View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14353_low_50 (Length: 330)
Name: NF14353_low_50
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_50 |
 | |
|
| [»] scaffold0221 (1 HSPs) |
| | |
|
| [»] scaffold0208 (1 HSPs) |
| | |
|
| [»] scaffold0581 (1 HSPs) |
| | |
|
| [»] scaffold0534 (1 HSPs) |
| | |
|
| [»] scaffold0023 (1 HSPs) |
| | |
|
| [»] scaffold0455 (1 HSPs) |
| | |
|
| [»] scaffold0036 (1 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 1375845 - 1375545
Alignment:
| Q |
20 |
gtgagcaccagttataagatgataccccagctggatcttctaatatgtgcacatattggagagatacaaagctactattagtggggcacaaaattttgtg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1375845 |
gtgagcaccagttataagatgataccccaactggatcttctaatatgtgcgcatattggagagatacaaagctactattagtgggacacaaaattttgtg |
1375746 |
T |
|
| Q |
120 |
aatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataattt |
219 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1375745 |
aatgataaaacagattgcacccttcacccacgtttttggtttctctagtgtcttcaatattctctccaaatctgccaccttcaaaaaaggtgaataattt |
1375646 |
T |
|
| Q |
220 |
ccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccctat |
319 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1375645 |
tcatccagtcctaattttgtcctcaatctctttattgctgcatcagagcagagatcaacgttaatctgcttccccgccattggaagctcatacaccctat |
1375546 |
T |
|
| Q |
320 |
g |
320 |
Q |
| |
|
| |
|
|
| T |
1375545 |
g |
1375545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 137 - 320
Target Start/End: Complemental strand, 17623143 - 17622960
Alignment:
| Q |
137 |
cacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataatttccatctagtcctaattt |
236 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
17623143 |
cacccttcacccacacttttggtttctctagtgacttcaatattctctccaaatctgccaccttcacaaaaggtgaataattttcattcagtcctaattt |
17623044 |
T |
|
| Q |
237 |
tgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccctatg |
320 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17623043 |
tgtcctcaatctctttattgttgcatcagagcagagatcgatgttaatctgcttccccgccattggaagctcatacaccctatg |
17622960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 137 - 320
Target Start/End: Complemental strand, 17630326 - 17630143
Alignment:
| Q |
137 |
cacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataatttccatctagtcctaattt |
236 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
17630326 |
cacccttcacccacacttttggtttctctagtgacttcaatattctctccaaatctgccaccttcacaaaaggtgaataattttcattcagtcctaattt |
17630227 |
T |
|
| Q |
237 |
tgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccctatg |
320 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17630226 |
tgtcctcaatctctttattgttgcatcagagcagagatcgatgttaatctgcttccccgccattggaagctcatacaccctatg |
17630143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 302
Target Start/End: Original strand, 11980328 - 11980551
Alignment:
| Q |
79 |
agagatacaaagctactattagtggggcacaaaattttgtgaatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaata |
178 |
Q |
| |
|
||||| || ||||| || ||| |||||||||| || |||||||| |||| ||| ||| ||||||| ||||| || ||||||||||| | | |||||| | |
|
|
| T |
11980328 |
agagaaactaagctgctgttattggggcacaacatgttgtgaattataagacaaattgcaccctttacccatgcctttggtttctccattttcttcagtc |
11980427 |
T |
|
| Q |
179 |
ttctctccaaatctgccaccttcacaaaaggtgaataatttccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgac |
278 |
Q |
| |
|
|| ||||||| |||| | |||| ||||| || ||||||| ||||| | |||||| | | ||| | |||||| |||| ||| || ||||| || | | |
|
|
| T |
11980428 |
ttatctccaactctgtcgccttgacaaatggagaataatcaccatccaatcctaactctaccctgagtctcttaattgctgcttctgagcaaagtttaat |
11980527 |
T |
|
| Q |
279 |
gttaatctgcttccccgccattgg |
302 |
Q |
| |
|
||| ||||||| |||||||||||| |
|
|
| T |
11980528 |
gttgatctgctcccccgccattgg |
11980551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 30 - 320
