View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_55 (Length: 309)
Name: NF14353_low_55
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_55 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 12582975 - 12582679
Alignment:
| Q |
1 |
aatctcactcggattaacaatattatcatagttaaaagttagctcnnnnnnnctatgtcttgacccatttccattaggactttgttatttggtgttatac |
100 |
Q |
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| T |
12582975 |
aatctcactcggattaacaatattatcatagttaaaagttagctctttttttctatgtcttgacccatttccattaggactttgttatttggtgttatac |
12582876 |
T |
|
| Q |
101 |
atggatcattcatggaatcatcatccaaattagatttgcatcaacataaatatttacatattttactattgggtgctgtagctgaatagcttttatgaaa |
200 |
Q |
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| T |
12582875 |
atggatcattcatggaatcatcatccaaatcagatttgcatcaacataaatatttacatattttactattgggtgctgtagctgaatagcttttatgaaa |
12582776 |
T |
|
| Q |
201 |
ttccttaatgaagttgtacccttactggtccattaaaagttttcaataagaatccaaattaaatacttcttacaaccaacagacaatgacacatatt |
297 |
Q |
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| T |
12582775 |
ttccttaatgaagttgtacccttactggtccattaaaaattttcaataagaatccaaattaaatacttcttacaaccaacagacaatgacacatatt |
12582679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 82 - 272
Target Start/End: Complemental strand, 12522579 - 12522390
Alignment:
| Q |
82 |
ttgttatttggtgttatacatggatcattcatggaatcatcatccaaattagatttgcatcaacataaatatttacatattttactattgggtgctgtag |
181 |
Q |
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| T |
12522579 |
ttgttatgtggtgttataggtggatcattcatggaatcatcatccaaatcggatttccatcaacatat-tatttacagattttactcttgggtgttgtag |
12522481 |
T |
|
| Q |
182 |
ctgaatagcttttatgaaattccttaatgaagttgtacccttactggtccattaaaagttttcaataagaatccaaattaaatacttctta |
272 |
Q |
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| T |
12522480 |
ctgaatagcttttatgaaattccttgatgaagttgcacccttactggtccattaaaagttttcaataagaatccaaattaaatacttctta |
12522390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 85 - 297
Target Start/End: Complemental strand, 12498794 - 12498581
Alignment:
| Q |
85 |
ttatttggtgttatacatggatcattcatggaatcatcatccaaattagatttgcatcaacataaatatttacatattttactattgggtgctgtagctg |
184 |
Q |
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|||| |||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||| ||||||| |
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| T |
12498794 |
ttatgtggtgttataggtagatcattcatggaatcatcatccaaatcggatttgcatcaacataattatttacagcttttactcttgggtgttgtagcta |
12498695 |
T |
|
| Q |
185 |
aatagcttttatgaaattccttaatgaagttgtacccttactggtccattaaaagttttcaataagaatccaaattaaatacttcttacaaccaaca-ga |
283 |
Q |
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| T |
12498694 |
aatagcttttatgaaattccttgatgaagttgcacccttactggtccattaaatgttttcaataagaatccaaattaaatactttttaaaacgaacacga |
12498595 |
T |
|
| Q |
284 |
caatgacacatatt |
297 |
Q |
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| T |
12498594 |
cactgacacatatt |
12498581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 215 - 258
Target Start/End: Original strand, 439735 - 439778
Alignment:
| Q |
215 |
tgtacccttactggtccattaaaagttttcaataagaatccaaa |
258 |
Q |
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| T |
439735 |
tgtacccttactgatccattaaaagttttaaataaggatccaaa |
439778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 154
Target Start/End: Complemental strand, 848219 - 848153
Alignment:
| Q |
88 |
tttggtgttatacatggatcattcatggaatcatcatccaaattagatttgcatcaacataaatatt |
154 |
Q |
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||||||| |||| |||||||| |||| |||||||| |||||| |||| |||| ||||||||||||| |
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| T |
848219 |
tttggtgatataggtggatcatccatgaaatcatcaaccaaatcagatctgcaacaacataaatatt |
848153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 847760 - 847712
Alignment:
| Q |
215 |
tgtacccttactggtccattaaaagttttcaataagaatccaaattaaa |
263 |
Q |
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||||||||||| | ||||| |||||||||||||||| ||| |||||||| |
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| T |
847760 |
tgtacccttaccgatccatcaaaagttttcaataaggatctaaattaaa |
847712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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