgaaaca |
439 |
Q |
| |
|
|||||| |||||||| |||||||||||||| || || |||||||| ||||||||||||||||||||| |
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|
| T |
51861587 |
ttcatccgaggatcctatttacaagtgctacgaagctgttttagactctaaagctaaggatgaaaca |
51861653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 16 - 142
Target Start/End: Original strand, 51861296 - 51861422
Alignment:
| Q |
16 |
atatgcatcggcgttggtctttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcgaaacttgaag |
115 |
Q |
| |
|
|||||||||||||||| | |||||||||| |||| |||||||||||||| || |||||||| |||||||||||||||||||||||||| || ||||||| |
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|
| T |
51861296 |
atatgcatcggcgttgctatttgtcttgtgatgaccctatttgtatttccaaactggtcaggtgaagaccttcataaatccaccatatcaaagcttgaag |
51861395 |
T |
|
| Q |
116 |
gcttagccaactctgtagaaggtaaaa |
142 |
Q |
| |
|
|||||||||||||| |||||||||||| |
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|
| T |
51861396 |
gcttagccaactctatagaaggtaaaa |
51861422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 554 - 674
Target Start/End: Original strand, 51861734 - 51861854
Alignment:
| Q |
554 |
gaattaaacaggcattgcaagcaagttgggagccaagatactcaagatgctgccagagaatcccatggcagcaatatgcaaaagtaggagcttctcttcg |
653 |
Q |
| |
|
||||| |||||||| ||||||| | |||||||||||||||||||||| ||||||| || ||||||||||| |||||||||||||| ||| |||||||||| |
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|
| T |
51861734 |
gaattgaacaggcaatgcaagctaattgggagccaagatactcaagaagctgccataggatcccatggcaacaatatgcaaaagtcggaacttctcttcg |
51861833 |
T |
|
| Q |
654 |
ccattttagttacactgttgt |
674 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
51861834 |
tcattttagttacactgttgt |
51861854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 16 - 140
Target Start/End: Original strand, 51851144 - 51851268
Alignment:
| Q |
16 |
atatgcatcggcgttggtctttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcgaaacttgaag |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||| || ||||||||||||||||| || ||||||| |
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|
| T |
51851144 |
atatgcataggcgttggtctttgtcttgtgatgagcctatttgtatttccaaactggtcaggggaagaactccataaatccaccatatcaaagcttgaag |
51851243 |
T |
|
| Q |
116 |
gcttagccaactctgtagaaggtaa |
140 |
Q |
| |
|
| |||||||| || |||||||||| |
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|
| T |
51851244 |
gattagccaaatccatagaaggtaa |
51851268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 51376023 - 51375983
Alignment:
| Q |
362 |
aatgaagatgattcatcagaggatcccatttacaagtgcta |
402 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
51376023 |
aatgaagatgattcatctgaggatcccgtttacaagtgcta |
51375983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 35 - 139
Target Start/End: Original strand, 40634312 - 40634416
Alignment:
| Q |
35 |
tttgtcttgttatgagtctatttgtatttccgaattggtcaggggaagaccttcataaatccaccatatcgaaacttgaaggcttagccaactctgtaga |
134 |
Q |
| |
|
|||||||| | |||||||| || |||||||| |||||||||||||||||||||||| | ||||| | |||||||||||| | ||||| ||| |||| |
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|
| T |
40634312 |
tttgtcttttcatgagtcttttagtatttccaaattggtcaggggaagaccttcatcattccacagctttcaaacttgaaggccttgccaaatctataga |
40634411 |
T |
|
| Q |
135 |
aggta |
139 |
Q |
| |
|
||||| |
|
|
| T |
40634412 |
aggta |
40634416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 89 - 135
Target Start/End: Complemental strand, 42454276 - 42454230
Alignment:
| Q |
89 |
ataaatccaccatatcgaaacttgaaggcttagccaactctgtagaa |
135 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||| |||| ||||| |
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|
| T |
42454276 |
ataaatccaccatatcaaagcttgaaggcttagccatctctatagaa |
42454230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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