Target Start/End: Complemental strand, 9554045 - 9553755
Alignment:
| Q |
30 |
gttataagatgataccccagctggatcttctaatatgtgcacatattggagagatacaaagctactattagtggggcacaaaattttgtgaatgataaaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
9554045 |
gttataagatgataccccagctggatcttctaatatgtgagcatattggagagattcaaagctactattagtggggcacaaaattttgtggatgataaaa |
9553946 |
T |
|
| Q |
130 |
cagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataatttccatctagtc |
229 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||| |
|
|
| T |
9553945 |
cagattgcactcttcacccacgcttttggtttatctagtgtcttcaatattctctccaaatctgtcaccttcacaaaaggataataatttccatccagtc |
9553846 |
T |
|
| Q |
230 |
ctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccctatg |
320 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9553845 |
ctaattttgtcctcaatctctttattgttgcatcagagcagagatcgacgttaatctacttccccgccattggaagctcatacaccctatg |
9553755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 111 - 316
Target Start/End: Original strand, 54757778 - 54757983
Alignment:
| Q |
111 |
aattttgtgaatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggt |
210 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||| |||||||| |||||| | ||||||||||||||||||||| | |||| | ||| ||| |
|
|
| T |
54757778 |
aattttgtgaatgataaaacatattgcacccttcacccaagcttttggattctcttgagtcttcaatattctctccaaattagtcacccttacagaagca |
54757877 |
T |
|
| Q |
211 |
gaataatttccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcat |
310 |
Q |
| |
|
||||||||||||| || ||||||| | ||||||||||||| |||| | | ||||||||||||| | |||||||||||||||| ||||||||||||||| |
|
|
| T |
54757878 |
gaataatttccattcagccctaattctatcctcaatctcttaattgcttccacagagcagagatcaaggttaatctgcttccccaccattggaagctcat |
54757977 |
T |
|
| Q |
311 |
acaccc |
316 |
Q |
| |
|
| |||| |
|
|
| T |
54757978 |
agaccc |
54757983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0221 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: scaffold0221
Description:
Target: scaffold0221; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 24131 - 23831
Alignment:
| Q |
20 |
gtgagcaccagttataagatgataccccagctggatcttctaatatgtgcacatattggagagatacaaagctactattagtggggcacaaaattttgtg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
24131 |
gtgagcaccagttataagatgataccccagctggatcttctaatatgtgcgcatattggagagatacaaagctactattagtggggcacaaaatgttgtg |
24032 |
T |
|
| Q |
120 |
aatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataattt |
219 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24031 |
aatgataaaacagattgcacccttcacccatgcttttggttgctctagtgtcttcaatattctctccaaatctgccaccttcacaaaaggtgaataattt |
23932 |
T |
|
| Q |
220 |
ccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccctat |
319 |
Q |
| |
|
|||| | |||||||| |||||||||||||||||||| | | |||||||||| ||| ||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
23931 |
tcatcaaatcctaattctgtcctcaatctctttattgcttcttcagagcagatatcaacgttaatctgcttccctgtcattggaagctcatacaccctat |
23832 |
T |
|
| Q |
320 |
g |
320 |
Q |
| |
|
| |
|
|
| T |
23831 |
g |
23831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 18757509 - 18757808
Alignment:
| Q |
20 |
gtgagcaccagttataagatgataccccagctggatcttctaatatgtgcacatattggagagatacaaagctactattagtggggcacaaaattttgtg |
119 |
Q |
| |
|
|||||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18757509 |
gtgagcaccagtaataag-tgatatcccagctggatcttctaatatgtgcgcatattggaaagatacaaagctactatgagtggggcacaaaattttgtg |
18757607 |
T |
|
| Q |
120 |
aatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataattt |
219 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||| | |||||||| |
|
|
| T |
18757608 |
aatgataaaacagattgcacccttcacccacgcttttggtttttctagtgtcttcaatattctcttcaaatctgccaccttcacaaaagataaataattt |
18757707 |
T |
|
| Q |
220 |
ccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccctat |
319 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18757708 |
