View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_56 (Length: 303)
Name: NF14353_low_56
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 285
Target Start/End: Complemental strand, 8210748 - 8210468
Alignment:
| Q |
8 |
agatgaagaagagagagtagtagtgataaatgtgatacacaaagatggaatggagattgtgaatggtgttagatgagtgctggnnnnnnn-ctt--tcta |
104 |
Q |
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| T |
8210748 |
agatgaagaagagagagtagtagtgataaatgtgatacacagagatggaatggagattctgaatggtgttagatgagtgctggttttttttcttcttcta |
8210649 |
T |
|
| Q |
105 |
agggcttcaaaaattacaacataactcattatcttcttcatttaaactcttctccatttgtataagaacgaaattagggatggtaaaataggtcgagtct |
204 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
8210648 |
agggcttcaaaaattacaacataactcactatcttcttcatttaaactcttctccatttgtataagaacgaaattagagatggtaaaataggtcgagtct |
8210549 |
T |
|
| Q |
205 |
atcgaaccaatccgtttaatatgttattttaaataaattgagttgatgttttaaactcaatctcttaagttggttcactct |
285 |
Q |
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|||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8210548 |
atcgaaccaatcagtttaatctgttattttaaataaaccgagttgatgttttaaactcaatctcttaagttggttcactct |
8210468 |
T |
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