View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_52 (Length: 323)
Name: NF14353_low_52
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 28699161 - 28699442
Alignment:
| Q |
13 |
aattctaaccattagattgtgaagctatatgatttttagcatacactgtcgatacccaatacnnnnnnnnnnataaattttattgtcactttttccattc |
112 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| | |||||||||||||||||| |||||| |
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| T |
28699161 |
aattctaactattagattgtgaagctatatgatttttagcatacactgtcggtatccaatatttttt------ttaattttattgtcacttttcccattc |
28699254 |
T |
|
| Q |
113 |
tctttcctctccatccccatccttctttccacgacagatctccagaaacactcacatttgtcatctccttctcgttgtagtcatttatagatgttttttc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
28699255 |
tctttcctctccatccccatccttctttccacgacagatctccagaaacactcacatttgccatctccttcccgttgtagtcatttatagatgttttttc |
28699354 |
T |
|
| Q |
213 |
ctctttaaatttcctttaaatcattaaattgaaaatcatgattgcaaaagattcaaatagtatgctatcttcgatttcaatttacaac |
300 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28699355 |
ctctttaaatttcctttaaatcattgaattgaaaatcatgattgcaaaagattcaaatagtatgctatcttcaatttcaatttacaac |
28699442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 13 - 300
Target Start/End: Original strand, 42859801 - 42860082
Alignment:
| Q |
13 |
aattctaaccattagattgtgaagctatatgatttttagcatacactgtcgatacccaatacnnnnnnnnnnataaattttattgtcactttttccattc |
112 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||| | |||||||||||||||||| ||||| |
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| T |
42859801 |
aattctaagcattagattgtgaagctatatgatttttagcatacactctcggtacccaatactttttt-----ttaattttattgtcacttttctcattc |
42859895 |
T |
|
| Q |
113 |
tctttcctctccatccccatccttctttccacgacagatctccagaaacactcacatttgtcatctccttctcgttgtagtcatttatagatgttttttc |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||| ||||||||| |||||||||| |
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| T |
42859896 |
tctttcctctccatccccatccttctttccacgacagatctccataaacactcatatttgtcatctcctttccgttgta-tcatttataaatgttttttc |
42859994 |
T |
|
| Q |
213 |
ctctttaaatttcctttaaatcattaaattgaaaatcatgattgcaaaagattcaaatagtatgctatcttcgatttcaatttacaac |
300 |
Q |
| |
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|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||| |
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| T |
42859995 |
ctctttaaattttctttaaatcattgaattgaaaatcatgattgcaaaagattcaaagagtatgctaccttcaatttcaatttacaac |
42860082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 13 - 300
Target Start/End: Complemental strand, 10670843 - 10670560
Alignment:
| Q |
13 |
aattctaaccattagattgtgaagctatatgatttttagcatacactgtcgatacccaatacnnnnnnnnnnataaattttattgtcactttttccattc |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||| |||| ||| |||||| | |||||||||||||||||| ||||| |
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| T |
10670843 |
aattctaatcattagattgtgaagctatatgatttttagcatgcaccgtcggtactcaatacttttt------ttaattttattgtcacttttctcattc |
10670750 |
T |
|
| Q |
113 |
tctttcctctccatccccatccttctttccacgacagatctccagaaacactcacatttgtcatctccttctcgttgtagtcatttata--gatgttttt |
210 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||| || ||||||| ||||| ||| |
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| T |
10670749 |
tctttcctcttcatccccatccttctttccatgacagatctccagaaacactcacatttgccatctccttcccgttgtggtaatttatatagatgtgttt |
10670650 |
T |
|
| Q |
211 |
tcctctttaaatttcctttaaatcattaaattgaaaatcatgattgcaaaagattcaaatagtatgctatcttcgatttcaatttacaac |
300 |
Q |
| |
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|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
10670649 |
tcctttttaaatttcctttaaatcattgaattgaaaatcatgattgcaaaagattcaaagagtatgctatcttcaatttcaatttacaac |
10670560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 43
Target Start/End: Complemental strand, 9406835 - 9406805
Alignment:
| Q |
13 |
aattctaaccattagattgtgaagctatatg |
43 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
9406835 |
aattctaaccattagattgtgaagctatatg |
9406805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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