ccatccagtactaattttgtcctcaatctctttattgctgcttcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccctat |
18757807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 18758537 - 18758243
Alignment:
| Q |
20 |
gtgagcaccagttataagatgataccccagctggatcttctaatatgtgcacatattggagagatacaaagctactattagtggggcacaaaattttgtg |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
18758537 |
gtgagcaccagtaataagatgataccccagctggatcttttaatatgtgcgcatattggaaagatacaaaactactattagtggggcacaaaattttgtg |
18758438 |
T |
|
| Q |
120 |
aatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataattt |
219 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
18758437 |
aatgataaaacagattgcacccttcacccacgcatttagtttctctagtgtcttcaatattctctccaaatctgtcaccttcacaaaagatgaataattt |
18758338 |
T |
|
| Q |
220 |
ccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccctat |
319 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18758337 |
ccatctagtcataattttgtcatcaatctctttattg------cagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccctat |
18758244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 137 - 316
Target Start/End: Original strand, 28128633 - 28128812
Alignment:
| Q |
137 |
cacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataatttccatctagtcctaattt |
236 |
Q |
| |
|
||||||||| ||| |||||||| |||||| | ||||||||||||| |||||||| | |||| ||||| ||| ||||||||||||| || ||||||| |
|
|
| T |
28128633 |
cacccttcatccaagcttttggattctcttgagtcttcaatattctatccaaatcagtcaccctcacagaagcagaataatttccattcagccctaattc |
28128732 |
T |
|
| Q |
237 |
tgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccc |
316 |
Q |
| |
|
| ||||||||||||| |||| | | | ||||||||||| | |||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
28128733 |
tatcctcaatctcttaattgcttccactgagcagagatcaatgttaatttgcttccccgccattggaagctcatagaccc |
28128812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 302
Target Start/End: Complemental strand, 22033221 - 22032998
Alignment:
| Q |
79 |
agagatacaaagctactattagtggggcacaaaattttgtgaatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaata |
178 |
Q |
| |
|
||||| || ||||| || ||||||||||||||||| |||||||| |||| ||| ||| |||| || ||||| || ||||||||||| | |||||||| | |
|
|
| T |
22033221 |
agagaaactaagctgctgttagtggggcacaaaatgttgtgaattataagacaaattgcaccatttacccatgcctttggtttctccattatcttcagtc |
22033122 |
T |
|
| Q |
179 |
ttctctccaaatctgccaccttcacaaaaggtgaataatttccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgac |
278 |
Q |
| |
|
|| ||||||| |||| | |||| ||||| || ||||||| ||||| | |||||| | | ||| | | ||||||||| ||| || ||||| || | | |
|
|
| T |
22033121 |
ttatctccaactctgtcgccttgacaaatggagaataatcaccatccaatcctaactctaccctgagtttctttattgctgcttctgagcaaagtttaat |
22033022 |
T |
|
| Q |
279 |
gttaatctgcttccccgccattgg |
302 |
Q |
| |
|
||| ||||||| |||||||||||| |
|
|
| T |
22033021 |
gttgatctgctcccccgccattgg |
22032998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 284
Target Start/End: Original strand, 18757209 - 18757248
Alignment:
| Q |
245 |
atctctttattgatgcatcagagcagagatcgacgttaat |
284 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
18757209 |
atctctttattgctgcatcagagcaaagatcgacgttaat |
18757248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 181; Significance: 9e-98; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 9e-98
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 42774560 - 42774260
Alignment:
| Q |
20 |
gtgagcaccagttataagatgataccccagctggatcttctaatatgtgcacatattggagagatacaaagctactattagtggggcacaaaattttgtg |
119 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| |||||||||||||||| | |||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
42774560 |
gtgagcaccaattataatatgataccccagccggatcttctaatatgtacgcatattggagagatacaaagttactattagtcgggcacaaaattttgtg |
42774461 |
T |
|
| Q |
120 |
aatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataattt |
