View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14353_low_60 (Length: 291)
Name: NF14353_low_60
Description: NF14353
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14353_low_60 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 275
Target Start/End: Original strand, 32805747 - 32806002
Alignment:
| Q |
14 |
attattctgctactccctctggctgatttggagtcacaggaaccaactggtttttaaccaatctgtgtttgagcctattgttatttcgaagaaggcagcc |
113 |
Q |
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| T |
32805747 |
attattctgctactccctctggctgatttggagtcacaggaaccaactggtttttaaccaatctgtgtttgagcctattgttatttcgaagaaggcagcc |
32805846 |
T |
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| Q |
114 |
tctttagttgaggagttcaactctgttaatcctccccgaaactcccctccggttagtgctctcactaagtggattccacctcctagtggttatgttaatg |
213 |
Q |
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| T |
32805847 |
tctttagttgaggagttcaactctgtgaatcctccccgaaactctcctctggttagtgctctcaataagtggattccacctcctagtggtt------atg |
32805940 |
T |
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| Q |
214 |
ttaagatcaatgtcgatttcgggtgttttagtgatggtacgacaggttgggggatggttgtg |
275 |
Q |
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| T |
32805941 |
ttaagatcaatgtcgatgccgggtgttttagtgatggtacgacaggttgggggatggttgtg |
32806002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 14 - 275
Target Start/End: Complemental strand, 6095170 - 6094915
Alignment:
| Q |
14 |
attattctgctactccctctggctgatttggagtcacaggaaccaactggtttttaaccaatctgtgtttgagcctattgttatttcgaagaaggcagcc |
113 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6095170 |
attattctgctactccctctggctgatttggagtcataggaaccaactagtttttaaccaatctgtgtttgagcctattgttatttcaaagaaggcagcc |
6095071 |
T |
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| Q |
114 |
tctttagttgaggagttcaactctgttaatcctccccgaaactcccctccggttagtgctctcactaagtggattccacctcctagtggttatgttaatg |
213 |
Q |
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| T |
6095070 |
tctttagttgaggagttcaactctgttaatcctccctgaaactcccctccggttagtgctctcactaagtggattccacttcctagtggttatg------ |
6094977 |
T |
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| Q |
214 |
ttaagatcaatgtcgatttcgggtgttttagtgatggtacgacaggttgggggatggttgtg |
275 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6094976 |
ttaagatcaacgtcgatgccgggtgttttagtgatggtacgacaggttgggggatggttgtg |
6094915 |
T |
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