219 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||| |||| ||||| ||| |||||||| | |
|
|
| T |
42774460 |
aatgataaaacaaattgcacccttcacccaagcttttggtttctctagtgtcttcaatattctttccaaatctgtcaccctcacagaagctgaataatat |
42774361 |
T |
|
| Q |
220 |
ccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccctat |
319 |
Q |
| |
|
|||| ||||| |||| | |||||||| ||||||||| | | ||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||| |
|
|
| T |
42774360 |
ccattcagtcccaattctttcctcaatttctttattgcttcctcagagcagagatcgacgttaatcttcttcccttccattgggagctcatacaccctat |
42774261 |
T |
|
| Q |
320 |
g |
320 |
Q |
| |
|
| |
|
|
| T |
42774260 |
g |
42774260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 10567076 - 10566777
Alignment:
| Q |
20 |
gtgagcaccagttataagatgataccccagctggatcttctaatatgtgcacatattggagagatacaaagctactattagtggggcacaaaattttgtg |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
10567076 |
gtgagcaccagttataagatgatacaccagctggatcttctaatatgtgcgcatattggagagatacaaaactattattagtggggcacaaaattttgtg |
10566977 |
T |
|
| Q |
120 |
aatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataattt |
219 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||| |||| | || ||||||||||||||||||||||| |||| ||||| ||| |||||||| |
|
|
| T |
10566976 |
aatgatgaaacagattgcacccttcacccacgcttttggattct-ttgtgtcttcaatattctctccaaatctatcaccctcacagaagcaaaataattt |
10566878 |
T |
|
| Q |
220 |
ccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccctat |
319 |
Q |
| |
|
|||| || | ||||| | |||||||||||| |||| | | ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10566877 |
ccattcagccttaattctatcctcaatctctcaattgcttccacagagcagagatcagcgttaatctgcttccccgccattggaagctcatagaccctat |
10566778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 10568858 - 10569157
Alignment:
| Q |
20 |
gtgagcaccagttataagatgataccccagctggatcttctaatatgtgcacatattggagagatacaaagctactattagtggggcacaaaattttgtg |
119 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
10568858 |
gtgagcaccagttataagatgatactccagctggatcttctaatatgtgcgcatattggagagatacaaaactattattagtggggcacaaaattttgtg |
10568957 |
T |
|
| Q |
120 |
aatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataattt |
219 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||| |||| | || ||||||||||||||||||||||| |||| ||||| ||| |||||||| |
|
|
| T |
10568958 |
aatgatgaaacagattgcacccttcacccacgcttttggattct-ttgtgtcttcaatattctctccaaatctatcaccctcacagaagcaaaataattt |
10569056 |
T |
|
| Q |
220 |
ccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccctat |
319 |
Q |
| |
|
|||| || | ||||| | |||||||||||| |||| | | ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10569057 |
ccattcagccttaattctatcctcaatctctcaattgcttccacagagcagagatcagcgttaatctgcttccccgccattggaagctcatagaccctat |
10569156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 71 - 256
Target Start/End: Complemental strand, 10565987 - 10565802
Alignment:
| Q |
71 |
catattggagagatacaaagctactattagtggggcacaaaattttgtgaatgataaaacagattacacccttcacccacgcttttggtttctctagtat |
170 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| || | |
|
|
| T |
10565987 |
catattggagagatacaaaactactattagtggggcacaaaattttgtgaatgataaaacagattgcacccttcacccacgcttttggattctcttgtgt |
10565888 |
T |
|
| Q |
171 |
cttcaatattctctccaaatctgccaccttcacaaaaggtgaataatttccatctagtcctaattttgtcctcaatctctttattg |
256 |
Q |
| |
|
|||||||||| ||||||||||| |||| ||||| ||| ||||||||||||| || | ||||| | |||| |||||||| |||| |
|
|
| T |
10565887 |
cttcaatattttctccaaatctatcaccctcacagaagcagaataatttccattcagccttaattctatccttaatctcttaattg |
10565802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 316
Target Start/End: Complemental strand, 19940 - 19644
Alignment:
| Q |
20 |
gtgagcaccagttataagatgataccccagctggatcttctaatatgtgcacatattggagagatacaaagctactattagtggggcacaaaattttgtg |
119 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
19940 |
gtgagcaccagttataagaatataccccaactggatcttctaatatgtgcgcatattggagagatacaaagctactattagtggggcataatattttgtg |
19841 |
T |
|
| Q |
120 |
aatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataattt |
219 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||| |||||| || |||||||||||||||||||||| | |||| ||||| ||| ||||||||| |
|
|
| T |
19840 |
aatgataaaacatattgcacccttcacccaagcttttggattctcttgtgtcttcaatattctctccaaatcagtcaccctcacagaagcagaataattt |
19741 |
T |
|
| Q |
220 |
ccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccc |
316 |
Q |
| |
|
|||| | ||||||| | ||||||||||||| |||| | | ||||||||||||| | ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19740 |
ccattcaaccctaattctatcctcaatctcttaattgcttccacagagcagagatcaatgttaatctgcttccccgccattggaagctcatagaccc |
19644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 3658 - 3954
Alignment:
| Q |
20 |
gtgagcaccagttataagatgataccccagctggatcttctaatatgtgcacatattggagagatacaaagctactattagtggggcacaaaattttgtg |
119 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
3658 |
gtgagcaccaattataagaagataccccggctggatcttctaatatgtgcgcatattggagagatacgaagctactattagttgggcacaaaattttgtg |
3757 |
T |
|
| Q |
120 |
aatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataattt |
219 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||| |||||| | |||||||||||||||||||||| | |||| ||||| ||| ||||||||| |
|
|
| T |
3758 |
aatgataaaacatattgcacccttcacccaagcttttggattctcttgagtcttcaatattctctccaaatcagtcaccctcacagaagcagaataattt |
3857 |
T |
|
| Q |
220 |
ccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccc |
316 |
Q |
| |
|
|||| || ||||||| | ||||||||||||| |||| | | ||||||||||||| | |||||||||||||||| |||||||||||||||| |||| |
|
|
| T |
3858 |
ccattcagccctaattctatcctcaatctcttaattgcttccacagagcagagatcaaggttaatctgcttccccaccattggaagctcatagaccc |
3954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 22 - 316
Target Start/End: Original strand, 17229496 - 17229790
Alignment:
| Q |
22 |
gagcaccagttataagatgataccccagctggatcttctaatatgtgcacatattggagagatacaaagctactattagtggggcacaaaattttgtgaa |
121 |
Q |
| |
|
||||| ||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
17229496 |
gagcatcagttataagaagataccctagctggatcttctaatatgtgcgtatattggagagatacgaagctactattagttgggcacaaaattttgtgat |
17229595 |
T |
|
| Q |
122 |
tgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataatttcc |
221 |
Q |
| |
|
| |||||||| ||| ||||||||||||| |||||||| |||||| | |||||||||||||||||||||| | |||| ||||| ||| ||||||||||| |
|
|
| T |
17229596 |
ttataaaacatattgcacccttcacccaagcttttggattctcttgagtcttcaatattctctccaaatcagtcaccctcacagaagcagaataatttcc |
17229695 |
T |
|
| Q |
222 |
atctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccc |
316 |
Q |
| |
|
|| || ||||||||| ||||||||||||| |||| | || ||||||||||||| | ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17229696 |
attcagccctaattttatcctcaatctcttaattgcttcaacagagcagagatcaatgttaatctgcttccccgccattggaagctcatagaccc |
17229790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 22 - 316
Target Start/End: Complemental strand, 17052045 - 17051751
Alignment:
| Q |
22 |
gagcaccagttataagatgataccccagctggatcttctaatatgtgcacatattggagagatacaaagctactattagtggggcacaaaattttgtgaa |
121 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||||| || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
17052045 |
gagcaccacttataagaagataccccagctggatcttctaatatttttgcatattggagagagacgaagctactattagttgggcacaaaattttgtgaa |
17051946 |
T |
|
| Q |
122 |
tgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataatttcc |
221 |
Q |
| |
|
| |||||||| ||| ||||||||||||| |||||||| |||||| | ||||||||| |||||||||||| | |||| ||||| ||| ||||||||||| |
|
|
| T |
17051945 |
ttataaaacatattgcacccttcacccaagcttttggattctcttgagtcttcaataatctctccaaatcagtcaccctcacagaagcagaataatttcc |
17051846 |
T |
|
| Q |
222 |
atctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccc |
316 |
Q |
| |
|
|| | ||||||| | ||||||||||||| |||| | | | ||||||||||| | |||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
17051845 |
attcacccctaattctatcctcaatctcttaattgcttccacggagcagagatcaatgttaatctgcttccccgcaattggaagctcatagaccc |
17051751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 147; Significance: 2e-77; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 22 - 316
Target Start/End: Complemental strand, 5707 - 5413
Alignment:
| Q |
22 |
gagcaccagttataagatgataccccagctggatcttctaatatgtgcacatattggagagatacaaagctactattagtggggcacaaaattttgtgaa |
121 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
5707 |
gagcaccagttataagaagataccccagctggatcttctaatatttgtgcatattggagagagacgaagctactattagttgggcacaaaattttgtgaa |
5608 |
T |
|
| Q |
122 |
tgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataatttcc |
221 |
Q |
| |
|
| |||||||| ||| ||||||||||||| |||||||| |||||| | ||||||||| |||||| ||||| | |||| ||||| ||| ||||||||||| |
|
|
| T |
5607 |
ttataaaacatattgcacccttcacccaagcttttggattctcttgagtcttcaataatctctcaaaatcagtcaccctcacagaagcagaataatttcc |
5508 |
T |
|
| Q |
222 |
atctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccc |
316 |
Q |
| |
|
|| || ||||||| | ||||||||||||| |||| | | | ||||||||||| | ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5507 |
attcagccctaattctatcctcaatctcttaattgcttccacggagcagagatcaatgttaatctgcttccccgccattggaagctcatagaccc |
5413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 19849809 - 19850104
Alignment:
| Q |
20 |
gtgagcaccagttataagatgataccccagctggatcttctaatatgtgcacatattggagagatacaaagctactattagtggggcacaaaattttgtg |
119 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||||||| ||||| |||||||||||||||| || ||||| ||||||||||||||||||||||| |
|
|
| T |
19849809 |
gtgagcaccagttataagaagataccccaactggatcttctaatgtgtgcgcatattggagagatacgaacctactgttagtggggcacaaaattttgtg |
19849908 |
T |
|
| Q |
120 |
aatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataattt |
219 |
Q |
| |
|
|||||||||||| ||| ||||||||||||| |||||||| || || || |||||||||||||||||||||| | |||| ||||| ||| |||||||| |
|
|
| T |
19849909 |
aatgataaaacatattgcacccttcacccaagcttttggattttcatgtgtcttcaatattctctccaaatcagtcaccctcacagaagcataataattt |
19850008 |
T |
|
| Q |
220 |
ccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccc |
316 |
Q |
| |
|
|||| || ||||||| | ||||| ||||||| |||| | | ||||||||||||| | ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
19850009 |
ccattcagccctaattctatcctc-atctcttaattgcttccacagagcagagatcaatgttaacatgcttccccgccattggaagctcatagaccc |
19850104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 126058 - 125922
Alignment:
| Q |
22 |
gagcaccagttataagatgataccccagctggatcttctaatatgtgcacatattggagagatacaaagctactattagtggggcacaaaattttgtgaa |
121 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||| || |||||||||||||| ||||||||||||||||||| |
|
|
| T |
126058 |
gagcaccagttataagaagataccccagctggatcttctaatatttgtgcatattggagagagacgaagctactattagttgggcacaaaattttgtgaa |
125959 |
T |
|
| Q |
122 |
tgataaaacagattacacccttcacccacgcttttgg |
158 |
Q |
| |
|
| |||||||| ||| |||| |||||||| |||||||| |
|
|
| T |
125958 |
ttataaaacatattgcaccattcacccaagcttttgg |
125922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 137 - 316
Target Start/End: Original strand, 7220 - 7399
Alignment:
| Q |
137 |
cacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccaccttcacaaaaggtgaataatttccatctagtcctaattt |
236 |
Q |
| |
|
||||||||| ||| |||||||| |||||| | ||||||||||||| |||||||| | |||| ||||| ||| ||||||||||||| || ||||||| |
|
|
| T |
7220 |
cacccttcatccaagcttttggattctcttgagtcttcaatattctatccaaatcagtcaccctcacagaagcagaataatttccattcagccctaattc |
7319 |
T |
|
| Q |
237 |
tgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccattggaagctcatacaccc |
316 |
Q |
| |
|
| ||||||||||||| |||| | | ||||||||||||| | |||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
7320 |
tatcctcaatctcttaattgcttccacagagcagagatcaatgttaatatgcttccccgccattggaagctcatagaccc |
7399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 79 - 302
Target Start/End: Original strand, 107355 - 107578
Alignment:
| Q |
79 |
agagatacaaagctactattagtggggcacaaaattttgtgaatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaata |
178 |
Q |
| |
|
||||| || ||||| || ||||||||||||||||| |||||||| |||| ||| ||| ||||||| ||||| || ||||||||||| | |||||||| | |
|
|
| T |
107355 |
agagaaactaagctgctgttagtggggcacaaaatgttgtgaattataagacaaattgcaccctttacccatgcctttggtttctccattatcttcagtc |
107454 |
T |
|
| Q |
179 |
ttctctccaaatctgccaccttcacaaaaggtgaataatttccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgac |
278 |
Q |
| |
|
|| ||||||| |||| | |||| ||||| || ||||||| ||||| | |||||| | | ||| | ||||||||||| ||| || ||||| || | | |
|
|
| T |
107455 |
ttatctccaactctgtcgccttgacaaatggagaataatcaccatccaatcctaactctaccctgagtctctttattgctgcttctgagcaaagtttaat |
107554 |
T |
|
| Q |
279 |
gttaatctgcttccccgccattgg |
302 |
Q |
| |
|
||| ||||||| |||||||||||| |
|
|
| T |
107555 |
gttgatctgctcccccgccattgg |
107578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 79 - 302
Target Start/End: Complemental strand, 44343372 - 44343149
Alignment:
| Q |
79 |
agagatacaaagctactattagtggggcacaaaattttgtgaatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaata |
178 |
Q |
| |
|
||||| || ||||| || ||||||||||||||||| |||||||| |||| ||| ||| |||| || ||||| || ||||||||||| | |||||||| | |
|
|
| T |
44343372 |
agagaaactaagctgctgttagtggggcacaaaatgttgtgaattataagacaaattgcaccatttacccatgcctttggtttctccattatcttcagtc |
44343273 |
T |
|
| Q |
179 |
ttctctccaaatctgccaccttcacaaaaggtgaataatttccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgac |
278 |
Q |
| |
|
|| ||||||| |||| | |||| ||||| || ||||||| ||||| | |||||| | | ||| | | ||||||||| ||| || ||||| || | | |
|
|
| T |
44343272 |
ttatctccaactctgtcgccttgacaaatggagaataatcaccatccaatcctaactctaccctgagtttctttattgctgcttctgagcaaagtttaat |
44343173 |
T |
|
| Q |
279 |
gttaatctgcttccccgccattgg |
302 |
Q |
| |
|
||| ||||||| |||||||||||| |
|
|
| T |
44343172 |
gttgatctgctcccccgccattgg |
44343149 |
T |
|
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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 101 - 302
Target Start/End: Complemental strand, 21158093 - 21157892
Alignment:
| Q |
101 |
tggggcacaaaattttgtgaatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccacctt |
200 |
Q |
| |
|
|||||||||| || |||||||| |||| ||| ||| ||||||| ||||| || ||||||||||| | | |||||| | || |||| || |||| |||||| |
|
|
| T |
21158093 |
tggggcacaacatgttgtgaattataagacaaattgcaccctttacccatgcctttggtttctccattttcttcagtcttatctctaactctgtcacctt |
21157994 |
T |
|
| Q |
201 |
cacaaaaggtgaataatttccatctagtcctaattttgtcctcaatctctttattgatgcatcagagcagagatcgacgttaatctgcttccccgccatt |
300 |
Q |
| |
|
||||| || ||||||| ||||| | |||||| | | ||| | ||||||||||| ||| || ||||| || | | ||| ||||||| |||||||||| |
|
|
| T |
21157993 |
gacaaatggagaataatcaccatccaatcctaactctaccctaagtctctttattgctgcttctgagcaaagtttaatgttgatctgctcccccgccatt |
21157894 |
T |
|
| Q |
301 |
gg |
302 |
Q |
| |
|
|| |
|
|
| T |
21157893 |
gg |
21157892 |
T |
|
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Target: scaffold0144 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 101 - 217
Target Start/End: Complemental strand, 15082 - 14966
Alignment:
| Q |
101 |
tggggcacaaaattttgtgaatgataaaacagattacacccttcacccacgcttttggtttctctagtatcttcaatattctctccaaatctgccacctt |
200 |
Q |
| |
|
|||||||||| || |||||||| |||| ||| ||| ||||||| ||||| || ||||||||||| | | | |||||| || ||||||| |||||| |||| |
|
|
| T |
15082 |
tggggcacaacatgttgtgaattataagacaaattgcaccctttacccatgcctttggtttctccattttattcaatcttatctccaactctgccgcctt |
14983 |
T |
|
| Q |
201 |
cacaaaaggtgaataat |
217 |
Q |
| |
|
||||| || ||||||| |
|
|
| T |
14982 |
gacaaatggagaataat |
14966 |
T |
|
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